Wall clock time and date at job start Mon Mar 30 2020 20:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38234 * 119.99846 * 0.50808 * 5 4 3 7 7 C 1.50704 * 120.00467 * 179.72287 * 6 5 4 8 8 H 1.08992 * 109.47254 * 160.01618 * 7 6 5 9 9 C 1.52995 * 109.47009 * 280.02365 * 7 6 5 10 10 N 1.46905 * 109.46481 * 40.02185 * 7 6 5 11 11 C 1.46897 * 110.99739 * 155.00293 * 10 7 6 12 12 H 1.09009 * 109.47398 * 34.99607 * 11 10 7 13 13 C 1.52997 * 109.47240 * 274.99832 * 11 10 7 14 14 C 1.52996 * 109.47050 * 154.99658 * 11 10 7 15 15 C 1.52996 * 109.47447 * 294.99854 * 14 11 10 16 16 C 1.50699 * 109.47369 * 179.97438 * 15 14 11 17 17 H 1.08004 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00087 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00085 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99791 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47346 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47049 * 120.00203 * 20 18 16 23 23 H 1.48502 * 109.47111 * 239.99676 * 20 18 16 24 24 C 1.38241 * 119.99835 * 359.74567 * 6 5 4 25 25 C 1.38230 * 119.99983 * 0.02562 * 24 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00386 * 180.23261 * 5 4 3 33 33 H 1.09006 * 109.47209 * 59.99522 * 9 7 6 34 34 H 1.09003 * 109.47145 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.47451 * 299.99539 * 9 7 6 36 36 H 1.00904 * 110.99622 * 278.95449 * 10 7 6 37 37 H 1.08998 * 109.47117 * 180.02562 * 13 11 10 38 38 H 1.08994 * 109.47253 * 300.00099 * 13 11 10 39 39 H 1.09002 * 109.47360 * 60.00039 * 13 11 10 40 40 H 1.09004 * 109.47452 * 55.00536 * 14 11 10 41 41 H 1.09005 * 109.47132 * 174.99987 * 14 11 10 42 42 H 1.08999 * 109.47054 * 300.00058 * 15 14 11 43 43 H 1.09000 * 109.47268 * 59.99755 * 15 14 11 44 44 H 0.96991 * 120.00239 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99721 * 179.97438 * 24 6 5 46 46 H 1.08007 * 119.99843 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4581 5.4476 0.0001 8 1 3.2481 5.9074 0.9658 9 6 4.9674 5.4539 -0.2504 10 7 2.7824 6.2064 -1.0608 11 6 2.7641 7.6422 -0.7511 12 1 3.6848 7.9144 -0.2348 13 6 1.5649 7.9553 0.1460 14 6 2.6521 8.4428 -2.0500 15 6 3.9106 8.2265 -2.8927 16 6 3.8000 9.0146 -4.1724 17 1 2.9201 9.6105 -4.3653 18 6 4.8220 8.9748 -5.0971 19 7 5.8932 8.2488 -4.8625 20 14 4.6851 9.9523 -6.6831 21 1 3.3911 10.6802 -6.7057 22 1 5.8031 10.9264 -6.7623 23 1 4.7521 9.0266 -7.8423 24 6 2.7240 3.3755 1.1972 25 6 2.2633 2.0722 1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0927 1.5598 -2.1325 32 1 2.9050 3.8844 -2.1324 33 1 5.1773 4.9940 -1.2161 34 1 5.3313 6.4813 -0.2507 35 1 5.4687 4.8908 0.5368 36 1 3.2122 6.0353 -1.9576 37 1 1.5511 9.0207 0.3754 38 1 0.6443 7.6832 -0.3701 39 1 1.6447 7.3849 1.0715 40 1 1.7784 8.1078 -2.6092 41 1 2.5492 9.5024 -1.8161 42 1 4.7842 8.5617 -2.3335 43 1 4.0136 7.1669 -3.1266 44 1 6.6120 8.2206 -5.5131 45 1 2.9044 3.8844 2.1325 46 1 2.0834 1.5630 2.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172487054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:16 Heat of formation + Delta-G solvation = -12.134257 kcal Electronic energy + Delta-G solvation = -21129.882866 eV Core-core repulsion = 18210.716011 eV Total energy + Delta-G solvation = -2919.166855 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.60894 -37.51253 -34.79650 -33.22949 -32.19749 -30.79279 -29.57588 -28.70159 -27.65331 -25.12360 -24.22517 -22.65084 -21.93950 -21.24982 -19.98792 -19.49188 -16.56830 -16.11878 -15.80027 -15.24785 -14.90244 -14.49875 -14.39678 -13.82418 -13.63829 -13.39997 -13.21386 -12.97159 -12.78374 -12.76520 -12.48451 -12.26935 -11.80410 -11.65894 -11.49374 -11.40199 -11.28920 -11.16539 -10.99395 -10.92596 -10.72537 -10.56925 -10.44768 -10.20168 -9.75940 -9.26826 -9.02184 -8.75568 -8.37962 -8.35797 -7.92785 -6.01417 -4.03197 1.48587 1.57555 3.30338 3.38108 3.42483 3.87998 4.45469 4.56821 4.72541 4.81845 5.06526 5.12164 5.15045 5.24565 5.34074 5.38409 5.44537 5.50977 5.56921 5.63964 5.65338 5.73872 5.76445 5.84547 5.90357 5.98284 6.02917 6.08719 6.17623 6.21595 6.26169 6.38425 6.43981 6.53221 6.54021 6.61520 6.72566 6.85531 6.93175 7.09179 7.16652 7.55489 7.62241 7.80336 7.91775 7.99273 8.42221 9.03708 9.61094 11.09708 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.003584 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.660736 B = 7811.073343 C = 8351.661457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.094 4.094 4 C -0.119 4.119 5 C -0.092 4.092 6 C -0.060 4.060 7 C 0.121 3.879 8 H 0.080 0.920 9 C -0.176 4.176 10 N -0.679 5.679 11 C 0.083 3.917 12 H 0.039 0.961 13 C -0.136 4.136 14 C -0.115 4.115 15 C 0.022 3.978 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.895 5.895 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.117 4.117 25 C -0.121 4.121 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.117 0.883 32 H 0.124 0.876 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.352 0.648 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.053 0.947 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.116 0.884 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.054 -13.375 12.658 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.094 4.094 4 C -0.137 4.137 5 C -0.111 4.111 6 C -0.061 4.061 7 C 0.011 3.989 8 H 0.098 0.902 9 C -0.235 4.235 10 N -0.313 5.313 11 C -0.027 4.027 12 H 0.057 0.943 13 C -0.194 4.194 14 C -0.152 4.152 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.136 4.136 25 C -0.139 4.139 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.175 0.825 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.523 -13.515 12.815 20.087 hybrid contribution 1.028 0.786 -1.097 1.696 sum -6.495 -12.729 11.718 18.481 Atomic orbital electron populations 1.21746 0.94937 1.01351 1.02321 1.20501 0.96050 0.93009 1.02430 1.19802 1.00198 0.96102 0.93330 1.21007 1.00362 0.95050 0.97274 1.20989 0.97934 0.93911 0.98227 1.19849 0.97957 0.95280 0.92995 1.20453 0.91527 0.90469 0.96495 0.90232 1.22471 0.96244 1.02535 1.02268 1.60726 1.57791 1.07554 1.05223 1.21598 0.96490 0.87353 0.97232 0.94323 1.21797 0.99021 0.99834 0.98728 1.21827 1.01282 0.98090 0.94047 1.19119 0.91623 0.96720 0.94086 1.21282 1.03259 1.28158 1.02938 0.92660 1.25021 0.95413 0.95603 0.98409 1.69963 1.07416 1.40396 1.35688 0.86558 0.78015 0.79968 0.83608 1.19742 1.21085 1.21027 1.20937 1.00384 0.94879 0.97397 1.20869 1.00964 0.94938 0.97167 0.92467 0.92642 0.92700 0.91432 0.91285 0.86481 0.85823 0.91938 0.91848 0.92621 0.82515 0.93096 0.92419 0.93864 0.92501 0.92781 0.96987 0.96690 0.93118 0.86574 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.08 -0.74 6.07 -27.89 -0.17 -0.91 16 3 C -0.09 -1.09 5.13 -104.63 -0.54 -1.62 16 4 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 5 C -0.09 -1.31 9.32 -39.59 -0.37 -1.68 16 6 C -0.06 -0.84 4.96 -104.62 -0.52 -1.36 16 7 C 0.12 1.76 2.60 -68.86 -0.18 1.58 16 8 H 0.08 1.11 6.97 -51.93 -0.36 0.75 16 9 C -0.18 -2.61 9.12 37.16 0.34 -2.27 16 10 N -0.68 -11.28 5.51 -100.96 -0.56 -11.83 16 11 C 0.08 1.42 2.46 -67.72 -0.17 1.25 16 12 H 0.04 0.68 7.11 -51.92 -0.37 0.31 16 13 C -0.14 -2.02 9.40 37.16 0.35 -1.67 16 14 C -0.11 -2.34 4.74 -26.74 -0.13 -2.47 16 15 C 0.02 0.54 4.80 -27.89 -0.13 0.41 16 16 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.12 -1.46 9.67 -39.58 -0.38 -1.84 16 25 C -0.12 -1.39 9.70 -39.59 -0.38 -1.78 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 32 H 0.12 1.84 7.25 -52.49 -0.38 1.46 16 33 H 0.06 0.99 8.13 -51.93 -0.42 0.57 16 34 H 0.06 1.01 7.43 -51.93 -0.39 0.62 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 6.49 5.56 -39.29 -0.22 6.27 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.59 7.43 -51.93 -0.39 0.20 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.01 0.39 6.43 -51.93 -0.33 0.06 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.12 1.24 8.04 -52.49 -0.42 0.82 16 46 H 0.11 1.07 8.06 -52.48 -0.42 0.65 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -29.27 367.75 -10.32 -39.58 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.31 Total: 4.36 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -2.71 Total: -28.45 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.18 Total: -37.66 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.27 -10.32 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.449 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds