Wall clock time and date at job start Mon Mar 30 2020 20:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.78915 * 2 1 4 4 C 1.38187 * 119.15888 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76738 * 359.73984 * 4 3 2 6 6 C 1.31859 * 121.72457 * 0.52816 * 5 4 3 7 7 C 1.50696 * 119.61872 * 179.74956 * 6 5 4 8 8 N 1.46900 * 109.47082 * 274.72960 * 7 6 5 9 9 C 1.46965 * 110.99928 * 169.99802 * 8 7 6 10 10 C 1.53051 * 109.36478 * 176.80885 * 9 8 7 11 11 N 1.46953 * 109.36263 * 58.40072 * 10 9 8 12 12 C 1.46900 * 111.00084 * 176.81102 * 11 10 9 13 13 C 1.50698 * 109.47171 * 64.48759 * 12 11 10 14 14 H 1.08004 * 119.99614 * 4.82620 * 13 12 11 15 15 C 1.37880 * 120.00350 * 184.81626 * 13 12 11 16 16 N 1.31519 * 119.99446 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00268 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47159 * 60.00200 * 17 15 13 19 19 H 1.48493 * 109.47492 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47318 * 300.00753 * 17 15 13 21 21 C 1.46957 * 110.88284 * 300.68153 * 11 10 9 22 22 C 1.46953 * 111.00102 * 46.20102 * 8 7 6 23 23 C 1.38232 * 120.76233 * 359.47838 * 6 5 4 24 24 H 1.08998 * 109.47139 * 269.97718 * 1 2 3 25 25 H 1.09008 * 109.47174 * 29.97323 * 1 2 3 26 26 H 1.09003 * 109.47242 * 149.97736 * 1 2 3 27 27 H 1.07999 * 120.41850 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.61309 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47246 * 154.72406 * 7 6 5 30 30 H 1.09000 * 109.46810 * 34.72868 * 7 6 5 31 31 H 1.09000 * 109.48364 * 56.84383 * 9 8 7 32 32 H 1.09000 * 109.48758 * 296.77807 * 9 8 7 33 33 H 1.08998 * 109.48855 * 178.36930 * 10 9 8 34 34 H 1.08998 * 109.48710 * 298.43772 * 10 9 8 35 35 H 1.08993 * 109.47259 * 184.49509 * 12 11 10 36 36 H 1.09011 * 109.46884 * 304.49398 * 12 11 10 37 37 H 0.97001 * 119.99405 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.48521 * 299.35194 * 21 11 10 39 39 H 1.09000 * 109.48942 * 179.28974 * 21 11 10 40 40 H 1.08998 * 109.48781 * 303.15376 * 22 8 7 41 41 H 1.08998 * 109.49073 * 63.22395 * 22 8 7 42 42 H 1.07999 * 120.41428 * 180.23298 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1520 -0.0005 5 7 4.2403 0.0000 0.0041 6 6 3.5983 -1.1517 -0.0010 7 6 4.3800 -2.4401 -0.0010 8 7 4.7367 -2.7963 -1.3808 9 6 5.6949 -3.9103 -1.4062 10 6 5.9791 -4.3024 -2.8580 11 7 6.5094 -3.1387 -3.5821 12 6 6.8662 -3.4949 -4.9618 13 6 5.6230 -3.8915 -5.7157 14 1 4.6551 -3.8058 -5.2441 15 6 5.7211 -4.3636 -7.0074 16 7 6.8998 -4.4682 -7.5815 17 14 4.1802 -4.8545 -7.9421 18 1 3.2760 -3.6821 -8.0564 19 1 4.5537 -5.3262 -9.2996 20 1 3.4855 -5.9459 -7.2130 21 6 5.5513 -2.0247 -3.5567 22 6 5.2671 -1.6327 -2.1048 23 6 2.2165 -1.1909 -0.0006 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6967 2.1378 -0.0004 28 1 4.1583 2.0753 -0.0001 29 1 3.7723 -3.2338 0.4337 30 1 5.2883 -2.3139 0.5881 31 1 5.2742 -4.7639 -0.8747 32 1 6.6229 -3.6028 -0.9242 33 1 6.7116 -5.1092 -2.8801 34 1 5.0559 -4.6357 -3.3320 35 1 7.3294 -2.6377 -5.4502 36 1 7.5669 -4.3299 -4.9519 37 1 6.9689 -4.8007 -8.4901 38 1 4.6233 -2.3323 -4.0386 39 1 5.9719 -1.1711 -4.0882 40 1 4.5347 -0.8258 -2.0827 41 1 6.1903 -1.2993 -1.6308 42 1 1.6964 -2.1374 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616768708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:37 Heat of formation + Delta-G solvation = 46.125211 kcal Electronic energy + Delta-G solvation = -21351.792946 eV Core-core repulsion = 18331.612068 eV Total energy + Delta-G solvation = -3020.180878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51921 -38.46662 -35.37421 -33.95845 -32.56245 -31.52289 -30.19893 -28.33001 -27.93202 -25.92126 -24.07558 -23.27560 -22.69796 -21.53363 -20.65084 -18.98782 -16.68459 -16.36485 -16.28345 -15.81839 -15.54970 -14.67528 -14.39714 -14.23074 -14.09571 -14.05922 -13.50575 -13.17490 -12.99562 -12.77354 -12.71644 -12.60989 -11.91833 -11.72390 -11.69674 -11.53504 -11.00963 -10.81991 -10.58410 -10.46157 -10.27152 -10.00722 -9.81023 -9.56762 -9.52255 -9.38764 -9.09811 -8.38460 -7.99094 -7.09718 -5.97919 -4.06704 1.02827 1.17361 3.31907 3.36353 3.39452 3.61278 4.18288 4.43662 4.44904 4.47499 4.58085 4.95802 5.03898 5.13697 5.16316 5.27560 5.32190 5.36930 5.41908 5.57022 5.57762 5.70967 5.74666 5.78171 5.94862 6.00443 6.05383 6.14934 6.19542 6.25252 6.40452 6.63212 6.70095 6.84956 6.93303 7.27413 7.33612 7.45780 7.57623 7.95164 7.96172 8.12664 8.33835 8.37439 9.04073 9.59831 11.07066 Molecular weight = 275.17amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.004296 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.557658 B = 6515.546806 C = 7116.072841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.045 4.045 3 C -0.181 4.181 4 C 0.103 3.897 5 N -0.481 5.481 6 C 0.141 3.859 7 C 0.102 3.898 8 N -0.530 5.530 9 C 0.060 3.940 10 C 0.066 3.934 11 N -0.544 5.544 12 C 0.187 3.813 13 C -0.547 4.547 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.893 5.893 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C 0.064 3.936 22 C 0.065 3.935 23 C -0.155 4.155 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.131 0.869 28 H 0.154 0.846 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.033 0.967 37 H 0.262 0.738 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 8.185 17.405 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.053 4.053 3 C -0.201 4.201 4 C -0.055 4.055 5 N -0.192 5.192 6 C 0.004 3.996 7 C -0.026 4.026 8 N -0.256 5.256 9 C -0.068 4.068 10 C -0.063 4.063 11 N -0.268 5.268 12 C 0.062 3.938 13 C -0.586 4.586 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.065 4.065 22 C -0.063 4.063 23 C -0.176 4.176 24 H 0.093 0.907 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.149 0.851 28 H 0.171 0.829 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.057 0.943 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.184 8.110 17.235 21.146 hybrid contribution -1.792 -0.204 -0.745 1.951 sum -10.976 7.906 16.490 21.328 Atomic orbital electron populations 1.20821 0.90351 1.03441 1.02642 1.20331 0.96722 0.93028 0.95200 1.22003 0.95723 0.98528 1.03842 1.22709 0.91713 0.96056 0.94997 1.67581 1.41315 0.98091 1.12166 1.21108 0.91166 0.93490 0.93843 1.21019 0.98245 0.91797 0.91538 1.62357 1.43341 1.08279 1.11627 1.22253 0.93132 0.92938 0.98505 1.21901 0.99362 0.93779 0.91287 1.62680 1.39459 1.06240 1.18411 1.19725 0.95675 0.96521 0.81928 1.21752 0.94150 1.43734 0.99009 0.92374 1.24960 0.95794 0.95447 0.97581 1.69943 1.22813 1.46314 1.14080 0.86706 0.83646 0.78964 0.79001 1.20314 1.21251 1.20266 1.21948 0.95999 0.94931 0.93576 1.22225 0.97836 0.91494 0.94725 1.21844 0.94716 0.98775 1.02227 0.90699 0.91097 0.90890 0.85095 0.82870 0.89532 0.93131 0.91208 0.94527 0.91308 0.93428 0.95480 0.94856 0.92825 0.93609 0.91605 0.91557 0.94263 0.84760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.06 36.01 0.36 -0.48 16 2 C -0.04 -0.46 5.92 -104.32 -0.62 -1.07 16 3 C -0.18 -1.78 9.82 -39.44 -0.39 -2.17 16 4 C 0.10 1.16 11.18 -17.55 -0.20 0.96 16 5 N -0.48 -6.70 8.74 -9.47 -0.08 -6.78 16 6 C 0.14 1.90 4.92 -82.58 -0.41 1.49 16 7 C 0.10 1.38 5.60 -4.98 -0.03 1.35 16 8 N -0.53 -8.74 4.85 -235.91 -1.14 -9.89 16 9 C 0.06 0.98 5.58 -3.76 -0.02 0.96 16 10 C 0.07 1.33 5.32 -3.77 -0.02 1.31 16 11 N -0.54 -12.28 4.92 -235.91 -1.16 -13.44 16 12 C 0.19 4.97 5.14 -4.98 -0.03 4.95 16 13 C -0.55 -15.39 7.67 -34.44 -0.26 -15.66 16 14 H 0.06 1.64 5.81 -52.48 -0.31 1.34 16 15 C 0.06 1.85 5.46 -17.82 -0.10 1.75 16 16 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 17 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.06 1.36 5.24 -3.77 -0.02 1.34 16 22 C 0.07 1.18 4.79 -3.77 -0.02 1.16 16 23 C -0.16 -1.81 9.43 -39.44 -0.37 -2.19 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.07 0.45 8.10 -51.92 -0.42 0.02 16 26 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 27 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 29 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 30 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.05 1.07 6.95 -51.93 -0.36 0.70 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.03 0.94 8.12 -51.92 -0.42 0.52 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 38 H 0.05 1.07 6.45 -51.93 -0.34 0.73 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.07 1.19 5.97 -51.93 -0.31 0.88 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 333.87 15.07 5.03 5.03 Total: -1.00 -31.27 333.87 -10.52 -41.80 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.77 Total: -1.31 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.11 Total: -6.29 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -1.65 Total: -56.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.27 -10.52 -41.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616768708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.922 kcal (2) G-P(sol) polarization free energy of solvation -31.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds