Wall clock time and date at job start Mon Mar 30 2020 20:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47121 * 2 1 4 4 C 1.38238 * 120.00103 * 89.99981 * 3 2 1 5 5 C 1.38234 * 120.00129 * 180.02562 * 4 3 2 6 6 C 1.38239 * 119.99726 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00020 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47078 * 90.00245 * 7 6 5 9 9 H 1.08998 * 109.47423 * 55.00262 * 8 7 6 10 10 C 1.52997 * 109.47143 * 175.00411 * 8 7 6 11 11 N 1.46900 * 109.46922 * 294.99937 * 8 7 6 12 12 C 1.46904 * 110.99799 * 162.41515 * 11 8 7 13 13 H 1.08994 * 109.47523 * 16.10780 * 12 11 8 14 14 C 1.50706 * 109.47064 * 136.10785 * 12 11 8 15 15 H 1.07993 * 119.99939 * 5.44728 * 14 12 11 16 16 C 1.37882 * 119.99765 * 185.44450 * 14 12 11 17 17 N 1.31510 * 119.99662 * 192.50290 * 16 14 12 18 18 Si 1.86797 * 119.99772 * 12.50708 * 16 14 12 19 19 H 1.48504 * 109.47245 * 86.32750 * 18 16 14 20 20 H 1.48503 * 109.46985 * 206.31837 * 18 16 14 21 21 H 1.48490 * 109.47663 * 326.32412 * 18 16 14 22 22 C 1.52999 * 109.47156 * 256.10729 * 12 11 8 23 23 C 1.53002 * 109.47336 * 65.58741 * 22 12 11 24 24 C 1.38241 * 120.00101 * 0.25629 * 6 5 4 25 25 C 1.38233 * 119.99950 * 359.49131 * 24 6 5 26 26 H 1.09007 * 109.47384 * 300.00660 * 1 2 3 27 27 H 1.09000 * 109.46889 * 60.00268 * 1 2 3 28 28 H 1.08993 * 109.47425 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47062 * 239.99232 * 2 1 3 30 30 H 1.09001 * 109.46401 * 119.99535 * 2 1 3 31 31 H 1.08001 * 119.99881 * 359.97438 * 4 3 2 32 32 H 1.07996 * 120.00517 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47045 * 330.00097 * 7 6 5 34 34 H 1.09001 * 109.47280 * 210.00501 * 7 6 5 35 35 H 1.09003 * 109.47533 * 59.99484 * 10 8 7 36 36 H 1.09000 * 109.47021 * 179.97438 * 10 8 7 37 37 H 1.09005 * 109.47169 * 299.99530 * 10 8 7 38 38 H 1.00901 * 111.00039 * 38.46814 * 11 8 7 39 39 H 0.96998 * 119.99757 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.47466 * 185.58473 * 22 12 11 41 41 H 1.08996 * 109.47198 * 305.58840 * 22 12 11 42 42 H 1.08998 * 109.46851 * 60.09666 * 23 22 12 43 43 H 1.08998 * 109.47287 * 180.10053 * 23 22 12 44 44 H 1.09004 * 109.46619 * 300.09839 * 23 22 12 45 45 H 1.07996 * 119.99547 * 179.72324 * 24 6 5 46 46 H 1.07988 * 120.00135 * 180.22870 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1972 5 6 2.7230 3.3759 1.1972 6 6 2.9534 4.0275 0.0000 7 6 3.4546 5.4487 -0.0001 8 6 4.9846 5.4499 0.0005 9 1 5.3487 4.8606 -0.8411 10 6 5.4935 6.8873 -0.1252 11 7 5.4742 4.8652 1.2560 12 6 6.8826 4.4651 1.1363 13 1 7.3228 4.9424 0.2609 14 6 7.6328 4.8921 2.3717 15 1 7.0998 5.3294 3.2030 16 6 8.9996 4.7243 2.4407 17 7 9.6217 4.8618 3.5912 18 14 9.9676 4.3017 0.9000 19 1 10.3285 5.5515 0.1838 20 1 11.2051 3.5726 1.2774 21 1 9.1390 3.4451 0.0142 22 6 6.9701 2.9450 0.9865 23 6 6.3294 2.5254 -0.3381 24 6 2.7184 3.3775 -1.1972 25 6 2.2631 2.0723 -1.1972 26 1 -0.3634 0.5140 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 2.0823 1.5635 2.1325 32 1 2.9026 3.8852 2.1324 33 1 3.0905 5.9624 0.8896 34 1 3.0912 5.9622 -0.8903 35 1 5.1294 7.4766 0.7163 36 1 6.5835 6.8881 -0.1244 37 1 5.1303 7.3212 -1.0569 38 1 4.8998 4.0857 1.5400 39 1 10.5833 4.7442 3.6397 40 1 8.0160 2.6383 0.9973 41 1 6.4428 2.4676 1.8124 42 1 6.8577 3.0015 -1.1641 43 1 6.3901 1.4423 -0.4440 44 1 5.2839 2.8336 -0.3497 45 1 2.8942 3.8881 -2.1324 46 1 2.0831 1.5632 -2.1324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173237926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:07 Heat of formation + Delta-G solvation = 1.558854 kcal Electronic energy + Delta-G solvation = -22130.802876 eV Core-core repulsion = 19212.229799 eV Total energy + Delta-G solvation = -2918.573077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66993 -37.37314 -34.81244 -33.27212 -31.84467 -30.84895 -30.18484 -28.82809 -26.77168 -26.11582 -23.13868 -22.65292 -22.48864 -20.69740 -19.86895 -19.64022 -16.67135 -16.11599 -15.74421 -15.25591 -15.15324 -14.71072 -14.04885 -13.81642 -13.71668 -13.48591 -13.25431 -13.10134 -12.66715 -12.61058 -12.46764 -11.86773 -11.75061 -11.72399 -11.59536 -11.37889 -11.23455 -11.18476 -10.81013 -10.78868 -10.68036 -10.56440 -10.48014 -10.11103 -9.82246 -9.31278 -9.18480 -8.78850 -8.38741 -8.29317 -7.24471 -5.98791 -3.90985 1.44030 1.52136 3.31685 3.40313 3.42693 3.84141 4.48954 4.70298 4.79290 4.98447 5.01725 5.10738 5.15664 5.23306 5.28670 5.42432 5.48259 5.53704 5.59166 5.73407 5.76721 5.78418 5.88785 5.89534 5.94786 6.00177 6.02797 6.12344 6.18326 6.20530 6.25827 6.32504 6.53899 6.54083 6.60875 6.66398 6.69812 6.79514 6.85736 6.89625 7.00574 7.13730 7.27580 7.85885 8.05806 8.47577 8.81612 9.17803 9.67818 11.14987 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021658 B = 0.005005 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.496851 B = 5593.026728 C = 6087.392234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.084 4.084 3 C -0.091 4.091 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.079 4.079 7 C -0.083 4.083 8 C 0.087 3.913 9 H 0.034 0.966 10 C -0.137 4.137 11 N -0.669 5.669 12 C 0.193 3.807 13 H 0.022 0.978 14 C -0.493 4.493 15 H 0.079 0.921 16 C 0.070 3.930 17 N -0.899 5.899 18 Si 0.855 3.145 19 H -0.281 1.281 20 H -0.290 1.290 21 H -0.252 1.252 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.116 4.116 25 C -0.118 4.118 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.128 0.872 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.329 0.671 39 H 0.261 0.739 40 H 0.063 0.937 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.038 0.962 44 H 0.052 0.948 45 H 0.117 0.883 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.701 -6.081 -10.157 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.131 4.131 5 C -0.129 4.129 6 C -0.079 4.079 7 C -0.121 4.121 8 C -0.024 4.024 9 H 0.052 0.948 10 C -0.195 4.195 11 N -0.301 5.301 12 C 0.084 3.916 13 H 0.039 0.961 14 C -0.531 4.531 15 H 0.097 0.903 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.683 3.317 19 H -0.207 1.207 20 H -0.216 1.216 21 H -0.176 1.176 22 C -0.191 4.191 23 C -0.213 4.213 24 C -0.135 4.135 25 C -0.136 4.136 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.149 0.851 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.135 0.865 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -16.375 -5.477 -9.781 19.845 hybrid contribution 0.779 -1.076 -1.355 1.898 sum -15.597 -6.553 -11.136 20.254 Atomic orbital electron populations 1.21740 0.94975 1.01406 1.02127 1.20516 0.95941 0.93023 1.02681 1.19810 1.00012 0.96030 0.93290 1.21010 0.99817 0.94930 0.97374 1.21163 0.98783 0.94851 0.98068 1.19965 0.98198 0.96659 0.93041 1.20840 0.96096 0.92199 1.02931 1.21502 0.91778 0.96285 0.92815 0.94850 1.21780 1.01973 0.95657 1.00117 1.60782 1.04374 1.36479 1.28493 1.19549 0.85609 0.89185 0.97221 0.96064 1.21029 0.91411 1.39602 1.01049 0.90251 1.24904 0.97752 0.95209 0.95268 1.69944 1.09246 1.50816 1.23827 0.87404 0.79954 0.78963 0.85420 1.20694 1.21647 1.17615 1.22643 1.00846 1.00672 0.94922 1.21965 1.00690 0.99594 0.99062 1.20986 1.00062 0.94868 0.97536 1.20916 1.00562 0.94871 0.97241 0.92557 0.92724 0.92649 0.91337 0.91119 0.86308 0.85404 0.90166 0.91142 0.92076 0.92089 0.93900 0.85144 0.92916 0.91886 0.92718 0.94011 0.94329 0.92891 0.86515 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.16 0.37 -0.81 16 2 C -0.08 -0.79 6.06 -27.89 -0.17 -0.96 16 3 C -0.09 -1.07 5.13 -104.62 -0.54 -1.61 16 4 C -0.11 -1.42 9.70 -39.58 -0.38 -1.81 16 5 C -0.11 -1.51 8.00 -39.58 -0.32 -1.83 16 6 C -0.08 -1.07 3.79 -104.62 -0.40 -1.46 16 7 C -0.08 -1.14 5.01 -27.88 -0.14 -1.28 16 8 C 0.09 1.46 1.85 -67.71 -0.13 1.34 16 9 H 0.03 0.59 6.41 -51.93 -0.33 0.26 16 10 C -0.14 -2.29 9.31 37.16 0.35 -1.94 16 11 N -0.67 -13.51 5.85 -100.95 -0.59 -14.10 16 12 C 0.19 4.53 1.43 -68.86 -0.10 4.43 16 13 H 0.02 0.52 5.52 -51.93 -0.29 0.24 16 14 C -0.49 -13.92 9.29 -34.44 -0.32 -14.24 16 15 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 16 C 0.07 2.01 5.37 -17.82 -0.10 1.92 16 17 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 18 Si 0.85 21.36 25.83 -169.99 -4.39 16.96 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.25 -5.90 5.29 56.52 0.30 -5.60 16 22 C -0.15 -3.33 4.52 -26.73 -0.12 -3.45 16 23 C -0.16 -2.89 8.89 37.16 0.33 -2.56 16 24 C -0.12 -1.47 9.26 -39.58 -0.37 -1.83 16 25 C -0.12 -1.39 9.70 -39.58 -0.38 -1.78 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 30 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 31 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 32 H 0.13 1.75 7.69 -52.49 -0.40 1.34 16 33 H 0.08 1.11 8.09 -51.93 -0.42 0.69 16 34 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 1.16 7.22 -51.93 -0.37 0.78 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.33 6.30 4.87 -39.29 -0.19 6.11 16 39 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.06 1.48 4.67 -51.93 -0.24 1.23 16 41 H 0.05 1.20 8.03 -51.93 -0.42 0.78 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.93 4.98 -51.93 -0.26 0.67 16 45 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -30.30 351.63 -9.39 -39.70 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -8.08 Total: 7.02 kcal Atomic # 6 Polarization: -25.48 SS G_CDS: -2.41 Total: -27.89 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.18 Total: -41.09 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.39 Total: 16.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.30 -9.39 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173237926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.256 kcal (2) G-P(sol) polarization free energy of solvation -30.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds