Wall clock time and date at job start Mon Mar 30 2020 20:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00392 * 2 1 4 4 H 1.48496 * 109.47306 * 275.41019 * 3 2 1 5 5 H 1.48496 * 109.46922 * 35.41466 * 3 2 1 6 6 H 1.48505 * 109.47057 * 155.41372 * 3 2 1 7 7 C 1.39932 * 119.99316 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00497 * 341.73638 * 7 2 1 9 9 C 1.41426 * 119.99584 * 161.73643 * 7 2 1 10 10 C 1.40791 * 120.18590 * 330.17821 * 9 7 2 11 11 C 1.37687 * 119.98848 * 180.02562 * 10 9 7 12 12 C 1.38432 * 120.38249 * 0.02562 * 11 10 9 13 13 C 1.39700 * 120.37453 * 359.71892 * 12 11 10 14 14 C 1.48383 * 119.99831 * 180.30590 * 13 12 11 15 15 C 1.39313 * 120.12704 * 129.97784 * 14 13 12 16 16 C 1.38115 * 119.89318 * 179.81190 * 15 14 13 17 17 Cl 1.73599 * 119.92838 * 180.23269 * 16 15 14 18 18 C 1.38469 * 120.14356 * 0.43936 * 16 15 14 19 19 C 1.38236 * 120.25415 * 359.79385 * 18 16 15 20 20 C 1.38281 * 120.11329 * 359.97438 * 19 18 16 21 21 F 1.35095 * 120.07818 * 180.02562 * 20 19 18 22 22 C 1.38779 * 119.99916 * 0.55830 * 13 12 11 23 23 H 0.97001 * 119.99630 * 0.02562 * 1 2 3 24 24 H 1.07992 * 120.00769 * 0.04097 * 10 9 7 25 25 H 1.08002 * 119.80703 * 180.02562 * 11 10 9 26 26 H 1.07996 * 119.81252 * 179.97438 * 12 11 10 27 27 H 1.08007 * 120.05665 * 0.02562 * 15 14 13 28 28 H 1.07994 * 119.87259 * 179.76459 * 18 16 15 29 29 H 1.08001 * 119.94797 * 179.97438 * 19 18 16 30 30 H 1.07999 * 120.18827 * 179.72455 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3756 2.1124 -1.3938 5 1 1.5018 2.6168 0.8113 6 1 3.5925 1.4097 0.5825 7 6 2.0078 -1.2119 0.0005 8 1 1.5086 -2.1235 0.2940 9 6 3.3686 -1.2430 -0.3833 10 6 3.8625 -0.3112 -1.3160 11 6 5.1880 -0.3455 -1.6872 12 6 6.0416 -1.2930 -1.1487 13 6 5.5693 -2.2216 -0.2180 14 6 6.4931 -3.2293 0.3589 15 6 6.5548 -3.4125 1.7386 16 6 7.4136 -4.3545 2.2702 17 17 7.4867 -4.5877 3.9889 18 6 8.2195 -5.1103 1.4355 19 6 8.1667 -4.9301 0.0660 20 6 7.3072 -3.9933 -0.4779 21 9 7.2559 -3.8181 -1.8165 22 6 4.2349 -2.2050 0.1629 23 1 -0.4850 0.8401 -0.0004 24 1 3.2020 0.4305 -1.7400 25 1 5.5638 0.3710 -2.4026 26 1 7.0794 -1.3118 -1.4467 27 1 5.9295 -2.8212 2.3913 28 1 8.8922 -5.8430 1.8561 29 1 8.7978 -5.5220 -0.5804 30 1 3.8655 -2.9243 0.8788 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241330708.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:09 Heat of formation + Delta-G solvation = -18.413605 kcal Electronic energy + Delta-G solvation = -17817.139383 eV Core-core repulsion = 14709.731149 eV Total energy + Delta-G solvation = -3107.408234 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.67036 -39.21208 -37.64265 -36.38723 -33.81497 -32.19689 -30.56460 -30.13785 -28.47517 -25.27027 -23.41795 -22.59461 -20.76071 -20.52233 -17.88572 -17.16757 -16.38322 -16.16526 -15.75543 -15.43724 -14.65638 -14.35232 -13.87019 -13.74566 -13.31147 -13.19438 -12.84455 -12.74837 -12.36933 -12.05127 -11.64011 -11.47453 -11.19892 -11.07326 -10.78154 -10.73955 -10.38921 -9.93583 -9.70273 -9.30474 -9.03430 -8.54414 -7.78031 -7.53094 -6.99625 -4.55099 0.96418 1.09958 2.06169 2.48617 2.54519 3.07374 3.18055 3.27626 3.52279 3.93859 4.28956 4.42282 4.70969 4.79952 5.08442 5.23716 5.32346 5.68478 5.79764 5.95865 6.01204 6.13537 6.16440 6.25253 6.41178 6.60644 6.78351 6.82772 7.04430 7.29253 7.48095 7.60810 7.77413 7.97515 8.28735 8.55446 8.73420 10.02819 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021160 B = 0.005235 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.930505 B = 5347.743030 C = 6170.164046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.085 3.915 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.448 4.448 8 H 0.091 0.909 9 C 0.090 3.910 10 C -0.228 4.228 11 C -0.079 4.079 12 C -0.215 4.215 13 C -0.038 4.038 14 C -0.036 4.036 15 C -0.076 4.076 16 C -0.045 4.045 17 Cl -0.071 7.071 18 C -0.097 4.097 19 C -0.145 4.145 20 C 0.108 3.892 21 F -0.127 7.127 22 C -0.180 4.180 23 H 0.286 0.714 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.146 0.854 28 H 0.138 0.862 29 H 0.141 0.859 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.345 -6.048 3.015 14.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.134 4.134 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.167 1.167 7 C -0.476 4.476 8 H 0.109 0.891 9 C 0.087 3.913 10 C -0.247 4.247 11 C -0.097 4.097 12 C -0.234 4.234 13 C -0.038 4.038 14 C -0.037 4.037 15 C -0.094 4.094 16 C -0.072 4.072 17 Cl -0.042 7.042 18 C -0.115 4.115 19 C -0.164 4.164 20 C 0.089 3.911 21 F -0.105 7.105 22 C -0.200 4.200 23 H 0.096 0.904 24 H 0.120 0.880 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.163 0.837 28 H 0.156 0.844 29 H 0.159 0.841 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 13.053 -5.974 3.140 14.695 hybrid contribution 0.176 0.750 -0.149 0.784 sum 13.229 -5.225 2.991 14.534 Atomic orbital electron populations 1.69696 1.08089 1.30303 1.34982 1.26140 0.94708 1.01705 0.90867 0.86332 0.81344 0.79820 0.78884 1.19607 1.21740 1.16712 1.19469 0.93022 0.96205 1.38940 0.89064 1.17641 0.93030 0.90784 0.89815 1.21138 0.95610 1.04510 1.03441 1.20529 0.93707 0.97218 0.98276 1.20345 0.98403 1.00629 1.04046 1.18182 0.92677 0.94730 0.98194 1.19106 0.96120 0.96350 0.92132 1.21124 0.97510 0.96781 0.94003 1.20817 1.01102 1.00379 0.84884 1.98362 1.97804 1.96389 1.11676 1.20784 0.99165 0.99596 0.91987 1.20960 1.00492 0.99584 0.95345 1.17821 0.98021 0.97527 0.77737 1.91523 1.95216 1.94364 1.29443 1.21068 0.91390 1.03687 1.03820 0.90395 0.88036 0.88429 0.88661 0.83663 0.84388 0.84081 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.24 13.93 55.55 0.77 -20.46 16 2 C 0.08 2.19 5.40 -17.34 -0.09 2.10 16 3 Si 0.91 20.46 24.52 -169.99 -4.17 16.29 16 4 H -0.27 -5.89 6.71 56.52 0.38 -5.51 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 7 C -0.45 -11.91 9.57 -37.73 -0.36 -12.27 16 8 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 9 C 0.09 2.25 5.10 -106.86 -0.55 1.70 16 10 C -0.23 -5.41 7.17 -38.82 -0.28 -5.69 16 11 C -0.08 -1.70 10.01 -39.71 -0.40 -2.09 16 12 C -0.21 -4.47 8.87 -38.96 -0.35 -4.81 16 13 C -0.04 -0.78 5.31 -104.97 -0.56 -1.34 16 14 C -0.04 -0.62 5.47 -104.84 -0.57 -1.20 16 15 C -0.08 -1.16 9.28 -39.23 -0.36 -1.53 16 16 C -0.05 -0.59 6.31 -39.54 -0.25 -0.84 16 17 Cl -0.07 -0.85 28.95 -51.86 -1.50 -2.35 16 18 C -0.10 -1.11 9.82 -39.50 -0.39 -1.50 16 19 C -0.14 -1.77 10.01 -39.57 -0.40 -2.17 16 20 C 0.11 1.71 7.15 -39.08 -0.28 1.43 16 21 F -0.13 -2.16 15.87 2.25 0.04 -2.13 16 22 C -0.18 -4.10 9.25 -38.53 -0.36 -4.45 16 23 H 0.29 6.80 8.30 -40.82 -0.34 6.46 16 24 H 0.10 2.40 4.72 -52.49 -0.25 2.15 16 25 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 26 H 0.10 1.81 7.75 -52.49 -0.41 1.40 16 27 H 0.15 2.22 8.04 -52.48 -0.42 1.79 16 28 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.10 2.25 8.04 -52.49 -0.42 1.83 16 LS Contribution 281.75 15.07 4.25 4.25 Total: -1.00 -26.70 281.75 -8.16 -34.86 By element: Atomic # 1 Polarization: 4.57 SS G_CDS: -2.36 Total: 2.21 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -5.19 Total: -32.66 kcal Atomic # 7 Polarization: -21.24 SS G_CDS: 0.77 Total: -20.46 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.29 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.50 Total: -2.35 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -26.70 -8.16 -34.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241330708.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.449 kcal (2) G-P(sol) polarization free energy of solvation -26.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds