Wall clock time and date at job start Mon Mar 30 2020 20:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38260 * 120.00106 * 2 1 4 4 C 1.38212 * 120.00041 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00085 * 359.73665 * 4 3 2 6 6 C 1.50693 * 120.00010 * 180.28042 * 5 4 3 7 7 H 1.09000 * 109.47203 * 200.23944 * 6 5 4 8 8 C 1.53000 * 109.47293 * 80.23607 * 6 5 4 9 9 N 1.46903 * 109.47164 * 320.23747 * 6 5 4 10 10 C 1.46907 * 110.99946 * 204.99947 * 9 6 5 11 11 H 1.08993 * 109.47379 * 325.00283 * 10 9 6 12 12 C 1.53003 * 109.46848 * 84.99812 * 10 9 6 13 13 C 1.52999 * 109.47204 * 204.99958 * 10 9 6 14 14 C 1.53000 * 109.47229 * 64.99882 * 13 10 9 15 15 C 1.50691 * 109.46908 * 179.97438 * 14 13 10 16 16 H 1.08000 * 120.00636 * 0.02562 * 15 14 13 17 17 C 1.37886 * 119.99517 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99859 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00167 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47079 * 89.99753 * 19 17 15 21 21 H 1.48498 * 109.47071 * 209.99520 * 19 17 15 22 22 H 1.48496 * 109.47204 * 330.00130 * 19 17 15 23 23 C 1.38211 * 119.99784 * 0.52159 * 5 4 3 24 24 C 1.38214 * 120.00231 * 179.97438 * 2 1 3 25 25 C 1.50703 * 119.99514 * 0.02562 * 24 2 1 26 26 H 1.08998 * 109.46845 * 270.02169 * 1 2 3 27 27 H 1.08997 * 109.46777 * 30.02183 * 1 2 3 28 28 H 1.08999 * 109.46887 * 150.02224 * 1 2 3 29 29 H 1.08001 * 119.99581 * 359.97438 * 3 2 1 30 30 H 1.08004 * 119.99477 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46784 * 59.99804 * 8 6 5 32 32 H 1.09003 * 109.47130 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.46813 * 300.00086 * 8 6 5 34 34 H 1.00889 * 111.00341 * 81.04661 * 9 6 5 35 35 H 1.09001 * 109.47060 * 60.00285 * 12 10 9 36 36 H 1.09000 * 109.46924 * 179.97438 * 12 10 9 37 37 H 1.08995 * 109.47488 * 299.99830 * 12 10 9 38 38 H 1.09000 * 109.46881 * 185.00121 * 13 10 9 39 39 H 1.09000 * 109.46665 * 305.00116 * 13 10 9 40 40 H 1.09000 * 109.46929 * 300.00555 * 14 13 10 41 41 H 1.09005 * 109.46560 * 60.00049 * 14 13 10 42 42 H 0.96996 * 120.00052 * 180.02562 * 18 17 15 43 43 H 1.08002 * 120.00200 * 179.76459 * 23 5 4 44 44 H 1.08999 * 109.46667 * 270.01841 * 25 24 2 45 45 H 1.08988 * 109.47584 * 30.02053 * 25 24 2 46 46 H 1.09000 * 109.47013 * 150.02569 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0066 6 6 5.7787 0.0000 0.0135 7 1 6.1437 -0.9650 -0.3380 8 6 6.2821 0.2480 1.4369 9 7 6.2724 1.0626 -0.8726 10 6 7.6221 0.7537 -1.3636 11 1 8.1824 0.2362 -0.5850 12 6 7.5224 -0.1412 -2.6006 13 6 8.3410 2.0534 -1.7309 14 6 8.5515 2.8938 -0.4699 15 6 9.2601 4.1736 -0.8317 16 1 9.5327 4.3684 -1.8584 17 6 9.5596 5.0964 0.1481 18 7 10.1785 6.2131 -0.1675 19 14 9.0875 4.7600 1.9238 20 1 10.1980 4.0466 2.6046 21 1 8.8258 6.0460 2.6186 22 1 7.8637 3.9196 1.9600 23 6 3.5807 -1.1969 0.0012 24 6 2.1981 -1.1969 0.0005 25 6 1.4446 -2.5020 0.0005 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0010 31 1 5.9157 -0.5404 2.0944 32 1 7.3721 0.2476 1.4420 33 1 5.9171 1.2131 1.7883 34 1 6.2526 1.9584 -0.4089 35 1 6.9621 0.3764 -3.3792 36 1 8.5238 -0.3700 -2.9652 37 1 7.0103 -1.0671 -2.3389 38 1 9.3075 1.8202 -2.1777 39 1 7.7366 2.6137 -2.4443 40 1 7.5850 3.1269 -0.0231 41 1 9.1559 2.3334 0.2435 42 1 10.3894 6.8622 0.5217 43 1 4.1207 -2.1323 0.0021 44 1 1.2622 -2.8162 1.0282 45 1 0.4926 -2.3720 -0.5139 46 1 2.0340 -3.2619 -0.5125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172485708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:03 Heat of formation + Delta-G solvation = -6.260719 kcal Electronic energy + Delta-G solvation = -21359.504896 eV Core-core repulsion = 18440.592737 eV Total energy + Delta-G solvation = -2918.912159 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.82645 -37.69946 -34.68341 -32.90525 -32.30154 -31.50340 -29.90401 -28.15021 -27.38972 -26.25342 -25.27042 -22.55199 -22.11038 -21.09385 -19.66539 -19.45157 -16.87953 -16.10680 -15.99012 -15.12693 -15.01734 -14.54817 -14.30405 -14.17198 -13.57443 -13.24617 -13.10106 -13.04200 -12.94059 -12.81544 -12.57163 -12.49808 -12.21881 -12.01505 -11.82707 -11.63153 -11.49011 -11.35371 -11.18548 -11.00130 -10.83132 -10.65022 -10.46294 -9.96914 -9.77235 -9.44256 -9.18844 -8.68714 -8.55349 -8.35836 -8.06383 -6.05348 -4.03064 1.41237 1.46896 3.27892 3.35834 3.37389 3.76644 4.41758 4.43171 4.74361 4.80489 4.91814 5.01717 5.11417 5.18855 5.28212 5.30548 5.34563 5.40929 5.45743 5.52897 5.57069 5.64143 5.68072 5.71215 5.76086 5.77502 5.84431 5.96022 6.10094 6.15514 6.19432 6.26440 6.28560 6.39455 6.44638 6.54363 6.66367 6.74748 6.75559 6.85614 7.10113 7.27609 7.31051 7.53136 7.75409 7.79904 8.53695 9.00532 9.57137 11.08276 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021304 B = 0.004071 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.019775 B = 6876.416516 C = 7461.272555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.098 4.098 3 C -0.118 4.118 4 C -0.098 4.098 5 C -0.059 4.059 6 C 0.121 3.879 7 H 0.082 0.918 8 C -0.179 4.179 9 N -0.679 5.679 10 C 0.080 3.920 11 H 0.039 0.961 12 C -0.136 4.136 13 C -0.106 4.106 14 C -0.014 4.014 15 C -0.518 4.518 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.879 3.121 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.267 1.267 23 C -0.115 4.115 24 C -0.092 4.092 25 C -0.114 4.114 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.350 0.650 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.013 0.987 41 H 0.007 0.993 42 H 0.263 0.737 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.068 -16.963 1.636 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.116 4.116 5 C -0.060 4.060 6 C 0.011 3.989 7 H 0.100 0.900 8 C -0.238 4.238 9 N -0.313 5.313 10 C -0.029 4.029 11 H 0.057 0.943 12 C -0.194 4.194 13 C -0.144 4.144 14 C -0.051 4.051 15 C -0.556 4.556 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.191 1.191 23 C -0.134 4.134 24 C -0.092 4.092 25 C -0.171 4.171 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.172 0.828 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.031 0.969 41 H 0.025 0.975 42 H 0.072 0.928 43 H 0.134 0.866 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.295 -17.030 1.143 24.299 hybrid contribution 0.478 0.242 1.820 1.898 sum -16.817 -16.787 2.963 23.946 Atomic orbital electron populations 1.20818 0.91736 1.02549 1.01974 1.19679 0.95639 0.92767 1.01690 1.21000 0.94285 0.97234 1.01036 1.20955 0.93690 0.98116 0.98829 1.19788 0.94975 0.92979 0.98265 1.20450 0.90524 0.96555 0.91367 0.90002 1.22500 1.01690 1.02291 0.97281 1.60708 1.24694 1.05038 1.40828 1.21652 0.88069 0.97312 0.95885 0.94304 1.21786 1.00708 0.98684 0.98186 1.21658 0.99077 0.93625 1.00030 1.19599 0.96078 0.95754 0.93668 1.21135 1.37045 1.00991 0.96429 0.90996 1.25046 0.94657 0.94934 0.98875 1.69915 1.41525 1.09158 1.33636 0.86788 0.79435 0.77650 0.85432 1.20422 1.21388 1.19130 1.20800 0.93297 0.97392 1.01904 1.19630 0.93563 0.94657 1.01339 1.20816 0.99990 0.94259 1.01994 0.91542 0.91815 0.91454 0.86357 0.85944 0.92339 0.91994 0.92156 0.82833 0.92238 0.92914 0.93785 0.92117 0.91845 0.96905 0.97452 0.92762 0.86561 0.91513 0.91393 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.61 36.01 0.35 -0.61 16 2 C -0.10 -1.10 5.88 -104.62 -0.62 -1.72 16 3 C -0.12 -1.45 9.70 -39.58 -0.38 -1.83 16 4 C -0.10 -1.34 9.33 -39.58 -0.37 -1.71 16 5 C -0.06 -0.80 4.96 -104.63 -0.52 -1.32 16 6 C 0.12 1.66 2.60 -68.87 -0.18 1.48 16 7 H 0.08 1.07 6.97 -51.93 -0.36 0.71 16 8 C -0.18 -2.43 9.12 37.16 0.34 -2.09 16 9 N -0.68 -10.69 5.51 -100.95 -0.56 -11.24 16 10 C 0.08 1.30 2.46 -67.71 -0.17 1.13 16 11 H 0.04 0.63 7.11 -51.93 -0.37 0.26 16 12 C -0.14 -1.92 9.40 37.16 0.35 -1.57 16 13 C -0.11 -2.08 4.74 -26.73 -0.13 -2.21 16 14 C -0.01 -0.32 3.87 -27.89 -0.11 -0.42 16 15 C -0.52 -14.74 9.66 -34.44 -0.33 -15.08 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 18 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 19 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 23 C -0.12 -1.39 9.33 -39.58 -0.37 -1.76 16 24 C -0.09 -1.03 5.88 -104.62 -0.62 -1.64 16 25 C -0.11 -0.94 9.60 36.01 0.35 -0.59 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 28 H 0.07 0.49 5.95 -51.93 -0.31 0.18 16 29 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.12 1.73 7.24 -52.48 -0.38 1.35 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.88 7.43 -51.93 -0.39 0.50 16 33 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.35 6.01 5.56 -39.30 -0.22 5.79 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.04 0.57 7.43 -51.93 -0.39 0.19 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.01 0.30 5.48 -51.93 -0.28 0.01 16 41 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.12 1.21 8.04 -52.49 -0.42 0.79 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.49 5.95 -51.94 -0.31 0.18 16 46 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -30.45 359.67 -9.58 -40.03 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -8.05 Total: 4.06 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -2.50 Total: -28.11 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.22 Total: -38.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.45 -9.58 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.772 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds