Wall clock time and date at job start Mon Mar 30 2020 20:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38263 * 119.99337 * 2 1 4 4 C 1.38216 * 119.99500 * 180.02562 * 3 2 1 5 5 C 1.38254 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99833 * 179.97438 * 5 4 3 7 7 C 1.38210 * 120.00162 * 0.26215 * 5 4 3 8 8 C 1.50702 * 120.00173 * 179.71884 * 7 5 4 9 9 H 1.09008 * 109.46973 * 39.99554 * 8 7 5 10 10 C 1.52998 * 109.47050 * 280.00231 * 8 7 5 11 11 N 1.46895 * 109.47425 * 159.99799 * 8 7 5 12 12 C 1.46896 * 111.00360 * 200.13559 * 11 8 7 13 13 H 1.09000 * 109.47089 * 14.31157 * 12 11 8 14 14 C 1.52998 * 109.47562 * 254.30882 * 12 11 8 15 15 C 1.53005 * 109.47284 * 134.30606 * 12 11 8 16 16 C 1.52997 * 109.47062 * 295.00332 * 15 12 11 17 17 C 1.50697 * 109.47145 * 180.02562 * 16 15 12 18 18 H 1.07998 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99959 * 180.02562 * 17 16 15 20 20 N 1.31522 * 119.99690 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00106 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47293 * 90.00727 * 21 19 17 23 23 H 1.48509 * 109.47222 * 210.00417 * 21 19 17 24 24 H 1.48496 * 109.47302 * 330.00501 * 21 19 17 25 25 C 1.38204 * 120.00437 * 180.02562 * 2 1 3 26 26 H 1.08994 * 109.46946 * 90.00034 * 1 2 3 27 27 H 1.09001 * 109.46323 * 209.99561 * 1 2 3 28 28 H 1.08998 * 109.47060 * 329.99189 * 1 2 3 29 29 H 1.07997 * 120.00061 * 0.02562 * 3 2 1 30 30 H 1.07998 * 119.99919 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47214 * 90.00132 * 6 5 4 32 32 H 1.09005 * 109.47266 * 330.00744 * 6 5 4 33 33 H 1.09000 * 109.47469 * 210.00840 * 6 5 4 34 34 H 1.09010 * 109.47207 * 174.31888 * 10 8 7 35 35 H 1.09002 * 109.46726 * 294.30716 * 10 8 7 36 36 H 1.09000 * 109.47592 * 54.31251 * 10 8 7 37 37 H 1.00905 * 110.99968 * 324.09279 * 11 8 7 38 38 H 1.08995 * 109.47107 * 64.92525 * 14 12 11 39 39 H 1.08997 * 109.47494 * 184.92864 * 14 12 11 40 40 H 1.09005 * 109.46622 * 304.93350 * 14 12 11 41 41 H 1.08999 * 109.46988 * 54.99959 * 15 12 11 42 42 H 1.08994 * 109.47066 * 175.00062 * 15 12 11 43 43 H 1.09005 * 109.46962 * 300.00127 * 16 15 12 44 44 H 1.09000 * 109.47458 * 59.99462 * 16 15 12 45 45 H 0.96997 * 119.99831 * 179.97438 * 20 19 17 46 46 H 1.08000 * 119.99747 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1975 0.0000 4 6 3.5804 1.1975 -0.0005 5 6 4.2717 0.0002 -0.0005 6 6 5.7787 0.0003 -0.0017 7 6 3.5807 -1.1967 -0.0055 8 6 4.3343 -2.5018 -0.0119 9 1 5.1983 -2.4258 0.6484 10 6 4.8053 -2.8118 -1.4342 11 7 3.4525 -3.5788 0.4576 12 6 4.2327 -4.7349 0.9184 13 1 5.2749 -4.4423 1.0460 14 6 4.1412 -5.8575 -0.1171 15 6 3.6741 -5.2273 2.2550 16 6 3.8791 -4.1495 3.3214 17 6 3.3294 -4.6346 4.6381 18 1 2.8785 -5.6136 4.7073 19 6 3.4012 -3.8283 5.7542 20 7 2.9219 -4.2519 6.9034 21 14 4.1803 -2.1348 5.6345 22 1 3.1398 -1.1347 5.2848 23 1 4.7913 -1.7776 6.9400 24 1 5.2294 -2.1458 4.5835 25 6 2.1982 -1.1968 -0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5140 29 1 1.6582 2.1327 0.0004 30 1 4.1203 2.1328 -0.0010 31 1 6.1428 0.0008 1.0256 32 1 6.1416 0.8902 -0.5161 33 1 6.1417 -0.8898 -0.5155 34 1 5.4350 -3.7015 -1.4226 35 1 3.9399 -2.9876 -2.0732 36 1 5.3764 -1.9673 -1.8200 37 1 2.8328 -3.2487 1.1823 38 1 4.6181 -5.5372 -1.0434 39 1 4.6465 -6.7451 0.2636 40 1 3.0937 -6.0900 -0.3093 41 1 2.6094 -5.4357 2.1492 42 1 4.1946 -6.1372 2.5533 43 1 4.9437 -3.9410 3.4273 44 1 3.3586 -3.2395 3.0231 45 1 2.9727 -3.6848 7.6886 46 1 1.6582 -2.1322 -0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488773.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:24 Heat of formation + Delta-G solvation = -20.415467 kcal Electronic energy + Delta-G solvation = -21972.040534 eV Core-core repulsion = 19052.514579 eV Total energy + Delta-G solvation = -2919.525955 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.93134 -38.72985 -35.92269 -34.91252 -33.96661 -31.92287 -30.42769 -30.29477 -29.37525 -27.01896 -25.78658 -24.40399 -23.08381 -22.24926 -21.18444 -20.60385 -18.97892 -17.29886 -16.94645 -16.47453 -16.17448 -16.02804 -15.57694 -15.17495 -14.92591 -14.69758 -14.54494 -14.17310 -14.01343 -13.73801 -13.61691 -13.42610 -13.33632 -13.26315 -12.99933 -12.93356 -12.76527 -12.47450 -12.36539 -12.25910 -11.98109 -11.92628 -11.81611 -11.60368 -11.46495 -11.35276 -11.09042 -10.81886 -9.65979 -9.40601 -9.21928 -8.34680 -6.37805 0.43306 0.51494 1.28258 1.28507 1.39897 2.28703 2.81672 3.00312 3.20509 3.71682 3.93362 4.00749 4.04149 4.18937 4.27251 4.33365 4.38364 4.41619 4.49923 4.57026 4.68478 4.71301 4.76752 4.80868 4.82097 4.83781 4.87394 4.94066 4.97433 5.00520 5.06279 5.13062 5.17432 5.25850 5.34797 5.40640 5.46155 5.47299 5.51993 5.57697 5.62096 5.72383 5.74125 6.16282 6.24414 6.27748 6.42000 6.70105 7.26531 8.82205 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.012409 B = 0.006412 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.825343 B = 4365.654625 C = 5272.387261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.130 4.130 4 C -0.124 4.124 5 C -0.103 4.103 6 C -0.119 4.119 7 C -0.095 4.095 8 C 0.124 3.876 9 H 0.041 0.959 10 C -0.126 4.126 11 N -0.679 5.679 12 C 0.087 3.913 13 H 0.048 0.952 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.005 4.005 17 C -0.529 4.529 18 H 0.034 0.966 19 C 0.009 3.991 20 N -0.948 5.948 21 Si 0.945 3.055 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.253 1.253 25 C -0.121 4.121 26 H 0.081 0.919 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.339 0.661 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.057 0.943 43 H 0.010 0.990 44 H 0.011 0.989 45 H 0.266 0.734 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.798 10.699 -19.815 22.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.147 4.147 4 C -0.142 4.142 5 C -0.103 4.103 6 C -0.176 4.176 7 C -0.095 4.095 8 C 0.014 3.986 9 H 0.059 0.941 10 C -0.184 4.184 11 N -0.312 5.312 12 C -0.023 4.023 13 H 0.066 0.934 14 C -0.185 4.185 15 C -0.146 4.146 16 C -0.043 4.043 17 C -0.567 4.567 18 H 0.052 0.948 19 C -0.188 4.188 20 N -0.589 5.589 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.177 1.177 25 C -0.140 4.140 26 H 0.100 0.900 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.159 0.841 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.029 0.971 45 H 0.075 0.925 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.678 10.467 -20.268 22.968 hybrid contribution 0.309 0.695 1.690 1.854 sum 2.987 11.163 -18.578 21.879 Atomic orbital electron populations 1.20803 0.89918 1.03117 1.02975 1.20236 0.97326 0.93126 0.99823 1.21296 0.94457 0.98028 1.00962 1.21261 0.94474 0.97841 1.00656 1.19995 0.97068 0.92611 1.00664 1.20931 0.90244 1.04003 1.02380 1.19943 0.94076 0.94518 1.00996 1.20515 0.93015 0.87283 0.97784 0.94149 1.21780 1.01125 1.01607 0.93841 1.60888 1.20592 1.07252 1.42469 1.21649 0.95418 0.91936 0.93264 0.93362 1.21756 1.02045 0.96559 0.98145 1.21730 1.00572 0.98619 0.93642 1.19482 0.95539 0.95507 0.93747 1.21478 1.38398 1.02488 0.94377 0.94759 1.25933 0.95584 1.02442 0.94860 1.70059 1.48295 1.39294 1.01207 0.85736 0.79699 0.79702 0.77985 1.19552 1.20631 1.17652 1.21088 0.93875 0.98357 1.00640 0.90039 0.91964 0.90623 0.84210 0.84081 0.91902 0.89665 0.90667 0.91835 0.92233 0.91319 0.84099 0.91686 0.92354 0.92682 0.92831 0.92379 0.97145 0.97123 0.92476 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 10.01 71.24 0.71 -1.54 16 2 C -0.11 -2.67 5.88 -19.86 -0.12 -2.78 16 3 C -0.13 -2.97 9.70 22.27 0.22 -2.76 16 4 C -0.12 -2.85 9.70 22.27 0.22 -2.64 16 5 C -0.10 -2.61 5.87 -19.87 -0.12 -2.72 16 6 C -0.12 -2.44 9.22 71.24 0.66 -1.79 16 7 C -0.09 -2.68 4.99 -19.87 -0.10 -2.78 16 8 C 0.12 3.41 2.04 44.17 0.09 3.50 16 9 H 0.04 1.21 6.66 -2.38 -0.02 1.19 16 10 C -0.13 -2.81 8.74 71.98 0.63 -2.18 16 11 N -0.68 -20.74 5.32 -473.31 -2.52 -23.26 16 12 C 0.09 2.72 2.45 44.92 0.11 2.83 16 13 H 0.05 1.52 7.25 -2.39 -0.02 1.51 16 14 C -0.13 -3.27 9.46 71.98 0.68 -2.59 16 15 C -0.11 -4.23 4.56 30.60 0.14 -4.09 16 16 C -0.01 -0.25 3.90 29.85 0.12 -0.14 16 17 C -0.53 -31.17 9.66 25.60 0.25 -30.93 16 18 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 19 C 0.01 0.53 5.47 84.65 0.46 0.99 16 20 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 21 Si 0.94 45.92 27.47 68.60 1.88 47.81 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 23 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.25 -11.57 6.54 99.48 0.65 -10.92 16 25 C -0.12 -3.47 8.56 22.27 0.19 -3.28 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 28 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 29 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 30 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.35 8.09 -2.38 -0.02 1.33 16 33 H 0.07 1.45 5.08 -2.39 -0.01 1.44 16 34 H 0.06 1.32 6.76 -2.38 -0.02 1.31 16 35 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.07 1.33 6.51 -2.39 -0.02 1.32 16 37 H 0.34 11.78 5.19 -89.69 -0.47 11.32 16 38 H 0.06 1.46 6.67 -2.39 -0.02 1.45 16 39 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.01 0.49 7.20 -2.38 -0.02 0.48 16 44 H 0.01 0.50 6.15 -2.39 -0.01 0.49 16 45 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 46 H 0.13 3.67 6.79 -2.91 -0.02 3.65 16 Total: -1.00 -66.72 355.63 4.22 -62.50 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.42 Total: 25.96 kcal Atomic # 6 Polarization: -57.02 SS G_CDS: 4.14 Total: -52.89 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.22 Total: -83.38 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.88 Total: 47.81 kcal Total: -66.72 4.22 -62.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488773.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.087 kcal (2) G-P(sol) polarization free energy of solvation -66.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds