Wall clock time and date at job start Mon Mar 30 2020 20:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38674 * 120.78915 * 2 1 4 4 C 1.38187 * 119.15888 * 180.02562 * 3 2 1 5 5 N 1.31884 * 120.76738 * 359.73984 * 4 3 2 6 6 C 1.31859 * 121.72457 * 0.52816 * 5 4 3 7 7 C 1.50696 * 119.61872 * 179.74956 * 6 5 4 8 8 N 1.46900 * 109.47082 * 274.72960 * 7 6 5 9 9 C 1.46965 * 110.99928 * 169.99802 * 8 7 6 10 10 C 1.53051 * 109.36478 * 176.80885 * 9 8 7 11 11 N 1.46953 * 109.36263 * 58.40072 * 10 9 8 12 12 C 1.46900 * 111.00084 * 176.81102 * 11 10 9 13 13 C 1.50698 * 109.47171 * 64.48759 * 12 11 10 14 14 H 1.08004 * 119.99614 * 4.82620 * 13 12 11 15 15 C 1.37880 * 120.00350 * 184.81626 * 13 12 11 16 16 N 1.31519 * 119.99446 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00268 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47159 * 60.00200 * 17 15 13 19 19 H 1.48493 * 109.47492 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47318 * 300.00753 * 17 15 13 21 21 C 1.46957 * 110.88284 * 300.68153 * 11 10 9 22 22 C 1.46953 * 111.00102 * 46.20102 * 8 7 6 23 23 C 1.38232 * 120.76233 * 359.47838 * 6 5 4 24 24 H 1.08998 * 109.47139 * 269.97718 * 1 2 3 25 25 H 1.09008 * 109.47174 * 29.97323 * 1 2 3 26 26 H 1.09003 * 109.47242 * 149.97736 * 1 2 3 27 27 H 1.07999 * 120.41850 * 359.97438 * 3 2 1 28 28 H 1.08000 * 119.61309 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47246 * 154.72406 * 7 6 5 30 30 H 1.09000 * 109.46810 * 34.72868 * 7 6 5 31 31 H 1.09000 * 109.48364 * 56.84383 * 9 8 7 32 32 H 1.09000 * 109.48758 * 296.77807 * 9 8 7 33 33 H 1.08998 * 109.48855 * 178.36930 * 10 9 8 34 34 H 1.08998 * 109.48710 * 298.43772 * 10 9 8 35 35 H 1.08993 * 109.47259 * 184.49509 * 12 11 10 36 36 H 1.09011 * 109.46884 * 304.49398 * 12 11 10 37 37 H 0.97001 * 119.99405 * 179.97438 * 16 15 13 38 38 H 1.09000 * 109.48521 * 299.35194 * 21 11 10 39 39 H 1.09000 * 109.48942 * 179.28974 * 21 11 10 40 40 H 1.08998 * 109.48781 * 303.15376 * 22 8 7 41 41 H 1.08998 * 109.49073 * 63.22395 * 22 8 7 42 42 H 1.07999 * 120.41428 * 180.23298 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1520 -0.0005 5 7 4.2403 0.0000 0.0041 6 6 3.5983 -1.1517 -0.0010 7 6 4.3800 -2.4401 -0.0010 8 7 4.7367 -2.7963 -1.3808 9 6 5.6949 -3.9103 -1.4062 10 6 5.9791 -4.3024 -2.8580 11 7 6.5094 -3.1387 -3.5821 12 6 6.8662 -3.4949 -4.9618 13 6 5.6230 -3.8915 -5.7157 14 1 4.6551 -3.8058 -5.2441 15 6 5.7211 -4.3636 -7.0074 16 7 6.8998 -4.4682 -7.5815 17 14 4.1802 -4.8545 -7.9421 18 1 3.2760 -3.6821 -8.0564 19 1 4.5537 -5.3262 -9.2996 20 1 3.4855 -5.9459 -7.2130 21 6 5.5513 -2.0247 -3.5567 22 6 5.2671 -1.6327 -2.1048 23 6 2.2165 -1.1909 -0.0006 24 1 -0.3633 -0.0004 1.0276 25 1 -0.3634 0.8903 -0.5134 26 1 -0.3634 -0.8898 -0.5142 27 1 1.6967 2.1378 -0.0004 28 1 4.1583 2.0753 -0.0001 29 1 3.7723 -3.2338 0.4337 30 1 5.2883 -2.3139 0.5881 31 1 5.2742 -4.7639 -0.8747 32 1 6.6229 -3.6028 -0.9242 33 1 6.7116 -5.1092 -2.8801 34 1 5.0559 -4.6357 -3.3320 35 1 7.3294 -2.6377 -5.4502 36 1 7.5669 -4.3299 -4.9519 37 1 6.9689 -4.8007 -8.4901 38 1 4.6233 -2.3323 -4.0386 39 1 5.9719 -1.1711 -4.0882 40 1 4.5347 -0.8258 -2.0827 41 1 6.1903 -1.2993 -1.6308 42 1 1.6964 -2.1374 -0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000616768708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:37 Heat of formation + Delta-G solvation = 24.568571 kcal Electronic energy + Delta-G solvation = -21352.727712 eV Core-core repulsion = 18331.612068 eV Total energy + Delta-G solvation = -3021.115644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42773 -39.95552 -36.92042 -34.88452 -34.45221 -32.71379 -31.75906 -29.86359 -28.69539 -27.59374 -25.61152 -24.59467 -23.88107 -23.26566 -21.63722 -20.65713 -18.47836 -17.50673 -17.35682 -17.10158 -16.53592 -16.50259 -15.84360 -15.70653 -15.42848 -15.25812 -15.02195 -14.64055 -14.03209 -13.84029 -13.60445 -13.56401 -13.36237 -13.33938 -13.09668 -12.86974 -12.68234 -12.48269 -12.25422 -12.14447 -12.08475 -11.81694 -11.68820 -11.37771 -10.61360 -10.38710 -10.30469 -9.97794 -9.30839 -9.03002 -8.16178 -6.35886 0.18192 0.36477 1.36027 1.37849 1.46305 2.37002 2.66866 3.08371 3.18052 3.34895 3.38010 3.69555 3.89041 4.03414 4.20007 4.23857 4.25255 4.27715 4.46007 4.50727 4.57057 4.59532 4.67975 4.70197 4.77591 4.81009 4.87875 4.93813 5.04512 5.08733 5.11780 5.22298 5.23180 5.27537 5.31432 5.43841 5.71795 5.83896 5.99021 6.02357 6.08233 6.27114 6.49651 6.84061 7.09855 7.35403 8.86476 Molecular weight = 275.17amu Principal moments of inertia in cm(-1) A = 0.020758 B = 0.004296 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.557658 B = 6515.546806 C = 7116.072841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.050 4.050 3 C -0.176 4.176 4 C 0.088 3.912 5 N -0.513 5.513 6 C 0.117 3.883 7 C 0.106 3.894 8 N -0.539 5.539 9 C 0.070 3.930 10 C 0.066 3.934 11 N -0.544 5.544 12 C 0.201 3.799 13 C -0.556 4.556 14 H 0.055 0.945 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.958 3.042 18 H -0.272 1.272 19 H -0.279 1.279 20 H -0.269 1.269 21 C 0.069 3.931 22 C 0.087 3.913 23 C -0.164 4.164 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.161 0.839 28 H 0.173 0.827 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.000 1.000 36 H 0.010 0.990 37 H 0.266 0.734 38 H 0.023 0.977 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.032 0.968 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.643 8.518 18.699 24.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.058 4.058 3 C -0.196 4.196 4 C -0.069 4.069 5 N -0.224 5.224 6 C -0.020 4.020 7 C -0.021 4.021 8 N -0.265 5.265 9 C -0.058 4.058 10 C -0.063 4.063 11 N -0.268 5.268 12 C 0.074 3.926 13 C -0.595 4.595 14 H 0.073 0.927 15 C -0.187 4.187 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.194 1.194 21 C -0.060 4.060 22 C -0.041 4.041 23 C -0.185 4.185 24 H 0.109 0.891 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.178 0.822 28 H 0.190 0.810 29 H 0.129 0.871 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.018 0.982 36 H 0.028 0.972 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.623 8.445 18.558 23.469 hybrid contribution -1.041 -0.239 -1.100 1.533 sum -12.664 8.205 17.458 23.075 Atomic orbital electron populations 1.20878 0.88141 1.04129 1.03837 1.20744 0.98368 0.92639 0.94062 1.22353 0.95277 0.99796 1.02195 1.23139 0.92846 0.96053 0.94889 1.67524 1.42511 0.98980 1.13375 1.21143 0.91963 0.93301 0.95595 1.21073 0.98636 0.93076 0.89308 1.62316 1.42830 1.07504 1.13826 1.22165 0.93779 0.94207 0.95643 1.21951 0.98021 0.92899 0.93389 1.62618 1.40506 1.07597 1.16112 1.19390 0.94789 0.94334 0.84100 1.21919 0.94281 1.43818 0.99510 0.92733 1.25819 0.99073 0.95282 0.98504 1.70064 1.25009 1.46985 1.14572 0.85607 0.79554 0.78816 0.77717 1.19708 1.20437 1.19372 1.21915 0.94236 0.93948 0.95897 1.21904 0.97615 0.92233 0.92396 1.22044 0.94238 1.00036 1.02145 0.89124 0.89882 0.90759 0.82185 0.81013 0.87069 0.93361 0.87931 0.94212 0.91372 0.95674 0.98169 0.97222 0.92537 0.95918 0.92568 0.91192 0.94985 0.83632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.06 71.24 0.72 -0.57 16 2 C -0.05 -0.90 5.92 -19.67 -0.12 -1.02 16 3 C -0.18 -3.03 9.82 22.36 0.22 -2.81 16 4 C 0.09 1.84 11.18 84.67 0.95 2.79 16 5 N -0.51 -13.79 8.74 -183.88 -1.61 -15.40 16 6 C 0.12 2.98 4.92 42.55 0.21 3.19 16 7 C 0.11 2.69 5.60 85.56 0.48 3.17 16 8 N -0.54 -17.15 4.85 -900.28 -4.37 -21.52 16 9 C 0.07 2.20 5.58 86.31 0.48 2.68 16 10 C 0.07 2.70 5.32 86.31 0.46 3.15 16 11 N -0.54 -25.30 4.92 -900.30 -4.43 -29.72 16 12 C 0.20 11.12 5.14 85.56 0.44 11.56 16 13 C -0.56 -32.06 7.67 25.60 0.20 -31.87 16 14 H 0.05 3.14 5.81 -2.91 -0.02 3.12 16 15 C 0.01 0.73 5.46 84.65 0.46 1.19 16 16 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 17 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.07 3.00 5.24 86.31 0.45 3.45 16 22 C 0.09 3.12 4.79 86.31 0.41 3.54 16 23 C -0.16 -3.53 9.43 22.36 0.21 -3.32 16 24 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.08 0.76 8.10 -2.38 -0.02 0.74 16 26 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 27 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 28 H 0.17 2.72 8.06 -2.91 -0.02 2.69 16 29 H 0.11 2.22 8.04 -2.39 -0.02 2.20 16 30 H 0.05 1.24 8.08 -2.39 -0.02 1.22 16 31 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.07 2.74 8.13 -2.39 -0.02 2.72 16 34 H 0.02 1.13 6.95 -2.39 -0.02 1.12 16 35 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 36 H 0.01 0.57 8.12 -2.38 -0.02 0.55 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.02 1.08 6.45 -2.39 -0.02 1.07 16 39 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.07 2.49 5.97 -2.39 -0.01 2.47 16 41 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -68.57 333.87 -1.54 -70.11 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.98 Total: 10.50 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: 5.57 Total: -4.86 kcal Atomic # 7 Polarization: -112.61 SS G_CDS: -10.12 Total: -122.73 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -68.57 -1.54 -70.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616768708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.675 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds