Wall clock time and date at job start Mon Mar 30 2020 20:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.47466 * 2 1 4 4 C 1.38235 * 120.00282 * 269.72898 * 3 2 1 5 5 C 1.38231 * 120.00276 * 179.76303 * 4 3 2 6 6 C 1.38234 * 119.99846 * 0.50808 * 5 4 3 7 7 C 1.50704 * 120.00467 * 179.72287 * 6 5 4 8 8 H 1.08992 * 109.47254 * 160.01618 * 7 6 5 9 9 C 1.52995 * 109.47009 * 280.02365 * 7 6 5 10 10 N 1.46905 * 109.46481 * 40.02185 * 7 6 5 11 11 C 1.46897 * 110.99739 * 155.00293 * 10 7 6 12 12 H 1.09009 * 109.47398 * 34.99607 * 11 10 7 13 13 C 1.52997 * 109.47240 * 274.99832 * 11 10 7 14 14 C 1.52996 * 109.47050 * 154.99658 * 11 10 7 15 15 C 1.52996 * 109.47447 * 294.99854 * 14 11 10 16 16 C 1.50699 * 109.47369 * 179.97438 * 15 14 11 17 17 H 1.08004 * 120.00233 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00087 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00085 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99791 * 180.02562 * 18 16 15 21 21 H 1.48489 * 109.47346 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47049 * 120.00203 * 20 18 16 23 23 H 1.48502 * 109.47111 * 239.99676 * 20 18 16 24 24 C 1.38241 * 119.99835 * 359.74567 * 6 5 4 25 25 C 1.38230 * 119.99983 * 0.02562 * 24 6 5 26 26 H 1.09002 * 109.47153 * 59.99773 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99964 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00227 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99856 * 2 1 3 31 31 H 1.08008 * 119.99550 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00386 * 180.23261 * 5 4 3 33 33 H 1.09006 * 109.47209 * 59.99522 * 9 7 6 34 34 H 1.09003 * 109.47145 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.47451 * 299.99539 * 9 7 6 36 36 H 1.00904 * 110.99622 * 278.95449 * 10 7 6 37 37 H 1.08998 * 109.47117 * 180.02562 * 13 11 10 38 38 H 1.08994 * 109.47253 * 300.00099 * 13 11 10 39 39 H 1.09002 * 109.47360 * 60.00039 * 13 11 10 40 40 H 1.09004 * 109.47452 * 55.00536 * 14 11 10 41 41 H 1.09005 * 109.47132 * 174.99987 * 14 11 10 42 42 H 1.08999 * 109.47054 * 300.00058 * 15 14 11 43 43 H 1.09000 * 109.47268 * 59.99755 * 15 14 11 44 44 H 0.96991 * 120.00239 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99721 * 179.97438 * 24 6 5 46 46 H 1.08007 * 119.99843 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2682 2.0706 -1.1971 5 6 2.7243 3.3754 -1.1971 6 6 2.9548 4.0270 0.0000 7 6 3.4581 5.4476 0.0001 8 1 3.2481 5.9074 0.9658 9 6 4.9674 5.4539 -0.2504 10 7 2.7824 6.2064 -1.0608 11 6 2.7641 7.6422 -0.7511 12 1 3.6848 7.9144 -0.2348 13 6 1.5649 7.9553 0.1460 14 6 2.6521 8.4428 -2.0500 15 6 3.9106 8.2265 -2.8927 16 6 3.8000 9.0146 -4.1724 17 1 2.9201 9.6105 -4.3653 18 6 4.8220 8.9748 -5.0971 19 7 5.8932 8.2488 -4.8625 20 14 4.6851 9.9523 -6.6831 21 1 3.3911 10.6802 -6.7057 22 1 5.8031 10.9264 -6.7623 23 1 4.7521 9.0266 -7.8423 24 6 2.7240 3.3755 1.1972 25 6 2.2633 2.0722 1.1971 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.0927 1.5598 -2.1325 32 1 2.9050 3.8844 -2.1324 33 1 5.1773 4.9940 -1.2161 34 1 5.3313 6.4813 -0.2507 35 1 5.4687 4.8908 0.5368 36 1 3.2122 6.0353 -1.9576 37 1 1.5511 9.0207 0.3754 38 1 0.6443 7.6832 -0.3701 39 1 1.6447 7.3849 1.0715 40 1 1.7784 8.1078 -2.6092 41 1 2.5492 9.5024 -1.8161 42 1 4.7842 8.5617 -2.3335 43 1 4.0136 7.1669 -3.1266 44 1 6.6120 8.2206 -5.5131 45 1 2.9044 3.8844 2.1325 46 1 2.0834 1.5630 2.1325 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172487054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:15 Heat of formation + Delta-G solvation = -26.004560 kcal Electronic energy + Delta-G solvation = -21130.484327 eV Core-core repulsion = 18210.716011 eV Total energy + Delta-G solvation = -2919.768316 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62556 -38.80564 -36.08551 -34.92085 -33.54780 -31.75798 -31.32750 -29.72528 -28.87058 -27.03114 -25.18300 -23.64300 -23.39266 -22.58000 -21.10349 -20.90919 -18.54456 -17.36407 -17.01030 -16.55312 -16.22338 -16.02114 -15.58647 -14.85711 -14.61208 -14.49047 -14.43692 -14.32834 -14.14053 -14.00273 -13.94517 -13.51276 -13.16008 -13.05352 -12.87640 -12.79054 -12.52857 -12.47518 -12.32831 -12.18525 -12.01543 -11.88050 -11.62562 -11.54695 -11.48882 -11.27594 -10.93457 -10.55404 -9.73228 -9.40827 -9.21210 -8.20713 -6.30915 0.51094 0.59804 1.38088 1.38846 1.51834 2.39951 2.88296 3.12290 3.31966 3.83368 3.93879 4.03363 4.08173 4.20555 4.24209 4.33589 4.38102 4.42224 4.47119 4.56438 4.63626 4.67674 4.76773 4.77485 4.81053 4.86173 5.01155 5.06369 5.09100 5.11140 5.11893 5.15577 5.23370 5.25132 5.30525 5.42000 5.44975 5.53246 5.62393 5.69705 5.80184 5.82513 5.84525 6.19989 6.25432 6.31579 6.44188 6.85632 7.38054 8.90551 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.020741 B = 0.003584 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.660736 B = 7811.073343 C = 8351.661457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.130 4.130 5 C -0.113 4.113 6 C -0.076 4.076 7 C 0.125 3.875 8 H 0.092 0.908 9 C -0.170 4.170 10 N -0.680 5.680 11 C 0.087 3.913 12 H 0.032 0.968 13 C -0.127 4.127 14 C -0.102 4.102 15 C 0.031 3.969 16 C -0.542 4.542 17 H 0.056 0.944 18 C 0.001 3.999 19 N -0.930 5.930 20 Si 0.961 3.039 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.278 1.278 24 C -0.120 4.120 25 C -0.122 4.122 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.338 0.662 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.057 0.943 42 H -0.015 1.015 43 H -0.002 1.002 44 H 0.262 0.738 45 H 0.136 0.864 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -14.113 13.887 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.094 4.094 4 C -0.148 4.148 5 C -0.131 4.131 6 C -0.076 4.076 7 C 0.016 3.984 8 H 0.110 0.890 9 C -0.228 4.228 10 N -0.313 5.313 11 C -0.022 4.022 12 H 0.050 0.950 13 C -0.185 4.185 14 C -0.140 4.140 15 C -0.007 4.007 16 C -0.580 4.580 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.570 5.570 20 Si 0.786 3.214 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.138 4.138 25 C -0.139 4.139 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.094 0.906 36 H 0.158 0.842 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.003 0.997 43 H 0.016 0.984 44 H 0.071 0.929 45 H 0.154 0.846 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -8.745 -14.251 14.062 21.847 hybrid contribution 1.419 0.948 -1.461 2.247 sum -7.326 -13.303 12.600 19.733 Atomic orbital electron populations 1.21731 0.94372 1.02320 1.01743 1.20560 0.96420 0.91371 1.03512 1.20147 0.99058 0.97327 0.92850 1.21178 1.00523 0.94609 0.98505 1.20970 0.99470 0.94889 0.97796 1.19813 0.99290 0.94887 0.93656 1.20472 0.90868 0.91009 0.96091 0.88964 1.22396 0.97058 1.01458 1.01934 1.60814 1.57994 1.07314 1.05147 1.21534 0.97611 0.87307 0.95772 0.94951 1.21712 0.97229 1.00937 0.98593 1.21644 0.98451 0.98917 0.94968 1.18967 0.92803 0.95114 0.93766 1.21718 1.03437 1.28560 1.04252 0.92535 1.25928 0.94994 0.96627 1.02087 1.70089 1.08184 1.41705 1.37029 0.85452 0.78394 0.78493 0.79040 1.18750 1.20430 1.20411 1.21183 0.99816 0.95418 0.97385 1.21218 0.99858 0.94620 0.98242 0.93556 0.92714 0.90995 0.89809 0.90796 0.85676 0.87799 0.93893 0.93560 0.90569 0.84197 0.91846 0.92705 0.92220 0.92924 0.92468 0.99710 0.98409 0.92891 0.84612 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.08 -1.26 6.07 29.85 0.18 -1.08 16 3 C -0.09 -2.00 5.13 -19.87 -0.10 -2.10 16 4 C -0.13 -3.28 9.70 22.27 0.22 -3.06 16 5 C -0.11 -3.31 9.32 22.27 0.21 -3.10 16 6 C -0.08 -2.10 4.96 -19.86 -0.10 -2.20 16 7 C 0.13 3.66 2.60 44.17 0.11 3.77 16 8 H 0.09 2.44 6.97 -2.39 -0.02 2.43 16 9 C -0.17 -5.18 9.12 71.98 0.66 -4.53 16 10 N -0.68 -23.19 5.51 -473.32 -2.61 -25.80 16 11 C 0.09 3.01 2.46 44.91 0.11 3.12 16 12 H 0.03 1.16 7.11 -2.38 -0.02 1.14 16 13 C -0.13 -3.56 9.40 71.98 0.68 -2.89 16 14 C -0.10 -4.25 4.74 30.59 0.15 -4.10 16 15 C 0.03 1.61 4.80 29.85 0.14 1.75 16 16 C -0.54 -31.10 9.11 25.60 0.23 -30.87 16 17 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 18 C 0.00 0.09 5.46 84.66 0.46 0.55 16 19 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 20 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C -0.12 -2.74 9.67 22.27 0.22 -2.53 16 25 C -0.12 -2.48 9.70 22.27 0.22 -2.26 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.08 1.05 8.09 -2.39 -0.02 1.03 16 30 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 31 H 0.13 2.81 8.06 -2.91 -0.02 2.78 16 32 H 0.10 3.36 7.25 -2.91 -0.02 3.34 16 33 H 0.04 1.45 8.13 -2.38 -0.02 1.43 16 34 H 0.05 1.54 7.43 -2.39 -0.02 1.52 16 35 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.34 13.25 5.56 -89.69 -0.50 12.75 16 37 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.06 1.49 7.43 -2.39 -0.02 1.47 16 40 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 42 H -0.02 -0.89 8.14 -2.39 -0.02 -0.90 16 43 H 0.00 -0.13 6.43 -2.39 -0.02 -0.14 16 44 H 0.26 15.01 8.31 -92.72 -0.77 14.24 16 45 H 0.14 2.51 8.04 -2.91 -0.02 2.49 16 46 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -63.58 367.75 4.21 -59.37 By element: Atomic # 1 Polarization: 26.39 SS G_CDS: 0.42 Total: 26.81 kcal Atomic # 6 Polarization: -54.97 SS G_CDS: 4.09 Total: -50.88 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -2.32 Total: -82.09 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -63.58 4.21 -59.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172487054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.368 kcal (2) G-P(sol) polarization free energy of solvation -63.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds