Wall clock time and date at job start Mon Mar 30 2020 20:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86797 * 120.00105 * 2 1 4 4 H 1.48511 * 109.46811 * 275.41840 * 3 2 1 5 5 H 1.48499 * 109.47216 * 35.41371 * 3 2 1 6 6 H 1.48494 * 109.47319 * 155.41966 * 3 2 1 7 7 C 1.40007 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00079 * 341.73106 * 7 2 1 9 9 C 1.41037 * 119.99518 * 161.72408 * 7 2 1 10 10 C 1.40967 * 120.10715 * 330.11642 * 9 7 2 11 11 C 1.36238 * 119.92620 * 179.97438 * 10 9 7 12 12 C 1.39932 * 120.14354 * 0.02562 * 11 10 9 13 13 C 1.47961 * 119.89935 * 179.97438 * 12 11 10 14 14 C 1.39638 * 120.13219 * 310.02024 * 13 12 11 15 15 C 1.37920 * 119.87546 * 179.97438 * 14 13 12 16 16 C 1.38392 * 120.16023 * 359.97375 * 15 14 13 17 17 C 1.38484 * 120.28212 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 119.94235 * 179.97438 * 17 16 15 19 19 C 1.38082 * 120.11500 * 359.74511 * 17 16 15 20 20 C 1.40150 * 120.20779 * 359.97348 * 12 11 10 21 21 F 1.35102 * 119.96206 * 180.02562 * 20 12 11 22 22 C 1.36480 * 120.07168 * 0.27793 * 20 12 11 23 23 H 0.97000 * 120.00302 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.03542 * 359.95033 * 10 9 7 25 25 H 1.07993 * 119.92777 * 179.97438 * 11 10 9 26 26 H 1.08001 * 120.06768 * 359.95745 * 14 13 12 27 27 H 1.08004 * 119.92100 * 180.02562 * 15 14 13 28 28 H 1.08005 * 119.86226 * 180.02562 * 16 15 14 29 29 H 1.08003 * 120.07497 * 180.27382 * 19 17 16 30 30 H 1.07998 * 120.07211 * 179.69965 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.3749 2.1124 -1.3939 5 1 1.5013 2.6169 0.8113 6 1 3.5920 1.4098 0.5824 7 6 2.0080 -1.2125 0.0005 8 1 1.5088 -2.1240 0.2941 9 6 3.3650 -1.2434 -0.3825 10 6 3.8571 -0.3105 -1.3177 11 6 5.1688 -0.3433 -1.6846 12 6 6.0283 -1.3014 -1.1357 13 6 7.4516 -1.3326 -1.5385 14 6 7.7976 -1.3244 -2.8913 15 6 9.1261 -1.3530 -3.2609 16 6 10.1160 -1.3892 -2.2944 17 6 9.7803 -1.3976 -0.9509 18 17 11.0292 -1.4438 0.2540 19 6 8.4541 -1.3644 -0.5680 20 6 5.5451 -2.2317 -0.2054 21 9 6.3794 -3.1543 0.3218 22 6 4.2316 -2.2099 0.1645 23 1 -0.4850 0.8400 -0.0004 24 1 3.1951 0.4292 -1.7430 25 1 5.5457 0.3711 -2.4014 26 1 7.0265 -1.2959 -3.6469 27 1 9.3945 -1.3462 -4.3070 28 1 11.1548 -1.4111 -2.5892 29 1 8.1931 -1.3665 0.4801 30 1 3.8582 -2.9299 0.8776 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242147475.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:13:44 Heat of formation + Delta-G solvation = -33.152445 kcal Electronic energy + Delta-G solvation = -17831.251579 eV Core-core repulsion = 14723.204221 eV Total energy + Delta-G solvation = -3108.047358 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.74540 -40.41508 -39.21304 -37.40410 -35.70940 -33.55060 -31.80786 -31.29207 -30.74575 -27.10414 -23.99138 -23.73494 -22.86496 -22.04229 -19.75735 -18.47086 -17.51337 -17.02048 -16.96482 -16.74287 -16.45780 -15.94029 -15.63444 -14.96535 -14.67999 -14.61021 -14.39292 -14.01354 -13.96278 -13.51295 -12.95435 -12.79507 -12.61493 -12.55063 -12.30513 -12.14790 -11.93516 -11.69004 -11.51003 -11.15695 -10.15137 -9.73641 -9.61556 -9.14376 -9.03717 -6.63637 0.00699 0.28893 0.65928 0.72301 1.15564 1.26464 1.41216 1.48888 2.07486 2.39176 2.75354 3.29662 3.56733 3.77321 3.96068 4.13869 4.20885 4.32774 4.44886 4.52150 4.72152 4.74360 4.79417 4.95862 5.11781 5.24419 5.36910 5.42731 5.48191 5.51538 5.74260 5.77933 5.92318 6.05876 6.22048 6.54195 6.64001 8.02812 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.028701 B = 0.004666 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.345253 B = 5999.020945 C = 6173.491509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.053 3.947 3 Si 0.963 3.037 4 H -0.245 1.245 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.465 4.465 8 H 0.064 0.936 9 C 0.103 3.897 10 C -0.253 4.253 11 C -0.025 4.025 12 C -0.222 4.222 13 C -0.011 4.011 14 C -0.117 4.117 15 C -0.095 4.095 16 C -0.122 4.122 17 C -0.038 4.038 18 Cl -0.076 7.076 19 C -0.124 4.124 20 C 0.142 3.858 21 F -0.154 7.154 22 C -0.266 4.266 23 H 0.301 0.699 24 H 0.114 0.886 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.168 0.832 28 H 0.156 0.844 29 H 0.113 0.887 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.813 2.223 -5.909 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.165 4.165 3 Si 0.785 3.215 4 H -0.170 1.170 5 H -0.201 1.201 6 H -0.177 1.177 7 C -0.493 4.493 8 H 0.082 0.918 9 C 0.100 3.900 10 C -0.272 4.272 11 C -0.043 4.043 12 C -0.224 4.224 13 C -0.012 4.012 14 C -0.135 4.135 15 C -0.113 4.113 16 C -0.141 4.141 17 C -0.065 4.065 18 Cl -0.047 7.047 19 C -0.143 4.143 20 C 0.123 3.877 21 F -0.133 7.133 22 C -0.286 4.286 23 H 0.112 0.888 24 H 0.132 0.868 25 H 0.160 0.840 26 H 0.159 0.841 27 H 0.185 0.815 28 H 0.173 0.827 29 H 0.131 0.869 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 15.642 2.255 -5.754 16.819 hybrid contribution -0.331 -0.011 0.864 0.925 sum 15.311 2.244 -4.890 16.229 Atomic orbital electron populations 1.69673 1.09308 1.32316 1.33683 1.26909 0.95348 1.04333 0.89907 0.85526 0.79625 0.76064 0.80332 1.16989 1.20069 1.17739 1.19541 0.94068 0.96137 1.39533 0.91788 1.17629 0.92244 0.90757 0.89369 1.20917 0.96836 1.05200 1.04285 1.20586 0.91734 0.95427 0.96544 1.18274 0.93777 1.03271 1.07058 1.18654 0.90734 0.98077 0.93709 1.21629 0.97797 0.99662 0.94436 1.21391 0.91125 0.97872 1.00888 1.21369 1.01742 1.01171 0.89772 1.20919 0.88689 1.05969 0.90902 1.98345 1.52573 1.96997 1.56795 1.21152 0.91187 1.02233 0.99700 1.17408 0.87488 0.88154 0.94668 1.91380 1.71843 1.64782 1.85318 1.20747 0.92213 1.07331 1.08298 0.88811 0.86820 0.84025 0.84130 0.81502 0.82659 0.86932 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.01 13.93 21.84 0.30 -41.70 16 2 C 0.05 2.65 5.40 85.28 0.46 3.11 16 3 Si 0.96 39.17 24.51 68.60 1.68 40.85 16 4 H -0.25 -9.11 6.71 99.48 0.67 -8.44 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.25 -10.76 6.87 99.48 0.68 -10.07 16 7 C -0.47 -24.62 9.55 23.39 0.22 -24.40 16 8 H 0.06 3.65 8.06 -2.92 -0.02 3.63 16 9 C 0.10 5.03 5.10 -21.28 -0.11 4.93 16 10 C -0.25 -11.02 7.10 22.47 0.16 -10.86 16 11 C -0.02 -0.95 9.43 22.21 0.21 -0.74 16 12 C -0.22 -8.67 5.50 -19.83 -0.11 -8.78 16 13 C -0.01 -0.38 5.30 -20.04 -0.11 -0.48 16 14 C -0.12 -3.06 9.50 22.53 0.21 -2.84 16 15 C -0.09 -1.92 10.03 22.23 0.22 -1.70 16 16 C -0.12 -2.63 9.82 22.37 0.22 -2.41 16 17 C -0.04 -1.03 6.31 22.29 0.14 -0.89 16 18 Cl -0.08 -1.87 28.95 -2.72 -0.08 -1.95 16 19 C -0.12 -4.00 8.64 22.55 0.19 -3.80 16 20 C 0.14 6.15 7.11 22.32 0.16 6.31 16 21 F -0.15 -6.47 15.88 44.97 0.71 -5.75 16 22 C -0.27 -12.47 9.70 22.50 0.22 -12.25 16 23 H 0.30 13.56 8.30 -92.71 -0.77 12.79 16 24 H 0.11 4.77 4.73 -2.91 -0.01 4.76 16 25 H 0.14 4.34 8.03 -2.91 -0.02 4.32 16 26 H 0.14 3.26 8.04 -2.91 -0.02 3.24 16 27 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 29 H 0.11 3.91 7.80 -2.91 -0.02 3.89 16 30 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 Total: -1.00 -55.36 281.58 5.83 -49.53 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 1.11 Total: 13.84 kcal Atomic # 6 Polarization: -56.91 SS G_CDS: 2.10 Total: -54.81 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.30 Total: -41.70 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.71 Total: -5.75 kcal Atomic # 14 Polarization: 39.17 SS G_CDS: 1.68 Total: 40.85 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.08 Total: -1.95 kcal Total: -55.36 5.83 -49.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242147475.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.375 kcal (2) G-P(sol) polarization free energy of solvation -55.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds