Wall clock time and date at job start Mon Mar 30 2020 20:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.50698 * 109.47126 * 2 1 4 4 C 1.38227 * 120.00263 * 90.00126 * 3 2 1 5 5 C 1.38236 * 120.00174 * 179.97438 * 4 3 2 6 6 C 1.38236 * 119.99901 * 359.95518 * 5 4 3 7 7 C 1.50698 * 120.00164 * 180.02562 * 6 5 4 8 8 H 1.09003 * 109.47206 * 339.99403 * 7 6 5 9 9 C 1.52999 * 109.47334 * 99.99593 * 7 6 5 10 10 N 1.46900 * 109.46975 * 220.00118 * 7 6 5 11 11 C 1.46897 * 111.00250 * 86.70234 * 10 7 6 12 12 H 1.08997 * 109.47183 * 322.26648 * 11 10 7 13 13 C 1.53005 * 109.47330 * 82.26750 * 11 10 7 14 14 C 1.53000 * 109.47077 * 202.26651 * 11 10 7 15 15 C 1.53004 * 109.47174 * 64.99675 * 14 11 10 16 16 C 1.50697 * 109.46922 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00539 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99876 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00341 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99881 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.46950 * 90.00255 * 20 18 16 22 22 H 1.48500 * 109.47329 * 209.99934 * 20 18 16 23 23 H 1.48500 * 109.47344 * 330.00285 * 20 18 16 24 24 C 1.38235 * 119.99681 * 0.27460 * 6 5 4 25 25 C 1.38227 * 120.00281 * 359.51521 * 24 6 5 26 26 H 1.09002 * 109.46707 * 300.00359 * 1 2 3 27 27 H 1.08995 * 109.46623 * 60.00074 * 1 2 3 28 28 H 1.08999 * 109.46792 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46855 * 239.99456 * 2 1 3 30 30 H 1.09002 * 109.46473 * 119.99563 * 2 1 3 31 31 H 1.08002 * 120.00160 * 359.97425 * 4 3 2 32 32 H 1.07997 * 120.00476 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.47275 * 175.56751 * 9 7 6 34 34 H 1.08997 * 109.47287 * 295.57223 * 9 7 6 35 35 H 1.09001 * 109.46720 * 55.56963 * 9 7 6 36 36 H 1.00908 * 110.99519 * 210.65608 * 10 7 6 37 37 H 1.08998 * 109.46795 * 184.53991 * 13 11 10 38 38 H 1.08999 * 109.46809 * 304.53918 * 13 11 10 39 39 H 1.08995 * 109.46643 * 64.54026 * 13 11 10 40 40 H 1.09009 * 109.47236 * 304.99874 * 14 11 10 41 41 H 1.08996 * 109.47019 * 184.99843 * 14 11 10 42 42 H 1.09001 * 109.46576 * 60.00156 * 15 14 11 43 43 H 1.08996 * 109.47284 * 300.00005 * 15 14 11 44 44 H 0.96998 * 120.00128 * 180.02562 * 19 18 16 45 45 H 1.08006 * 119.99662 * 179.72768 * 24 6 5 46 46 H 1.07999 * 120.00560 * 180.25029 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2628 2.0724 1.1970 5 6 2.7241 3.3756 1.1970 6 6 2.9559 4.0267 -0.0002 7 6 3.4593 5.4471 -0.0002 8 1 3.2486 5.9073 0.9651 9 6 4.9688 5.4532 -0.2496 10 7 2.7845 6.2057 -1.0619 11 6 1.5127 6.7637 -0.5833 12 1 1.0296 6.0484 0.0823 13 6 1.7801 8.0656 0.1748 14 6 0.5987 7.0472 -1.7771 15 6 0.2304 5.7294 -2.4617 16 6 -0.6692 6.0088 -3.6380 17 1 -0.9506 7.0245 -3.8735 18 6 -1.1341 4.9674 -4.4129 19 7 -1.9197 5.2110 -5.4391 20 14 -0.6480 3.2104 -4.0053 21 1 -1.6404 2.6273 -3.0669 22 1 -0.6128 2.4045 -5.2521 23 1 0.6955 3.2025 -3.3726 24 6 2.7209 3.3766 -1.1972 25 6 2.2638 2.0721 -1.1972 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 2.0825 1.5635 2.1324 32 1 2.9038 3.8849 2.1323 33 1 5.3200 6.4821 -0.3280 34 1 5.4759 4.9584 0.5787 35 1 5.1860 4.9235 -1.1771 36 1 3.3842 6.9316 -1.4247 37 1 0.8472 8.4374 0.5986 38 1 2.4946 7.8790 0.9765 39 1 2.1889 8.8078 -0.5109 40 1 1.1171 7.6927 -2.4864 41 1 -0.3082 7.5426 -1.4307 42 1 -0.2879 5.0841 -1.7525 43 1 1.1374 5.2340 -2.8081 44 1 -2.2470 4.4784 -5.9841 45 1 2.8978 3.8868 -2.1326 46 1 2.0840 1.5628 -2.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487053.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:11 Heat of formation + Delta-G solvation = -23.384470 kcal Electronic energy + Delta-G solvation = -22066.783982 eV Core-core repulsion = 19147.129281 eV Total energy + Delta-G solvation = -2919.654701 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.61973 -38.66978 -36.02913 -34.92475 -33.70798 -31.81254 -31.68379 -29.69128 -28.77240 -27.07876 -25.17144 -23.57347 -23.00407 -22.52827 -21.34122 -20.93879 -18.83195 -17.23406 -17.02368 -16.34119 -16.19428 -15.90775 -15.75061 -15.04132 -14.76945 -14.59780 -14.49778 -14.25397 -14.02950 -13.92806 -13.89948 -13.74448 -13.33152 -13.20698 -12.90739 -12.69538 -12.47775 -12.31358 -12.21089 -12.04616 -11.98161 -11.66915 -11.62688 -11.54520 -11.47426 -11.32050 -11.06083 -10.73468 -9.70102 -9.32407 -9.14231 -8.28305 -6.29353 0.50982 0.62559 1.32271 1.33297 1.50425 2.36870 2.90856 3.08265 3.30815 3.84710 3.98418 4.00362 4.09150 4.21143 4.28229 4.32471 4.40318 4.46181 4.46818 4.48989 4.63720 4.72374 4.74008 4.77123 4.81839 4.93280 4.97377 5.01187 5.04947 5.08507 5.11020 5.23592 5.25810 5.29372 5.32097 5.35476 5.42426 5.60953 5.62731 5.70754 5.78376 5.81418 5.84225 6.22759 6.33473 6.35237 6.69634 6.79813 7.35035 8.88457 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.010697 B = 0.008520 C = 0.005292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.941627 B = 3285.596185 C = 5289.899360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 C -0.096 4.096 4 C -0.126 4.126 5 C -0.120 4.120 6 C -0.086 4.086 7 C 0.126 3.874 8 H 0.063 0.937 9 C -0.141 4.141 10 N -0.685 5.685 11 C 0.096 3.904 12 H 0.060 0.940 13 C -0.170 4.170 14 C -0.086 4.086 15 C 0.011 3.989 16 C -0.526 4.526 17 H 0.029 0.971 18 C 0.005 3.995 19 N -0.955 5.955 20 Si 0.940 3.060 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.234 1.234 24 C -0.093 4.093 25 C -0.147 4.147 26 H 0.057 0.943 27 H 0.029 0.971 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.348 0.652 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.043 0.957 42 H -0.007 1.007 43 H 0.032 0.968 44 H 0.263 0.737 45 H 0.109 0.891 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.365 -5.788 17.794 23.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 C -0.096 4.096 4 C -0.144 4.144 5 C -0.138 4.138 6 C -0.086 4.086 7 C 0.017 3.983 8 H 0.081 0.919 9 C -0.199 4.199 10 N -0.318 5.318 11 C -0.014 4.014 12 H 0.078 0.922 13 C -0.229 4.229 14 C -0.124 4.124 15 C -0.026 4.026 16 C -0.564 4.564 17 H 0.047 0.953 18 C -0.191 4.191 19 N -0.597 5.597 20 Si 0.764 3.236 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.156 1.156 24 C -0.111 4.111 25 C -0.165 4.165 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.169 0.831 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.011 0.989 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.127 0.873 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.006 -6.404 17.378 23.220 hybrid contribution -0.364 0.177 -0.337 0.526 sum 13.642 -6.228 17.041 22.700 Atomic orbital electron populations 1.21773 0.95197 1.02398 1.01258 1.20565 0.95728 0.91847 1.03674 1.20125 0.99165 0.97317 0.93014 1.21187 1.00325 0.95118 0.97724 1.21247 0.99679 0.95181 0.97719 1.20036 0.99604 0.96239 0.92762 1.20408 0.94096 0.89846 0.93947 0.91907 1.21901 0.92689 1.02822 1.02457 1.60364 1.05740 1.30561 1.35132 1.21460 0.90410 0.94890 0.94662 0.92209 1.22396 1.02330 0.97606 1.00576 1.21349 0.97277 0.97493 0.96290 1.19275 0.95117 0.95155 0.93102 1.21691 1.28871 0.93494 1.12363 0.95263 1.25933 0.94720 1.03833 0.94611 1.70078 1.36419 1.33528 1.19668 0.85807 0.81104 0.79263 0.77378 1.20325 1.21460 1.15649 1.20994 0.97809 0.93667 0.98671 1.21207 1.01590 0.95804 0.97939 0.92404 0.95135 0.90516 0.91087 0.88899 0.83995 0.84171 0.90852 0.90854 0.92941 0.83137 0.92187 0.91395 0.92018 0.93393 0.93823 0.98890 0.95007 0.92821 0.87293 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.90 71.99 0.71 -2.70 16 2 C -0.08 -1.75 6.06 29.85 0.18 -1.57 16 3 C -0.10 -2.60 5.13 -19.87 -0.10 -2.70 16 4 C -0.13 -2.98 9.70 22.27 0.22 -2.76 16 5 C -0.12 -2.87 9.67 22.27 0.22 -2.65 16 6 C -0.09 -2.37 4.69 -19.87 -0.09 -2.46 16 7 C 0.13 2.93 2.62 44.17 0.12 3.05 16 8 H 0.06 1.30 6.76 -2.39 -0.02 1.28 16 9 C -0.14 -2.61 9.19 71.98 0.66 -1.95 16 10 N -0.69 -19.09 4.74 -473.31 -2.24 -21.33 16 11 C 0.10 2.91 2.41 44.92 0.11 3.01 16 12 H 0.06 1.97 7.73 -2.39 -0.02 1.96 16 13 C -0.17 -3.91 9.17 71.98 0.66 -3.25 16 14 C -0.09 -3.46 4.83 30.60 0.15 -3.31 16 15 C 0.01 0.54 3.93 29.85 0.12 0.66 16 16 C -0.53 -32.06 9.66 25.60 0.25 -31.81 16 17 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 18 C 0.00 0.30 5.47 84.66 0.46 0.77 16 19 N -0.96 -62.89 13.96 21.45 0.30 -62.59 16 20 Si 0.94 47.68 27.47 68.60 1.88 49.56 16 21 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 23 H -0.23 -11.05 6.54 99.48 0.65 -10.40 16 24 C -0.09 -3.09 9.33 22.27 0.21 -2.89 16 25 C -0.15 -4.78 9.70 22.27 0.22 -4.56 16 26 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 30 H 0.09 1.54 8.09 -2.39 -0.02 1.52 16 31 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.14 2.54 8.04 -2.91 -0.02 2.52 16 33 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.35 8.52 8.06 -89.69 -0.72 7.80 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.28 7.19 -2.39 -0.02 1.26 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 42 H -0.01 -0.37 7.57 -2.39 -0.02 -0.39 16 43 H 0.03 1.59 6.50 -2.39 -0.02 1.57 16 44 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 45 H 0.11 4.03 7.40 -2.91 -0.02 4.01 16 46 H 0.10 3.47 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -71.30 367.51 4.15 -67.15 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.14 Total: 22.35 kcal Atomic # 6 Polarization: -59.21 SS G_CDS: 4.07 Total: -55.14 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -1.94 Total: -83.92 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.88 Total: 49.56 kcal Total: -71.30 4.15 -67.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487053.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.764 kcal (2) G-P(sol) polarization free energy of solvation -71.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds