Wall clock time and date at job start Mon Mar 30 2020 20:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38255 * 120.00347 * 2 1 4 4 C 1.38212 * 120.00088 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00007 * 359.81328 * 4 3 2 6 6 C 1.38210 * 119.99671 * 0.42396 * 5 4 3 7 7 C 1.50699 * 119.99826 * 179.80716 * 6 5 4 8 8 C 1.52999 * 109.47178 * 269.72237 * 7 6 5 9 9 N 1.46897 * 109.47362 * 179.97438 * 8 7 6 10 10 C 1.46906 * 111.00175 * 293.95269 * 9 8 7 11 11 C 1.46898 * 111.00291 * 170.00307 * 9 8 7 12 12 H 1.09003 * 109.47218 * 58.68992 * 11 9 8 13 13 C 1.53007 * 109.47088 * 298.69017 * 11 9 8 14 14 C 1.53004 * 109.47425 * 178.69362 * 11 9 8 15 15 C 1.52997 * 109.46969 * 183.08671 * 14 11 9 16 16 C 1.50704 * 109.46963 * 174.72345 * 15 14 11 17 17 H 1.08003 * 120.00033 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00259 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99691 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00095 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47529 * 89.99751 * 20 18 16 22 22 H 1.48499 * 109.46928 * 209.99824 * 20 18 16 23 23 H 1.48503 * 109.46932 * 329.99633 * 20 18 16 24 24 C 1.38217 * 119.99476 * 179.97438 * 2 1 3 25 25 H 1.09007 * 109.46938 * 270.01841 * 1 2 3 26 26 H 1.08997 * 109.47091 * 30.01654 * 1 2 3 27 27 H 1.08997 * 109.47412 * 150.02280 * 1 2 3 28 28 H 1.08001 * 119.99647 * 0.02562 * 3 2 1 29 29 H 1.07998 * 119.99575 * 180.02562 * 4 3 2 30 30 H 1.08000 * 119.99959 * 180.23054 * 5 4 3 31 31 H 1.09000 * 109.47439 * 29.71878 * 7 6 5 32 32 H 1.09005 * 109.47639 * 149.72171 * 7 6 5 33 33 H 1.08994 * 109.47466 * 299.99867 * 8 7 6 34 34 H 1.09000 * 109.47061 * 59.99912 * 8 7 6 35 35 H 1.08999 * 109.46754 * 53.06504 * 10 9 8 36 36 H 1.08997 * 109.47176 * 173.05727 * 10 9 8 37 37 H 1.08995 * 109.47457 * 293.06634 * 10 9 8 38 38 H 1.08998 * 109.47307 * 300.00459 * 13 11 9 39 39 H 1.09003 * 109.46424 * 59.99905 * 13 11 9 40 40 H 1.08994 * 109.47311 * 179.97438 * 13 11 9 41 41 H 1.09001 * 109.47054 * 303.08409 * 14 11 9 42 42 H 1.08999 * 109.47333 * 63.08514 * 14 11 9 43 43 H 1.08998 * 109.47131 * 294.71925 * 15 14 11 44 44 H 1.08996 * 109.47310 * 54.72582 * 15 14 11 45 45 H 0.96996 * 119.99359 * 180.02562 * 19 18 16 46 46 H 1.07995 * 120.00491 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0002 0.0050 6 6 3.5806 -1.1970 0.0000 7 6 4.3340 -2.5022 0.0005 8 6 4.5885 -2.9446 -1.4419 9 7 5.3235 -4.2165 -1.4415 10 6 6.6723 -4.0450 -0.8854 11 6 5.3801 -4.7923 -2.7918 12 1 5.8645 -4.0872 -3.4674 13 6 3.9600 -5.0775 -3.2846 14 6 6.1794 -6.0965 -2.7570 15 6 6.3039 -6.6562 -4.1755 16 6 7.1986 -7.8688 -4.1603 17 1 7.6352 -8.2062 -3.2318 18 6 7.4609 -8.5469 -5.3318 19 7 6.9297 -8.1357 -6.4625 20 14 8.5693 -10.0503 -5.3128 21 1 7.7495 -11.2669 -5.0833 22 1 9.2707 -10.1646 -6.6167 23 1 9.5691 -9.9143 -4.2231 24 6 2.1980 -1.1971 0.0005 25 1 -0.3633 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3634 -0.8901 -0.5135 28 1 1.6583 2.1326 0.0004 29 1 4.1204 2.1325 0.0010 30 1 5.3517 -0.0002 0.0092 31 1 5.2866 -2.3717 0.5139 32 1 3.7451 -3.2616 0.5149 33 1 3.6360 -3.0752 -1.9554 34 1 5.1775 -2.1853 -1.9563 35 1 6.6042 -3.5686 0.0926 36 1 7.1495 -5.0195 -0.7823 37 1 7.2641 -3.4196 -1.5538 38 1 3.4756 -5.7824 -2.6090 39 1 3.3906 -4.1483 -3.3093 40 1 4.0019 -5.5042 -4.2866 41 1 7.1735 -5.9028 -2.3543 42 1 5.6659 -6.8206 -2.1245 43 1 5.3171 -6.9375 -4.5430 44 1 6.7324 -5.8967 -4.8294 45 1 7.1139 -8.6130 -7.2866 46 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172502259.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:50 Heat of formation + Delta-G solvation = 0.947339 kcal Electronic energy + Delta-G solvation = -20689.416756 eV Core-core repulsion = 17770.817162 eV Total energy + Delta-G solvation = -2918.599594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70695 -38.14440 -34.61177 -33.30200 -32.37621 -31.51059 -29.09354 -28.60803 -27.08883 -25.53316 -24.79335 -22.98387 -22.10930 -21.02628 -20.21414 -19.07751 -16.70657 -16.39912 -15.83127 -15.48388 -15.04128 -14.61288 -14.41570 -14.34355 -13.95867 -13.83451 -13.33477 -12.99105 -12.87547 -12.51587 -12.44958 -12.36470 -12.10604 -11.92786 -11.63888 -11.44703 -11.20322 -11.11744 -11.04245 -10.91493 -10.74244 -10.62659 -10.47198 -10.03417 -9.57071 -9.27999 -9.00208 -8.91557 -8.71025 -8.30498 -7.98930 -5.96929 -3.98594 1.19280 1.23722 3.33809 3.39832 3.43338 3.57275 4.16911 4.49113 4.60984 4.67297 4.80604 4.97388 5.06806 5.13047 5.27946 5.33865 5.36239 5.38794 5.41224 5.53133 5.56192 5.59088 5.61729 5.73280 5.86363 5.90425 5.94333 5.99969 6.03578 6.08858 6.24860 6.31244 6.39050 6.41591 6.45351 6.54241 6.68143 6.79810 6.80994 6.87681 7.16515 7.43764 7.50628 7.72571 7.88779 8.04045 8.47723 9.08682 9.65059 11.14489 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.038412 B = 0.002701 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.768750 B =10365.165898 C =10704.480394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.129 4.129 4 C -0.116 4.116 5 C -0.124 4.124 6 C -0.071 4.071 7 C -0.079 4.079 8 C 0.057 3.943 9 N -0.539 5.539 10 C 0.020 3.980 11 C 0.081 3.919 12 H 0.034 0.966 13 C -0.142 4.142 14 C -0.103 4.103 15 C 0.023 3.977 16 C -0.518 4.518 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.116 4.116 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.022 0.978 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.819 18.107 13.933 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.148 4.148 4 C -0.134 4.134 5 C -0.142 4.142 6 C -0.072 4.072 7 C -0.116 4.116 8 C -0.071 4.071 9 N -0.263 5.263 10 C -0.128 4.128 11 C -0.026 4.026 12 H 0.052 0.948 13 C -0.200 4.200 14 C -0.141 4.141 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.072 0.928 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.134 4.134 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.136 0.864 29 H 0.137 0.863 30 H 0.137 0.863 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.077 17.729 14.036 24.756 hybrid contribution 1.142 -0.177 -0.660 1.331 sum -8.934 17.551 13.376 23.807 Atomic orbital electron populations 1.20795 0.91298 1.02805 1.02235 1.19924 0.96022 0.93201 0.99504 1.20990 0.94281 0.97391 1.02089 1.21105 0.94309 0.97913 1.00044 1.21057 0.99807 0.92067 1.01249 1.19939 0.93747 0.95146 0.98326 1.20651 0.99953 0.93290 0.97718 1.22113 0.99247 0.90309 0.95416 1.62097 1.16186 1.24242 1.23799 1.22457 0.89706 1.01942 0.98728 1.21800 0.96990 0.97061 0.86763 0.94785 1.21896 0.95453 1.00550 1.02052 1.21756 0.97618 0.93652 1.01101 1.19127 0.97074 0.95355 0.89939 1.21270 1.28921 1.11714 0.93696 0.92772 1.25025 0.96238 0.97608 0.95660 1.69969 1.44675 1.40373 0.98594 0.86611 0.80848 0.83366 0.77280 1.20670 1.21286 1.19923 1.20983 0.93615 0.97631 1.01161 0.91264 0.91662 0.91425 0.86408 0.86260 0.86282 0.90996 0.90146 0.90319 0.95290 0.92043 0.90536 0.95983 0.92241 0.93917 0.91161 0.93197 0.92697 0.96203 0.96969 0.93078 0.85963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.09 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.12 -1.27 9.70 -39.58 -0.38 -1.65 16 6 C -0.07 -0.77 5.13 -104.62 -0.54 -1.31 16 7 C -0.08 -0.87 5.28 -27.88 -0.15 -1.02 16 8 C 0.06 0.75 4.77 -3.83 -0.02 0.73 16 9 N -0.54 -8.26 4.63 -234.88 -1.09 -9.35 16 10 C 0.02 0.28 8.83 60.07 0.53 0.81 16 11 C 0.08 1.46 2.17 -67.71 -0.15 1.31 16 12 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 13 C -0.14 -2.41 8.74 37.16 0.32 -2.08 16 14 C -0.10 -2.19 4.34 -26.73 -0.12 -2.30 16 15 C 0.02 0.59 4.55 -27.88 -0.13 0.46 16 16 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 17 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.22 13.29 55.43 0.74 -26.48 16 20 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.12 -1.20 9.36 -39.58 -0.37 -1.57 16 25 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 27 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 28 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.07 0.76 6.36 -51.93 -0.33 0.43 16 32 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 33 H 0.08 1.05 5.88 -51.93 -0.31 0.75 16 34 H 0.03 0.39 8.12 -51.93 -0.42 -0.03 16 35 H 0.06 0.73 6.18 -51.93 -0.32 0.41 16 36 H 0.08 1.15 6.33 -51.93 -0.33 0.82 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.04 0.63 6.23 -51.93 -0.32 0.31 16 40 H 0.07 1.30 6.63 -51.93 -0.34 0.96 16 41 H 0.05 1.04 6.22 -51.93 -0.32 0.72 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.02 0.54 6.78 -51.93 -0.35 0.19 16 44 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 361.98 15.07 5.45 5.45 Total: -1.00 -30.57 361.98 -10.43 -41.00 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.08 Total: -2.30 kcal Atomic # 6 Polarization: -22.78 SS G_CDS: -2.44 Total: -25.22 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.35 Total: -35.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.57 -10.43 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172502259.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.950 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds