Wall clock time and date at job start Mon Mar 30 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47563 * 305.00337 * 5 4 3 7 7 N 1.46910 * 109.47127 * 65.00091 * 5 4 3 8 8 C 1.46900 * 111.00108 * 205.00462 * 7 5 4 9 9 C 1.53000 * 109.47136 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.46828 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.46792 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99750 * 359.97438 * 11 10 9 13 13 C 1.37870 * 119.99964 * 179.97438 * 11 10 9 14 14 N 1.31518 * 120.00225 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00028 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.47262 * 60.00187 * 15 13 11 17 17 H 1.48504 * 109.47050 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47002 * 299.99732 * 15 13 11 19 19 C 1.50700 * 109.47798 * 185.00026 * 5 4 3 20 20 C 1.38243 * 119.99881 * 279.73067 * 19 5 4 21 21 C 1.38236 * 119.99546 * 179.78181 * 20 19 5 22 22 C 1.38230 * 120.00068 * 0.44148 * 21 20 19 23 23 C 1.38228 * 120.00363 * 359.81337 * 22 21 20 24 24 C 1.38231 * 119.99932 * 359.97297 * 23 22 21 25 25 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 26 26 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 27 27 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 29 29 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 4 3 2 33 33 H 1.08998 * 109.47533 * 59.99948 * 4 3 2 34 34 H 1.00903 * 110.99433 * 328.95625 * 7 5 4 35 35 H 1.09001 * 109.46729 * 299.99669 * 8 7 5 36 36 H 1.08996 * 109.47288 * 59.99365 * 8 7 5 37 37 H 1.08998 * 109.46510 * 299.99661 * 9 8 7 38 38 H 1.08996 * 109.47126 * 59.99370 * 9 8 7 39 39 H 1.08998 * 109.47277 * 299.99165 * 10 9 8 40 40 H 1.08996 * 109.47803 * 59.99758 * 10 9 8 41 41 H 0.97001 * 120.00066 * 180.02562 * 14 13 11 42 42 H 1.07998 * 119.99681 * 359.97438 * 20 19 5 43 43 H 1.08001 * 119.99400 * 180.27071 * 21 20 19 44 44 H 1.08007 * 119.99792 * 179.83387 * 22 21 20 45 45 H 1.07998 * 120.00222 * 180.02562 * 23 22 21 46 46 H 1.08000 * 120.00023 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6450 3.4246 -0.8413 7 7 3.6919 3.5410 1.2559 8 6 3.6129 4.9981 1.0862 9 6 3.2077 5.6448 2.4123 10 6 3.1249 7.1622 2.2353 11 6 2.7252 7.7991 3.5413 12 1 2.5476 7.1831 4.4104 13 6 2.5862 9.1682 3.6266 14 7 2.8030 9.9184 2.5683 15 14 2.0900 9.9576 5.2453 16 1 3.1007 9.6343 6.2840 17 1 2.0109 11.4306 5.0739 18 1 0.7645 9.4357 5.6648 19 6 5.5818 2.8870 -0.1245 20 6 6.3679 2.6506 0.9879 21 6 7.7454 2.6480 0.8728 22 6 8.3370 2.8908 -0.3527 23 6 7.5511 3.1323 -1.4639 24 6 6.1735 3.1305 -1.3498 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6765 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.9337 0.9286 0.8891 33 1 3.9330 0.9289 -0.8908 34 1 2.8204 3.1697 1.6035 35 1 4.5857 5.3811 0.7779 36 1 2.8708 5.2354 0.3240 37 1 2.2351 5.2617 2.7209 38 1 3.9502 5.4073 3.1741 39 1 4.0973 7.5456 1.9264 40 1 2.3822 7.3993 1.4736 41 1 2.7056 10.8816 2.6284 42 1 5.9056 2.4650 1.9461 43 1 8.3594 2.4591 1.7409 44 1 9.4134 2.8914 -0.4421 45 1 8.0134 3.3215 -2.4215 46 1 5.5595 3.3188 -2.2181 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266901708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:07:27 Heat of formation + Delta-G solvation = -15.492058 kcal Electronic energy + Delta-G solvation = -20776.460224 eV Core-core repulsion = 17857.147764 eV Total energy + Delta-G solvation = -2919.312460 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.51117 -37.25542 -35.23607 -33.71212 -32.17652 -30.78010 -30.24292 -29.76963 -26.46226 -25.05021 -22.83362 -22.50691 -22.21335 -21.12374 -20.35715 -19.77573 -16.73703 -16.32119 -15.89308 -15.62137 -15.11812 -14.83493 -14.44757 -14.13859 -14.01870 -13.90596 -13.24946 -13.14612 -12.84414 -12.77425 -12.54468 -12.16817 -12.05517 -11.53738 -11.49674 -11.38722 -11.21518 -11.06868 -10.90544 -10.78866 -10.63952 -10.58085 -10.50631 -10.39428 -9.65623 -9.30625 -9.03273 -8.78457 -8.55969 -8.30653 -8.16854 -5.95843 -3.97966 1.46461 1.55368 3.35999 3.39999 3.42765 3.89328 4.33831 4.50095 4.62185 4.76665 4.81182 5.01753 5.03573 5.10143 5.21297 5.23645 5.30618 5.39757 5.39949 5.56579 5.60100 5.68049 5.72584 5.73450 5.79781 5.85463 5.90609 5.97061 6.03679 6.12077 6.13208 6.20119 6.23717 6.37837 6.56601 6.64417 6.69323 6.77801 6.89778 7.13252 7.18380 7.40143 7.68366 7.72781 7.88410 8.04762 8.47901 9.09084 9.65760 11.15595 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004022 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.280659 B = 6960.158732 C = 8801.371861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.125 4.125 4 C -0.115 4.115 5 C 0.124 3.876 6 H 0.050 0.950 7 N -0.684 5.684 8 C 0.061 3.939 9 C -0.106 4.106 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C -0.069 4.069 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.126 4.126 24 C -0.120 4.120 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.340 0.660 35 H 0.066 0.934 36 H 0.023 0.977 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.015 0.985 40 H 0.013 0.987 41 H 0.260 0.740 42 H 0.130 0.870 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -20.224 -8.435 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.163 4.163 4 C -0.153 4.153 5 C 0.014 3.986 6 H 0.068 0.932 7 N -0.316 5.316 8 C -0.067 4.067 9 C -0.144 4.144 10 C -0.015 4.015 11 C -0.557 4.557 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.070 4.070 20 C -0.102 4.102 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.144 4.144 24 C -0.138 4.138 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.031 0.969 41 H 0.070 0.930 42 H 0.148 0.852 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.135 0.865 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 4.487 -20.019 -8.245 22.111 hybrid contribution -1.007 0.794 0.280 1.312 sum 3.481 -19.225 -7.965 21.099 Atomic orbital electron populations 1.21788 0.95942 1.01417 1.01998 1.21495 0.95791 0.96751 1.01894 1.21703 0.95299 0.97001 1.02291 1.21748 0.95111 0.95574 1.02821 1.20424 0.91280 0.94556 0.92390 0.93249 1.60566 1.38161 1.05521 1.27393 1.22142 1.00249 0.85613 0.98718 1.21607 0.99603 0.98597 0.94549 1.19053 0.97045 0.88466 0.96946 1.21220 1.46204 0.91774 0.96492 0.92754 1.25025 0.95588 0.97495 0.96375 1.69962 1.49805 1.05055 1.28810 0.86665 0.79108 0.78103 0.84160 1.20232 1.21322 1.20278 1.19855 0.95143 0.98818 0.93202 1.21059 0.92806 0.97449 0.98871 1.21193 0.95194 1.00785 0.97372 1.21092 0.99475 1.00729 0.93204 1.21023 0.93763 1.01137 0.98508 1.21013 0.94862 1.00798 0.97175 0.92557 0.92819 0.92952 0.92239 0.91964 0.92054 0.91572 0.90907 0.91475 0.84012 0.91579 0.95843 0.93765 0.92622 0.96627 0.96881 0.93013 0.85198 0.86414 0.86631 0.86539 0.86630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.13 -1.18 5.04 -26.73 -0.13 -1.31 16 4 C -0.11 -1.16 4.78 -26.74 -0.13 -1.29 16 5 C 0.12 1.54 2.25 -68.86 -0.15 1.39 16 6 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 7 N -0.68 -9.83 5.54 -107.95 -0.60 -10.43 16 8 C 0.06 1.09 5.48 -3.82 -0.02 1.07 16 9 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 10 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 11 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 12 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 15 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.07 -0.92 4.71 -104.62 -0.49 -1.41 16 20 C -0.08 -1.12 9.33 -39.58 -0.37 -1.49 16 21 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 22 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 23 C -0.13 -1.46 10.05 -39.59 -0.40 -1.86 16 24 C -0.12 -1.49 9.67 -39.58 -0.38 -1.87 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.34 4.55 6.47 -39.29 -0.25 4.29 16 35 H 0.07 1.27 8.00 -51.93 -0.42 0.85 16 36 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 42 H 0.13 1.75 7.71 -52.49 -0.40 1.35 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 45 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.12 1.26 8.04 -52.49 -0.42 0.84 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -30.58 372.17 -11.16 -41.74 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -8.53 Total: 1.15 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -3.36 Total: -28.32 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.14 Total: -37.18 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.58 -11.16 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266901708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.251 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds