Wall clock time and date at job start Mon Mar 30 2020 20:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46445 * 2 1 4 4 C 1.52994 * 109.47041 * 239.99836 * 2 1 3 5 5 C 1.53007 * 109.47196 * 174.99623 * 4 2 1 6 6 C 1.50697 * 109.47412 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99730 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99751 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00242 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99717 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47305 * 90.00397 * 10 8 6 12 12 H 1.48500 * 109.46946 * 210.00676 * 10 8 6 13 13 H 1.48499 * 109.47008 * 330.00238 * 10 8 6 14 14 N 1.46901 * 109.46970 * 119.99691 * 2 1 3 15 15 C 1.46896 * 110.99821 * 254.52629 * 14 2 1 16 16 C 1.52995 * 109.47515 * 54.92237 * 15 14 2 17 17 C 1.53008 * 109.47188 * 294.92455 * 15 14 2 18 18 C 1.52994 * 109.47190 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47658 * 59.99675 * 18 17 15 20 20 F 1.39892 * 109.47544 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.46843 * 60.00051 * 19 18 17 22 22 C 1.53000 * 109.46904 * 300.00307 * 19 18 17 23 23 C 1.52997 * 109.47318 * 59.99961 * 22 19 18 24 24 H 1.08998 * 109.47320 * 294.91981 * 1 2 3 25 25 H 1.08995 * 109.47127 * 54.92602 * 1 2 3 26 26 H 1.09005 * 109.46683 * 174.92368 * 1 2 3 27 27 H 1.08995 * 109.47348 * 294.99670 * 4 2 1 28 28 H 1.09003 * 109.47450 * 54.99713 * 4 2 1 29 29 H 1.09000 * 109.47093 * 300.00724 * 5 4 2 30 30 H 1.09003 * 109.46847 * 59.99721 * 5 4 2 31 31 H 0.96999 * 119.99616 * 179.97438 * 9 8 6 32 32 H 1.00904 * 110.99587 * 130.57523 * 14 2 1 33 33 H 1.09002 * 109.46859 * 54.56776 * 16 15 14 34 34 H 1.08997 * 109.47699 * 174.56377 * 16 15 14 35 35 H 1.09004 * 109.47105 * 294.56860 * 16 15 14 36 36 H 1.08998 * 109.46744 * 299.99828 * 17 15 14 37 37 H 1.08997 * 109.47358 * 59.99921 * 17 15 14 38 38 H 1.09001 * 109.47270 * 299.99489 * 18 17 15 39 39 H 1.08997 * 109.47119 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47396 * 299.99746 * 22 19 18 41 41 H 1.09001 * 109.46823 * 179.97438 * 22 19 18 42 42 H 1.09003 * 109.47616 * 180.02562 * 23 22 19 43 43 H 1.09000 * 109.47555 * 59.99458 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4185 -1.3603 -2.8155 9 7 6.2690 -0.7748 -2.0010 10 14 6.0412 -2.2410 -4.3407 11 1 6.0908 -1.2871 -5.4776 12 1 7.4027 -2.7749 -4.0827 13 1 5.1253 -3.3613 -4.6740 14 7 2.0197 -0.6924 1.1995 15 6 2.5401 0.2651 2.1845 16 6 1.4650 1.3067 2.5007 17 6 3.7751 0.9644 1.6128 18 6 4.3175 1.9612 2.6389 19 6 4.6999 1.2173 3.9200 20 9 5.1964 2.1287 4.8581 21 9 5.6829 0.2649 3.6304 22 6 3.4650 0.5180 4.4917 23 6 2.9226 -0.4789 3.4656 24 1 -0.3634 0.4330 0.9320 25 1 -0.3633 0.5905 -0.8410 26 1 -0.3633 -1.0237 -0.0909 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1370 29 1 3.8532 0.4370 -1.3573 30 1 3.9995 -1.0727 -0.4259 31 1 7.2196 -0.8006 -2.1920 32 1 2.7179 -1.3804 0.9601 33 1 0.5520 0.8020 2.8166 34 1 1.8150 1.9589 3.3008 35 1 1.2619 1.9012 1.6099 36 1 4.5411 0.2224 1.3876 37 1 3.5028 1.4941 0.6999 38 1 3.5517 2.7033 2.8645 39 1 5.1970 2.4597 2.2315 40 1 2.6991 1.2600 4.7173 41 1 3.7375 -0.0123 5.4041 42 1 2.0425 -0.9768 3.8726 43 1 3.6884 -1.2209 3.2399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172488997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:30 Heat of formation + Delta-G solvation = -132.106054 kcal Electronic energy + Delta-G solvation = -23265.275688 eV Core-core repulsion = 19786.676936 eV Total energy + Delta-G solvation = -3478.598752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.176 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.82693 -46.80472 -39.52400 -35.94081 -33.12595 -31.47177 -31.08759 -29.35773 -28.39830 -26.13304 -24.98758 -23.22558 -21.87639 -21.18792 -19.61690 -18.58420 -17.26883 -16.73052 -16.23799 -16.12422 -15.73660 -14.82923 -14.66973 -14.46018 -13.62241 -13.60427 -13.34054 -13.07099 -12.90942 -12.73755 -12.54805 -12.42306 -12.32980 -12.06739 -11.90466 -11.80697 -11.54117 -11.29856 -11.18049 -11.01610 -10.91506 -10.77283 -10.50084 -10.33785 -10.15169 -10.07401 -9.69513 -9.30143 -9.03753 -8.36699 -7.94211 -6.01884 -4.04161 3.30584 3.37443 3.40520 3.86049 4.14899 4.26476 4.44314 4.44704 4.72139 4.95191 5.06012 5.16495 5.27937 5.28572 5.34284 5.48815 5.52782 5.61116 5.74315 5.76222 5.83167 5.87520 5.92819 5.99622 6.04806 6.15332 6.20580 6.26015 6.35732 6.40607 6.52066 6.60937 6.62805 6.87620 7.06572 7.52069 7.60767 7.77689 7.88846 7.97609 8.40687 9.02216 9.60335 11.08786 Molecular weight = 275.18amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.005758 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.500011 B = 4861.702913 C = 6077.581254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.079 3.921 3 H 0.054 0.946 4 C -0.125 4.125 5 C 0.023 3.977 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.889 3.111 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 N -0.674 5.674 15 C 0.113 3.887 16 C -0.144 4.144 17 C -0.147 4.147 18 C -0.154 4.154 19 C 0.286 3.714 20 F -0.209 7.209 21 F -0.196 7.196 22 C -0.155 4.155 23 C -0.104 4.104 24 H 0.050 0.950 25 H 0.046 0.954 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.012 0.988 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.351 0.649 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 4.949 12.488 15.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.072 0.928 4 C -0.163 4.163 5 C -0.014 4.014 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.717 3.283 11 H -0.208 1.208 12 H -0.212 1.212 13 H -0.199 1.199 14 N -0.306 5.306 15 C 0.022 3.978 16 C -0.201 4.201 17 C -0.186 4.186 18 C -0.192 4.192 19 C 0.250 3.750 20 F -0.190 7.190 21 F -0.177 7.177 22 C -0.194 4.194 23 C -0.142 4.142 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.173 0.827 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.690 4.915 12.807 16.239 hybrid contribution 1.613 -0.150 -1.261 2.053 sum -7.077 4.765 11.546 14.357 Atomic orbital electron populations 1.21876 0.95898 1.01391 1.00287 1.21660 0.94399 0.97192 0.89818 0.92847 1.22026 0.99913 0.99309 0.95086 1.19149 0.88544 0.96799 0.96903 1.21236 0.91923 1.34410 1.08435 0.92811 1.25004 0.97098 0.95590 0.96602 1.69950 1.02364 1.43995 1.36858 0.86634 0.78173 0.79993 0.83450 1.20750 1.21249 1.19902 1.60811 1.41978 1.15281 1.12575 1.20913 0.92550 0.92070 0.92311 1.22073 0.98645 0.98063 1.01340 1.22385 0.98974 0.99212 0.98056 1.22504 1.03416 0.99459 0.93846 1.21184 0.84863 0.80618 0.88316 1.92974 1.89567 1.68489 1.67990 1.93021 1.65285 1.65411 1.93971 1.22553 0.95973 1.00584 1.00246 1.21479 1.01753 0.97270 0.93739 0.93134 0.93506 0.92851 0.92727 0.92840 0.96950 0.96621 0.93037 0.82745 0.91795 0.92579 0.92288 0.89695 0.89894 0.89141 0.89707 0.88726 0.89755 0.89946 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.28 37.16 0.34 -1.54 16 2 C 0.08 1.26 1.70 -67.71 -0.11 1.14 16 3 H 0.05 0.88 4.86 -51.93 -0.25 0.63 16 4 C -0.13 -2.46 4.57 -26.73 -0.12 -2.58 16 5 C 0.02 0.56 4.46 -27.88 -0.12 0.44 16 6 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 7 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 10 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 14 N -0.67 -10.28 5.93 -93.04 -0.55 -10.84 16 15 C 0.11 1.51 0.68 -131.60 -0.09 1.42 16 16 C -0.14 -1.63 6.51 37.16 0.24 -1.39 16 17 C -0.15 -2.26 4.12 -26.73 -0.11 -2.37 16 18 C -0.15 -2.04 5.18 -26.73 -0.14 -2.18 16 19 C 0.29 3.88 2.10 -26.73 -0.06 3.83 16 20 F -0.21 -2.95 17.06 2.25 0.04 -2.91 16 21 F -0.20 -3.23 16.02 2.25 0.04 -3.19 16 22 C -0.16 -1.70 5.18 -26.73 -0.14 -1.84 16 23 C -0.10 -1.27 4.91 -26.73 -0.13 -1.40 16 24 H 0.05 0.63 6.42 -51.93 -0.33 0.30 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.01 0.32 7.91 -51.93 -0.41 -0.09 16 30 H 0.02 0.40 6.29 -51.93 -0.33 0.07 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.35 6.11 6.64 -39.29 -0.26 5.85 16 33 H 0.06 0.70 7.52 -51.93 -0.39 0.31 16 34 H 0.06 0.54 4.83 -51.93 -0.25 0.29 16 35 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 36 H 0.08 1.59 7.40 -51.93 -0.38 1.20 16 37 H 0.08 1.38 6.19 -51.93 -0.32 1.06 16 38 H 0.09 1.00 6.56 -51.93 -0.34 0.66 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.09 0.87 6.31 -51.93 -0.33 0.54 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.01 7.80 -51.93 -0.41 0.60 16 LS Contribution 324.63 15.07 4.89 4.89 Total: -1.00 -28.86 324.63 -7.56 -36.42 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.84 Total: 4.31 kcal Atomic # 6 Polarization: -18.83 SS G_CDS: -0.85 Total: -19.68 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.18 Total: -36.39 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.07 Total: -6.10 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.86 -7.56 -36.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.690 kcal (2) G-P(sol) polarization free energy of solvation -28.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds