Wall clock time and date at job start Mon Mar 30 2020 20:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86793 * 120.00509 * 2 1 4 4 H 1.48498 * 109.47475 * 274.98554 * 3 2 1 5 5 H 1.48501 * 109.47222 * 34.98552 * 3 2 1 6 6 H 1.48503 * 109.47444 * 154.98693 * 3 2 1 7 7 C 1.40030 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00036 * 186.34902 * 7 2 1 9 9 C 1.41322 * 119.99778 * 6.34793 * 7 2 1 10 10 C 1.40589 * 119.78098 * 173.77867 * 9 7 2 11 11 C 1.38351 * 119.14788 * 179.97438 * 10 9 7 12 12 C 1.38641 * 118.67497 * 359.97438 * 11 10 9 13 13 C 1.39749 * 119.49695 * 359.97438 * 12 11 10 14 14 N 1.38826 * 119.58833 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99709 * 0.02562 * 14 13 12 16 16 C 1.53000 * 109.47056 * 179.97438 * 15 14 13 17 17 O 1.42901 * 109.47140 * 65.00441 * 16 15 14 18 18 C 1.42894 * 113.99982 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47723 * 59.99796 * 18 17 16 20 20 F 1.39902 * 109.47227 * 179.97438 * 18 17 16 21 21 F 1.39902 * 109.47012 * 299.99352 * 18 17 16 22 22 N 1.31986 * 120.83131 * 0.25870 * 13 12 11 23 23 H 0.97007 * 119.99466 * 359.97438 * 1 2 3 24 24 H 1.07998 * 120.42818 * 0.02562 * 10 9 7 25 25 H 1.07996 * 120.66313 * 179.97438 * 11 10 9 26 26 H 1.08008 * 120.25172 * 180.02562 * 12 11 10 27 27 H 0.97004 * 120.00235 * 180.02562 * 14 13 12 28 28 H 1.09001 * 109.46908 * 60.00416 * 15 14 13 29 29 H 1.09000 * 109.47674 * 299.99852 * 15 14 13 30 30 H 1.09000 * 109.47143 * 185.00331 * 16 15 14 31 31 H 1.09000 * 109.47472 * 305.00368 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.3837 2.1072 -1.3947 5 1 1.4957 2.6199 0.8028 6 1 3.5878 1.4118 0.5920 7 6 2.0075 -1.2127 -0.0005 8 1 3.0825 -1.2157 0.1029 9 6 1.3073 -2.4327 -0.1364 10 6 2.0212 -3.6367 -0.2682 11 6 1.3225 -4.8235 -0.3998 12 6 -0.0633 -4.7835 -0.3966 13 6 -0.7159 -3.5552 -0.2610 14 7 -2.1035 -3.5128 -0.2581 15 6 -2.8744 -4.7510 -0.3960 16 6 -4.3694 -4.4275 -0.3615 17 8 -4.7127 -3.6393 -1.5030 18 6 -6.0943 -3.2801 -1.5670 19 9 -6.4355 -2.5350 -0.4332 20 9 -6.3242 -2.5137 -2.7146 21 9 -6.8758 -4.4395 -1.6158 22 7 -0.0296 -2.4341 -0.1413 23 1 -0.4850 0.8402 0.0004 24 1 3.1012 -3.6352 -0.2658 25 1 1.8461 -5.7624 -0.5031 26 1 -0.6343 -5.6948 -0.4973 27 1 -2.5627 -2.6635 -0.1647 28 1 -2.6298 -5.4246 0.4252 29 1 -2.6276 -5.2290 -1.3440 30 1 -4.9422 -5.3547 -0.3746 31 1 -4.5999 -3.8709 0.5469 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168166364.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:08:44 Heat of formation + Delta-G solvation = -171.596623 kcal Electronic energy + Delta-G solvation = -20868.711352 eV Core-core repulsion = 16927.847755 eV Total energy + Delta-G solvation = -3940.863597 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.28018 -48.02001 -47.97381 -38.71746 -38.01349 -35.08156 -33.28175 -30.73254 -30.00240 -27.82889 -25.35214 -25.26999 -22.91673 -21.40842 -20.40460 -19.56704 -19.07721 -18.81105 -17.39311 -16.44165 -15.67446 -15.44025 -14.84328 -14.77590 -14.73922 -14.48073 -14.39255 -14.15424 -14.15055 -13.94328 -13.63278 -13.41600 -13.10828 -12.80112 -12.07868 -11.94785 -11.51764 -11.20283 -11.00277 -10.96567 -10.61590 -10.42976 -9.91887 -9.49536 -8.91933 -7.91726 -7.50907 -6.55056 -6.33158 -4.46906 1.79852 2.87879 2.97525 3.12630 3.16016 3.23251 3.30261 3.92129 3.97536 3.99902 4.10084 4.68115 4.83771 4.93370 5.02315 5.50676 5.79507 6.01270 6.14039 6.14865 6.54161 6.84068 6.87844 6.92202 7.25167 7.57948 7.79335 7.89886 8.16535 8.33998 8.64973 8.80313 9.10729 10.24411 10.40608 Molecular weight = 276.08amu Principal moments of inertia in cm(-1) A = 0.019241 B = 0.004551 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.898819 B = 6151.690147 C = 7353.256702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.084 0.916 9 C 0.292 3.708 10 C -0.315 4.315 11 C -0.032 4.032 12 C -0.369 4.369 13 C 0.411 3.589 14 N -0.738 5.738 15 C 0.148 3.852 16 C 0.044 3.956 17 O -0.363 6.363 18 C 0.593 3.407 19 F -0.176 7.176 20 F -0.143 7.143 21 F -0.180 7.180 22 N -0.531 5.531 23 H 0.270 0.730 24 H 0.095 0.905 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.399 0.601 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 -5.939 -0.796 13.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.336 5.336 2 C -0.154 4.154 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.467 4.467 8 H 0.102 0.898 9 C 0.165 3.835 10 C -0.338 4.338 11 C -0.056 4.056 12 C -0.395 4.395 13 C 0.171 3.829 14 N -0.377 5.377 15 C 0.022 3.978 16 C -0.031 4.031 17 O -0.286 6.286 18 C 0.501 3.499 19 F -0.159 7.159 20 F -0.125 7.125 21 F -0.163 7.163 22 N -0.253 5.253 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.108 0.892 27 H 0.234 0.766 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.226 -5.154 -0.862 13.295 hybrid contribution 0.259 0.188 -0.036 0.322 sum -11.966 -4.966 -0.897 12.987 Atomic orbital electron populations 1.70152 1.07173 1.27401 1.28917 1.26052 0.94845 1.00947 0.93557 0.86357 0.80569 0.81117 0.78986 1.19563 1.20246 1.18559 1.19595 0.94595 0.89544 1.42939 0.89832 1.18205 0.86810 0.91821 0.86629 1.21549 0.98463 0.93816 1.19954 1.20591 0.93436 0.96351 0.95221 1.20584 0.94656 0.95786 1.28500 1.18472 0.84024 0.90374 0.89995 1.44048 1.02972 1.07345 1.83320 1.21091 0.85586 0.88887 1.02212 1.23312 0.98328 0.94969 0.86476 1.88462 1.19566 1.72263 1.48345 1.19577 0.80704 0.75050 0.74521 1.93263 1.92597 1.77562 1.52434 1.93269 1.93866 1.75346 1.49985 1.93241 1.76349 1.50433 1.96227 1.68199 1.07929 1.24130 1.24994 0.91902 0.88670 0.88900 0.89218 0.76631 0.90214 0.91514 0.89738 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -19.18 11.49 55.55 0.64 -18.54 16 2 C 0.07 1.84 5.49 -17.34 -0.10 1.74 16 3 Si 0.91 18.86 29.56 -169.99 -5.03 13.84 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.43 -11.84 9.13 -37.74 -0.34 -12.19 16 8 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 9 C 0.29 8.18 6.54 -85.00 -0.56 7.62 16 10 C -0.31 -7.97 9.83 -38.65 -0.38 -8.35 16 11 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 12 C -0.37 -8.38 9.34 -38.87 -0.36 -8.75 16 13 C 0.41 9.98 7.65 -155.31 -1.19 8.79 16 14 N -0.74 -14.53 5.67 -60.40 -0.34 -14.88 16 15 C 0.15 2.10 5.27 -4.04 -0.02 2.08 16 16 C 0.04 0.50 5.79 37.16 0.22 0.71 16 17 O -0.36 -4.90 10.52 -35.23 -0.37 -5.27 16 18 C 0.59 7.10 3.75 101.05 0.38 7.48 16 19 F -0.18 -2.12 16.86 2.25 0.04 -2.08 16 20 F -0.14 -1.82 17.53 2.25 0.04 -1.78 16 21 F -0.18 -1.94 16.86 2.25 0.04 -1.91 16 22 N -0.53 -14.75 7.91 -10.33 -0.08 -14.83 16 23 H 0.27 6.58 8.29 -40.82 -0.34 6.25 16 24 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 25 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 26 H 0.09 1.76 6.68 -52.48 -0.35 1.41 16 27 H 0.40 8.04 8.59 -40.82 -0.35 7.69 16 28 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 29 H 0.07 0.97 7.92 -51.93 -0.41 0.55 16 30 H 0.08 0.70 7.73 -51.93 -0.40 0.30 16 31 H 0.08 0.85 7.73 -51.93 -0.40 0.45 16 LS Contribution 289.51 15.07 4.36 4.36 Total: -1.00 -30.07 289.51 -6.18 -36.25 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -2.72 Total: 6.81 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.75 Total: -1.98 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: 0.21 Total: -48.24 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.37 Total: -5.27 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.12 Total: -5.77 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.07 -6.18 -36.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168166364.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.349 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds