Wall clock time and date at job start Mon Mar 30 2020 20:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99888 * 2 1 4 4 H 1.48493 * 109.47285 * 269.99919 * 3 2 1 5 5 H 1.48502 * 109.46724 * 29.99823 * 3 2 1 6 6 H 1.48493 * 109.47190 * 149.99579 * 3 2 1 7 7 C 1.37874 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00129 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.46954 * 111.00290 * 169.99895 * 10 9 7 12 12 C 1.53048 * 109.36614 * 183.18741 * 11 10 9 13 13 N 1.46959 * 109.36196 * 301.59870 * 12 11 10 14 14 C 1.46900 * 110.99602 * 183.18887 * 13 12 11 15 15 C 1.53004 * 109.46868 * 170.00203 * 14 13 12 16 16 C 1.50701 * 109.47223 * 180.02562 * 15 14 13 17 17 C 1.38658 * 120.78488 * 270.29652 * 16 15 14 18 18 C 1.38203 * 119.15897 * 180.21971 * 17 16 15 19 19 N 1.31872 * 120.76276 * 359.47460 * 18 17 16 20 20 C 1.31868 * 121.73078 * 0.27879 * 19 18 17 21 21 C 1.38209 * 120.76227 * 359.97289 * 20 19 18 22 22 C 1.46954 * 110.88077 * 59.31991 * 13 12 11 23 23 C 1.46959 * 110.99602 * 293.79819 * 10 9 7 24 24 H 0.96998 * 120.00507 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47039 * 59.99931 * 9 7 2 26 26 H 1.09008 * 109.46807 * 300.00129 * 9 7 2 27 27 H 1.09008 * 109.48690 * 63.21733 * 11 10 9 28 28 H 1.09003 * 109.50701 * 303.16850 * 11 10 9 29 29 H 1.09002 * 109.48546 * 181.63353 * 12 11 10 30 30 H 1.08992 * 109.48892 * 61.56906 * 12 11 10 31 31 H 1.08997 * 109.47401 * 50.00562 * 14 13 12 32 32 H 1.09000 * 109.47366 * 289.99943 * 14 13 12 33 33 H 1.08995 * 109.47547 * 60.00085 * 15 14 13 34 34 H 1.09001 * 109.47055 * 299.99485 * 15 14 13 35 35 H 1.07994 * 120.41972 * 359.97438 * 17 16 15 36 36 H 1.08002 * 119.61988 * 179.75634 * 18 17 16 37 37 H 1.07999 * 119.61884 * 180.02562 * 20 19 18 38 38 H 1.07997 * 120.41921 * 180.02562 * 21 20 19 39 39 H 1.09008 * 109.48690 * 60.64770 * 22 13 12 40 40 H 1.08999 * 109.49023 * 180.70560 * 22 13 12 41 41 H 1.08992 * 109.49277 * 296.77913 * 23 10 9 42 42 H 1.09002 * 109.49025 * 56.84890 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6526 0.7000 6 1 3.5465 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6157 0.0018 11 6 1.5209 -4.8939 0.2401 12 6 2.5564 -6.0186 0.3130 13 7 3.3203 -6.0596 -0.9418 14 6 4.2750 -7.1761 -0.9405 15 6 4.8690 -7.3407 -2.3409 16 6 5.8478 -8.4865 -2.3399 17 6 7.1870 -8.2756 -2.0487 18 6 8.0563 -9.3499 -2.0619 19 7 7.6231 -10.5648 -2.3366 20 6 6.3560 -10.8032 -2.6131 21 6 5.4296 -9.7776 -2.6239 22 6 4.0051 -4.7814 -1.1801 23 6 2.9696 -3.6567 -1.2530 24 1 -0.4851 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8904 27 1 0.8259 -5.0918 -0.5761 28 1 0.9723 -4.8431 1.1806 29 1 2.0483 -6.9716 0.4608 30 1 3.2348 -5.8348 1.1460 31 1 3.7608 -8.0935 -0.6539 32 1 5.0743 -6.9700 -0.2288 33 1 5.3832 -6.4234 -2.6277 34 1 4.0696 -7.5470 -3.0527 35 1 7.5469 -7.2838 -1.8186 36 1 9.1017 -9.1935 -1.8401 37 1 6.0383 -11.8118 -2.8329 38 1 4.3932 -9.9792 -2.8507 39 1 4.7002 -4.5835 -0.3639 40 1 4.5535 -4.8324 -2.1207 41 1 2.2912 -3.8405 -2.0860 42 1 3.4777 -2.7037 -1.4007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589257607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:03 Heat of formation + Delta-G solvation = 40.775509 kcal Electronic energy + Delta-G solvation = -20632.940267 eV Core-core repulsion = 17612.527408 eV Total energy + Delta-G solvation = -3020.412859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.42362 -38.83288 -35.85333 -33.92737 -32.42524 -31.44436 -30.53113 -29.71334 -27.43311 -25.16128 -23.71202 -23.29461 -23.02172 -21.52139 -21.00414 -19.20517 -16.94869 -16.63738 -16.31941 -15.98323 -15.66808 -14.93618 -14.60910 -14.44024 -14.26523 -13.99159 -13.96235 -13.70066 -13.43611 -13.03635 -12.43106 -12.30816 -12.01261 -11.94903 -11.70661 -11.26101 -11.06623 -10.85551 -10.72908 -10.63644 -10.40029 -10.29808 -9.83968 -9.73330 -9.61003 -9.40932 -9.18515 -8.45382 -8.19500 -7.24247 -6.03733 -4.05310 0.88262 0.99565 3.30493 3.36826 3.40911 3.54636 3.94609 4.21352 4.41174 4.49110 4.58226 4.84687 4.87640 4.92485 4.95457 5.09306 5.29748 5.31880 5.32536 5.47473 5.49674 5.54787 5.62651 5.73430 5.78641 5.79938 5.87390 5.91148 6.05566 6.14973 6.20893 6.41506 6.46309 6.57604 6.66567 7.15469 7.18815 7.33567 7.36109 7.71919 7.78767 8.08014 8.19720 8.54055 9.02179 9.58987 11.07166 Molecular weight = 275.17amu Principal moments of inertia in cm(-1) A = 0.036965 B = 0.002972 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.285772 B = 9418.370959 C = 9930.733033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.540 5.540 14 C 0.064 3.936 15 C -0.082 4.082 16 C -0.031 4.031 17 C -0.171 4.171 18 C 0.098 3.902 19 N -0.493 5.493 20 C 0.097 3.903 21 C -0.170 4.170 22 C 0.055 3.945 23 C 0.067 3.933 24 H 0.261 0.739 25 H -0.008 1.008 26 H 0.030 0.970 27 H 0.031 0.969 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.134 0.866 36 H 0.154 0.846 37 H 0.154 0.846 38 H 0.135 0.865 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.889 -18.295 -4.451 21.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.265 5.265 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.265 5.265 14 C -0.064 4.064 15 C -0.120 4.120 16 C -0.040 4.040 17 C -0.190 4.190 18 C -0.059 4.059 19 N -0.203 5.203 20 C -0.060 4.060 21 C -0.190 4.190 22 C -0.073 4.073 23 C -0.061 4.061 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.152 0.848 36 H 0.171 0.829 37 H 0.171 0.829 38 H 0.153 0.847 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.311 -18.850 -4.430 22.425 hybrid contribution -0.270 1.658 0.019 1.680 sum 11.041 -17.193 -4.411 20.904 Atomic orbital electron populations 1.69955 1.06070 1.26784 1.50994 1.24992 0.94862 0.99315 0.95458 0.86506 0.79805 0.83132 0.78031 1.20726 1.21250 1.19797 1.21150 0.93428 0.89964 1.50065 0.91951 1.19702 0.90042 0.87287 0.96111 1.62283 1.28142 1.02774 1.33265 1.22062 0.94729 0.89965 1.00502 1.22148 0.96069 0.98594 0.89790 1.62164 1.25673 1.03371 1.35258 1.21979 0.94385 0.94980 0.95073 1.20693 0.97127 0.95594 0.98583 1.20382 0.94490 0.95162 0.93977 1.22121 0.93884 1.01026 1.02013 1.22757 1.00157 0.87820 0.95150 1.67669 1.17209 1.23689 1.11688 1.22761 0.88537 0.99468 0.95195 1.22111 1.01466 0.93175 1.02209 1.22312 0.96218 0.88672 1.00106 1.21986 0.95446 0.97395 0.91312 0.92912 0.99061 0.95240 0.95120 0.91000 0.91219 0.94306 0.90954 0.94845 0.90188 0.89545 0.84790 0.82855 0.82866 0.84682 0.94338 0.91047 0.95311 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -14.19 8.47 -34.44 -0.29 -14.48 16 8 H 0.06 1.72 7.13 -52.48 -0.37 1.35 16 9 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 10 N -0.54 -11.68 4.70 -235.90 -1.11 -12.79 16 11 C 0.06 1.03 5.61 -3.77 -0.02 1.01 16 12 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 13 N -0.54 -7.62 4.71 -234.47 -1.10 -8.72 16 14 C 0.06 0.71 4.94 -3.82 -0.02 0.70 16 15 C -0.08 -0.79 5.32 -27.88 -0.15 -0.94 16 16 C -0.03 -0.29 5.17 -104.31 -0.54 -0.83 16 17 C -0.17 -1.53 9.82 -39.44 -0.39 -1.91 16 18 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 19 N -0.49 -5.24 10.36 -13.25 -0.14 -5.38 16 20 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 21 C -0.17 -1.46 9.82 -39.44 -0.39 -1.85 16 22 C 0.05 0.84 5.41 -3.77 -0.02 0.82 16 23 C 0.07 1.30 5.43 -3.77 -0.02 1.28 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 26 H 0.03 0.82 8.03 -51.92 -0.42 0.41 16 27 H 0.03 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 29 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 30 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.76 8.03 -51.93 -0.42 0.34 16 32 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 33 H 0.08 0.77 6.46 -51.93 -0.34 0.44 16 34 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.07 0.94 6.34 -51.93 -0.33 0.61 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.09 1.78 6.79 -51.93 -0.35 1.42 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -31.12 338.42 -10.75 -41.87 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -6.84 Total: -3.18 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -2.37 Total: -7.44 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -1.61 Total: -52.84 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.12 -10.75 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589257607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.644 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds