Wall clock time and date at job start Mon Mar 30 2020 20:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46445 * 2 1 4 4 C 1.52994 * 109.47041 * 239.99836 * 2 1 3 5 5 C 1.53007 * 109.47196 * 174.99623 * 4 2 1 6 6 C 1.50697 * 109.47412 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99730 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99751 * 179.97438 * 6 5 4 9 9 N 1.31515 * 120.00242 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99717 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47305 * 90.00397 * 10 8 6 12 12 H 1.48500 * 109.46946 * 210.00676 * 10 8 6 13 13 H 1.48499 * 109.47008 * 330.00238 * 10 8 6 14 14 N 1.46901 * 109.46970 * 119.99691 * 2 1 3 15 15 C 1.46896 * 110.99821 * 254.52629 * 14 2 1 16 16 C 1.52995 * 109.47515 * 54.92237 * 15 14 2 17 17 C 1.53008 * 109.47188 * 294.92455 * 15 14 2 18 18 C 1.52994 * 109.47190 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47658 * 59.99675 * 18 17 15 20 20 F 1.39892 * 109.47544 * 179.97438 * 19 18 17 21 21 F 1.39901 * 109.46843 * 60.00051 * 19 18 17 22 22 C 1.53000 * 109.46904 * 300.00307 * 19 18 17 23 23 C 1.52997 * 109.47318 * 59.99961 * 22 19 18 24 24 H 1.08998 * 109.47320 * 294.91981 * 1 2 3 25 25 H 1.08995 * 109.47127 * 54.92602 * 1 2 3 26 26 H 1.09005 * 109.46683 * 174.92368 * 1 2 3 27 27 H 1.08995 * 109.47348 * 294.99670 * 4 2 1 28 28 H 1.09003 * 109.47450 * 54.99713 * 4 2 1 29 29 H 1.09000 * 109.47093 * 300.00724 * 5 4 2 30 30 H 1.09003 * 109.46847 * 59.99721 * 5 4 2 31 31 H 0.96999 * 119.99616 * 179.97438 * 9 8 6 32 32 H 1.00904 * 110.99587 * 130.57523 * 14 2 1 33 33 H 1.09002 * 109.46859 * 54.56776 * 16 15 14 34 34 H 1.08997 * 109.47699 * 174.56377 * 16 15 14 35 35 H 1.09004 * 109.47105 * 294.56860 * 16 15 14 36 36 H 1.08998 * 109.46744 * 299.99828 * 17 15 14 37 37 H 1.08997 * 109.47358 * 59.99921 * 17 15 14 38 38 H 1.09001 * 109.47270 * 299.99489 * 18 17 15 39 39 H 1.08997 * 109.47119 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.47396 * 299.99746 * 22 19 18 41 41 H 1.09001 * 109.46823 * 179.97438 * 22 19 18 42 42 H 1.09003 * 109.47616 * 180.02562 * 23 22 19 43 43 H 1.09000 * 109.47555 * 59.99458 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6132 -1.3137 6 6 4.0673 -1.3242 -2.5438 7 1 3.3688 -1.8047 -3.2129 8 6 5.4185 -1.3603 -2.8155 9 7 6.2690 -0.7748 -2.0010 10 14 6.0412 -2.2410 -4.3407 11 1 6.0908 -1.2871 -5.4776 12 1 7.4027 -2.7749 -4.0827 13 1 5.1253 -3.3613 -4.6740 14 7 2.0197 -0.6924 1.1995 15 6 2.5401 0.2651 2.1845 16 6 1.4650 1.3067 2.5007 17 6 3.7751 0.9644 1.6128 18 6 4.3175 1.9612 2.6389 19 6 4.6999 1.2173 3.9200 20 9 5.1964 2.1287 4.8581 21 9 5.6829 0.2649 3.6304 22 6 3.4650 0.5180 4.4917 23 6 2.9226 -0.4789 3.4656 24 1 -0.3634 0.4330 0.9320 25 1 -0.3633 0.5905 -0.8410 26 1 -0.3633 -1.0237 -0.0909 27 1 1.7517 -1.7715 -1.2055 28 1 1.6054 -0.2618 -2.1370 29 1 3.8532 0.4370 -1.3573 30 1 3.9995 -1.0727 -0.4259 31 1 7.2196 -0.8006 -2.1920 32 1 2.7179 -1.3804 0.9601 33 1 0.5520 0.8020 2.8166 34 1 1.8150 1.9589 3.3008 35 1 1.2619 1.9012 1.6099 36 1 4.5411 0.2224 1.3876 37 1 3.5028 1.4941 0.6999 38 1 3.5517 2.7033 2.8645 39 1 5.1970 2.4597 2.2315 40 1 2.6991 1.2600 4.7173 41 1 3.7375 -0.0123 5.4041 42 1 2.0425 -0.9768 3.8726 43 1 3.6884 -1.2209 3.2399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488997.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:30 Heat of formation + Delta-G solvation = -148.502920 kcal Electronic energy + Delta-G solvation = -23265.986710 eV Core-core repulsion = 19786.676936 eV Total energy + Delta-G solvation = -3479.309774 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.176 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.97965 -47.97750 -40.68590 -37.30725 -35.09065 -32.91347 -32.15996 -30.97301 -29.47634 -27.24074 -26.85557 -24.32608 -23.37297 -22.60240 -20.99587 -19.72766 -18.52442 -18.38244 -17.73475 -17.23989 -16.94574 -16.52918 -16.11099 -15.73074 -14.89149 -14.79211 -14.67865 -14.47228 -14.31301 -14.20686 -13.76358 -13.67046 -13.53935 -13.29807 -13.13601 -13.07750 -12.89028 -12.80910 -12.61577 -12.39149 -12.36229 -12.06267 -11.98192 -11.70456 -11.60781 -11.33544 -11.25292 -11.07230 -10.88497 -10.53745 -9.21648 -8.20360 -6.30730 1.37255 1.37920 1.48937 2.39107 2.80052 3.07349 3.12463 3.16910 3.40155 3.58652 3.86842 3.96280 4.11267 4.16046 4.24189 4.28220 4.44588 4.48570 4.53371 4.65182 4.71801 4.78185 4.83235 4.89132 4.99637 5.02892 5.03362 5.08103 5.12917 5.18235 5.20846 5.27808 5.37169 5.48318 5.53999 5.62100 5.74217 5.85827 6.26318 6.33747 6.49426 6.86226 7.38360 8.89796 Molecular weight = 275.18amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.005758 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.500011 B = 4861.702913 C = 6077.581254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.049 0.951 4 C -0.115 4.115 5 C 0.035 3.965 6 C -0.544 4.544 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.927 5.927 10 Si 0.958 3.042 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.264 1.264 14 N -0.669 5.669 15 C 0.112 3.888 16 C -0.140 4.140 17 C -0.139 4.139 18 C -0.150 4.150 19 C 0.278 3.722 20 F -0.210 7.210 21 F -0.219 7.219 22 C -0.146 4.146 23 C -0.100 4.100 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.052 0.948 29 H -0.015 1.015 30 H -0.002 1.002 31 H 0.261 0.739 32 H 0.335 0.665 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 5.259 13.346 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.024 4.024 3 H 0.067 0.933 4 C -0.153 4.153 5 C -0.002 4.002 6 C -0.582 4.582 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.567 5.567 10 Si 0.783 3.217 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.189 1.189 14 N -0.300 5.300 15 C 0.021 3.979 16 C -0.197 4.197 17 C -0.178 4.178 18 C -0.189 4.189 19 C 0.242 3.758 20 F -0.191 7.191 21 F -0.201 7.201 22 C -0.184 4.184 23 C -0.138 4.138 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.003 0.997 30 H 0.016 0.984 31 H 0.069 0.931 32 H 0.154 0.846 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.141 0.859 39 H 0.089 0.911 40 H 0.143 0.857 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.721 5.232 13.668 18.141 hybrid contribution 2.289 -0.229 -1.540 2.769 sum -8.431 5.003 12.127 15.594 Atomic orbital electron populations 1.21795 0.93304 1.01720 1.01765 1.21583 0.96223 0.96232 0.88343 0.93336 1.21876 0.96389 0.99743 0.97290 1.18964 0.91841 0.94333 0.95073 1.21719 0.92413 1.34575 1.09503 0.92664 1.25891 0.97426 0.96361 0.99787 1.70092 1.02586 1.45318 1.38749 0.85557 0.77574 0.79037 0.79557 1.19917 1.20962 1.18851 1.60964 1.41303 1.15301 1.12408 1.21066 0.92286 0.92367 0.92178 1.22058 0.98120 0.97491 1.01992 1.22223 0.98901 0.98465 0.98213 1.22497 1.03746 0.99361 0.93270 1.21543 0.85317 0.80464 0.88482 1.92968 1.89721 1.68538 1.67878 1.92980 1.66520 1.66358 1.94203 1.22572 0.95019 1.00822 0.99954 1.21441 1.01845 0.97067 0.93434 0.91158 0.92638 0.92981 0.92986 0.92879 0.99693 0.98390 0.93051 0.84634 0.90488 0.90268 0.92719 0.94366 0.91840 0.85945 0.91107 0.85739 0.88276 0.87898 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.28 71.98 0.67 -2.56 16 2 C 0.09 2.70 1.70 44.91 0.08 2.78 16 3 H 0.05 1.59 4.86 -2.39 -0.01 1.58 16 4 C -0.11 -4.59 4.57 30.59 0.14 -4.45 16 5 C 0.03 1.78 4.46 29.85 0.13 1.92 16 6 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 7 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 8 C 0.00 0.20 5.46 84.65 0.46 0.66 16 9 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 10 Si 0.96 44.81 29.54 68.60 2.03 46.83 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 14 N -0.67 -20.27 5.93 -448.28 -2.66 -22.93 16 15 C 0.11 2.90 0.68 3.53 0.00 2.90 16 16 C -0.14 -2.70 6.51 71.98 0.47 -2.23 16 17 C -0.14 -4.42 4.12 30.60 0.13 -4.29 16 18 C -0.15 -3.96 5.18 30.59 0.16 -3.80 16 19 C 0.28 7.33 2.10 30.60 0.06 7.39 16 20 F -0.21 -5.61 17.06 44.97 0.77 -4.85 16 21 F -0.22 -7.49 16.02 44.97 0.72 -6.77 16 22 C -0.15 -2.82 5.18 30.59 0.16 -2.66 16 23 C -0.10 -2.28 4.91 30.60 0.15 -2.13 16 24 H 0.07 1.51 6.42 -2.39 -0.02 1.50 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 29 H -0.02 -0.85 7.91 -2.39 -0.02 -0.87 16 30 H 0.00 -0.12 6.29 -2.39 -0.01 -0.13 16 31 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 32 H 0.33 12.12 6.64 -89.69 -0.60 11.52 16 33 H 0.08 1.35 7.52 -2.39 -0.02 1.33 16 34 H 0.08 1.17 4.83 -2.39 -0.01 1.16 16 35 H 0.05 1.13 6.43 -2.38 -0.02 1.12 16 36 H 0.04 1.55 7.40 -2.39 -0.02 1.54 16 37 H 0.06 2.23 6.19 -2.39 -0.01 2.22 16 38 H 0.12 2.42 6.56 -2.39 -0.02 2.40 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.12 1.71 6.31 -2.39 -0.02 1.70 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.37 7.80 -2.39 -0.02 1.35 16 Total: -1.00 -64.59 324.63 4.39 -60.20 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.41 Total: 20.97 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 2.84 Total: -37.17 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -2.37 Total: -79.22 kcal Atomic # 9 Polarization: -13.10 SS G_CDS: 1.49 Total: -11.62 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -64.59 4.39 -60.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488997.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.299 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds