Wall clock time and date at job start Mon Mar 30 2020 20:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38262 * 119.99467 * 2 1 4 4 C 1.38207 * 119.99412 * 180.27762 * 3 2 1 5 5 C 1.38260 * 120.00484 * 359.74693 * 4 3 2 6 6 C 1.50697 * 120.00493 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47183 * 270.02469 * 6 5 4 8 8 C 1.46899 * 110.99484 * 293.94716 * 7 6 5 9 9 C 1.46903 * 111.00141 * 169.99908 * 7 6 5 10 10 H 1.08995 * 109.47073 * 58.70141 * 9 7 6 11 11 C 1.52998 * 109.46823 * 298.70423 * 9 7 6 12 12 C 1.52994 * 109.46982 * 178.70521 * 9 7 6 13 13 C 1.53008 * 109.47100 * 183.08123 * 12 9 7 14 14 C 1.50698 * 109.47243 * 174.92465 * 13 12 9 15 15 H 1.08001 * 120.00044 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00002 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00211 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00107 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47418 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47220 * 120.00344 * 18 16 14 21 21 H 1.48505 * 109.47287 * 240.00179 * 18 16 14 22 22 C 1.38214 * 119.99564 * 359.97438 * 5 4 3 23 23 C 1.38210 * 120.00229 * 179.77234 * 2 1 3 24 24 C 1.50701 * 120.00198 * 359.97438 * 23 2 1 25 25 H 1.09000 * 109.46952 * 270.22347 * 1 2 3 26 26 H 1.08991 * 109.47730 * 30.23196 * 1 2 3 27 27 H 1.09007 * 109.47042 * 150.23410 * 1 2 3 28 28 H 1.07993 * 120.00034 * 359.97438 * 3 2 1 29 29 H 1.08006 * 119.99884 * 179.72819 * 4 3 2 30 30 H 1.09002 * 109.46799 * 30.02056 * 6 5 4 31 31 H 1.09000 * 109.47308 * 150.01903 * 6 5 4 32 32 H 1.09002 * 109.47291 * 53.40718 * 8 7 6 33 33 H 1.09008 * 109.46956 * 173.40346 * 8 7 6 34 34 H 1.09000 * 109.47721 * 293.40841 * 8 7 6 35 35 H 1.09001 * 109.47459 * 59.99933 * 11 9 7 36 36 H 1.08998 * 109.47320 * 180.02562 * 11 9 7 37 37 H 1.09001 * 109.47313 * 300.00077 * 11 9 7 38 38 H 1.09001 * 109.47206 * 303.07589 * 12 9 7 39 39 H 1.09001 * 109.47572 * 63.08296 * 12 9 7 40 40 H 1.09000 * 109.46899 * 294.92894 * 13 12 9 41 41 H 1.09003 * 109.46687 * 54.92397 * 13 12 9 42 42 H 0.97001 * 120.00137 * 180.02562 * 17 16 14 43 43 H 1.08007 * 119.99856 * 179.97438 * 22 5 4 44 44 H 1.09000 * 109.47214 * 269.73339 * 24 23 2 45 45 H 1.08999 * 109.47140 * 149.72870 * 24 23 2 46 46 H 1.09007 * 109.46811 * 29.73171 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 -0.0058 5 6 4.2717 0.0001 -0.0063 6 6 5.7787 0.0001 -0.0132 7 7 6.2620 -0.0024 -1.4004 8 6 5.9095 -1.2570 -2.0784 9 6 7.7106 0.2357 -1.4537 10 1 8.2268 -0.5359 -0.8825 11 6 8.0241 1.6086 -0.8555 12 6 8.1811 0.1939 -2.9088 13 6 9.7008 0.3653 -2.9586 14 6 10.1787 0.1999 -4.3782 15 1 9.4696 -0.0063 -5.1662 16 6 11.5212 0.3130 -4.6712 17 7 12.3848 0.5646 -3.7117 18 14 12.1138 0.1073 -6.4307 19 1 10.9530 -0.1682 -7.3150 20 1 12.7889 1.3533 -6.8745 21 1 13.0705 -1.0262 -6.5015 22 6 3.5807 -1.1968 -0.0005 23 6 2.1982 -1.1969 0.0048 24 6 1.4447 -2.5020 0.0105 25 1 -0.3633 0.0040 1.0277 26 1 -0.3634 0.8878 -0.5174 27 1 -0.3633 -0.8921 -0.5102 28 1 1.6582 2.1326 -0.0004 29 1 4.1203 2.1328 -0.0102 30 1 6.1443 0.8911 0.4973 31 1 6.1444 -0.8889 0.5006 32 1 4.8379 -1.4326 -1.9836 33 1 6.1742 -1.1867 -3.1335 34 1 6.4547 -2.0827 -1.6212 35 1 7.6888 1.6384 0.1812 36 1 9.0989 1.7855 -0.8954 37 1 7.5078 2.3802 -1.4266 38 1 7.9090 -0.7643 -3.3514 39 1 7.7061 1.0003 -3.4677 40 1 9.9662 1.3596 -2.5993 41 1 10.1721 -0.3873 -2.3265 42 1 13.3292 0.6445 -3.9179 43 1 4.1207 -2.1322 -0.0013 44 1 1.2676 -2.8148 1.0396 45 1 2.0316 -3.2626 -0.5045 46 1 0.4900 -2.3727 -0.4994 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:56 Heat of formation + Delta-G solvation = -11.418046 kcal Electronic energy + Delta-G solvation = -21032.111450 eV Core-core repulsion = 18112.975653 eV Total energy + Delta-G solvation = -2919.135798 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.79111 -39.20829 -35.97342 -34.67157 -33.43686 -32.74447 -30.72444 -29.56504 -28.13723 -27.03748 -26.17910 -24.78521 -23.05055 -22.86946 -20.81602 -20.59969 -18.56096 -17.06074 -16.87467 -16.63429 -16.23049 -16.06748 -15.94674 -15.42121 -14.97654 -14.77617 -14.31877 -14.11137 -13.92218 -13.65290 -13.55821 -13.54428 -13.31814 -13.12433 -12.91026 -12.80305 -12.64442 -12.60020 -12.41446 -12.33885 -12.27426 -11.80274 -11.70662 -11.57015 -11.45574 -11.25064 -10.99148 -10.53717 -9.61307 -9.36140 -9.17065 -8.20085 -6.30567 0.44083 0.53357 1.38961 1.39270 1.52789 2.40446 2.70410 3.12899 3.20986 3.83564 3.88199 4.03292 4.06265 4.11811 4.16253 4.26290 4.39948 4.47026 4.48265 4.54952 4.66960 4.73215 4.75119 4.78079 4.81615 4.89873 4.91118 4.95527 4.98703 5.00834 5.06540 5.07362 5.12805 5.23000 5.30139 5.38752 5.42764 5.52327 5.59140 5.76393 5.77932 5.80162 5.86438 6.11194 6.16693 6.21070 6.29947 6.86436 7.38319 8.91853 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.034348 B = 0.002986 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.998608 B = 9375.956958 C = 9649.425031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.099 4.099 3 C -0.126 4.126 4 C -0.114 4.114 5 C -0.085 4.085 6 C 0.089 3.911 7 N -0.534 5.534 8 C 0.022 3.978 9 C 0.089 3.911 10 H 0.026 0.974 11 C -0.136 4.136 12 C -0.089 4.089 13 C 0.030 3.970 14 C -0.542 4.542 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.963 3.037 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.122 4.122 23 C -0.099 4.099 24 C -0.115 4.115 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.137 0.863 29 H 0.124 0.876 30 H 0.090 0.910 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.001 0.999 41 H -0.014 1.014 42 H 0.263 0.737 43 H 0.120 0.880 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.187 -2.692 10.138 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.099 4.099 3 C -0.144 4.144 4 C -0.133 4.133 5 C -0.086 4.086 6 C -0.037 4.037 7 N -0.259 5.259 8 C -0.126 4.126 9 C -0.019 4.019 10 H 0.043 0.957 11 C -0.194 4.194 12 C -0.127 4.127 13 C -0.007 4.007 14 C -0.580 4.580 15 H 0.074 0.926 16 C -0.198 4.198 17 N -0.573 5.573 18 Si 0.788 3.212 19 H -0.187 1.187 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.140 4.140 23 C -0.099 4.099 24 C -0.171 4.171 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.154 0.846 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.019 0.981 41 H 0.005 0.995 42 H 0.072 0.928 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -24.237 -2.288 9.920 26.288 hybrid contribution 1.518 -0.656 -0.397 1.701 sum -22.718 -2.944 9.523 24.809 Atomic orbital electron populations 1.20885 0.89534 1.03590 1.03020 1.20100 0.97370 0.92427 1.00047 1.21254 0.93910 0.98419 1.00809 1.21134 0.94605 0.97695 0.99848 1.19737 0.94592 0.93761 1.00479 1.21133 0.91454 1.01812 0.89340 1.62074 1.13335 1.35058 1.15394 1.22465 1.01322 0.89447 0.99377 1.21583 0.86560 0.97233 0.96503 0.95651 1.21820 1.01032 0.95920 1.00594 1.21515 0.96200 1.00396 0.94546 1.18991 0.91484 0.95066 0.95200 1.21724 0.92945 1.48206 0.95100 0.92578 1.25957 0.97174 0.94850 1.01807 1.70100 1.02687 1.50323 1.34184 0.85424 0.78388 0.77900 0.79494 1.18746 1.20256 1.20307 1.21050 0.94123 0.97442 1.01417 1.20020 0.93389 0.96164 1.00323 1.20885 1.00331 0.92902 1.02978 0.90323 0.90997 0.90333 0.84557 0.85833 0.89176 0.94335 0.90302 0.91859 0.95927 0.91167 0.93283 0.92156 0.93244 0.93149 0.98096 0.99513 0.92784 0.86171 0.90378 0.91534 0.89987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 9.60 71.24 0.68 -0.70 16 2 C -0.10 -1.84 5.88 -19.86 -0.12 -1.95 16 3 C -0.13 -2.51 9.70 22.27 0.22 -2.29 16 4 C -0.11 -2.63 9.70 22.27 0.22 -2.41 16 5 C -0.09 -2.08 4.90 -19.87 -0.10 -2.17 16 6 C 0.09 2.35 4.95 85.56 0.42 2.77 16 7 N -0.53 -16.58 4.62 -901.62 -4.17 -20.75 16 8 C 0.02 0.64 8.71 127.69 1.11 1.76 16 9 C 0.09 3.22 2.17 44.91 0.10 3.31 16 10 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 11 C -0.14 -4.57 8.74 71.98 0.63 -3.94 16 12 C -0.09 -3.85 4.34 30.59 0.13 -3.72 16 13 C 0.03 1.62 4.55 29.85 0.14 1.76 16 14 C -0.54 -31.68 9.11 25.60 0.23 -31.45 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 17 N -0.93 -57.52 13.29 21.44 0.28 -57.24 16 18 Si 0.96 45.12 29.54 68.60 2.03 47.14 16 19 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C -0.12 -2.71 7.53 22.27 0.17 -2.54 16 23 C -0.10 -1.92 5.88 -19.87 -0.12 -2.04 16 24 C -0.11 -1.56 9.61 71.24 0.68 -0.88 16 25 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.07 0.77 8.09 -2.39 -0.02 0.75 16 27 H 0.08 0.80 5.94 -2.38 -0.01 0.78 16 28 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.12 2.68 8.06 -2.91 -0.02 2.66 16 30 H 0.09 2.25 5.82 -2.39 -0.01 2.24 16 31 H 0.04 0.99 8.06 -2.39 -0.02 0.98 16 32 H 0.08 2.08 5.70 -2.39 -0.01 2.07 16 33 H 0.06 2.01 6.31 -2.38 -0.02 1.99 16 34 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 1.94 6.23 -2.39 -0.01 1.93 16 36 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 2.12 6.21 -2.39 -0.01 2.11 16 39 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.00 0.04 6.77 -2.39 -0.02 0.02 16 41 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 42 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 43 H 0.12 2.50 7.94 -2.91 -0.02 2.48 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 0.88 8.09 -2.39 -0.02 0.86 16 46 H 0.08 0.89 5.94 -2.38 -0.01 0.88 16 Total: -1.00 -65.88 356.49 3.94 -61.94 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.93 Total: 12.95 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 4.86 Total: -44.05 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -3.88 Total: -77.99 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -65.88 3.94 -61.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.523 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds