Wall clock time and date at job start Mon Mar 30 2020 20:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34743 * 116.99719 * 2 1 4 4 O 1.21490 * 120.00272 * 0.02562 * 3 2 1 5 5 C 1.47611 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.39858 * 119.97475 * 180.02562 * 5 3 2 7 7 C 1.36552 * 120.02518 * 180.02562 * 6 5 3 8 8 C 1.40085 * 119.97372 * 359.97438 * 7 6 5 9 9 C 1.47013 * 120.02268 * 179.97438 * 8 7 6 10 10 N 1.30389 * 119.99775 * 179.97438 * 9 8 7 11 11 N 1.40092 * 120.00322 * 179.97438 * 10 9 8 12 12 C 1.34771 * 120.00261 * 180.02562 * 11 10 9 13 13 O 1.21872 * 120.00084 * 359.97438 * 12 11 10 14 14 C 1.41262 * 120.00380 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99758 * 353.74308 * 14 12 11 16 16 C 1.40224 * 120.00108 * 173.74373 * 14 12 11 17 17 N 1.30586 * 120.00171 * 6.26498 * 16 14 12 18 18 Si 1.86803 * 120.00003 * 186.26315 * 16 14 12 19 19 H 1.48506 * 109.47013 * 94.98437 * 18 16 14 20 20 H 1.48489 * 109.47382 * 214.98521 * 18 16 14 21 21 H 1.48509 * 109.47105 * 334.98723 * 18 16 14 22 22 C 1.40083 * 119.94471 * 0.02562 * 8 7 6 23 23 C 1.36549 * 119.97285 * 0.02562 * 22 8 7 24 24 H 1.08994 * 109.46975 * 299.99540 * 1 2 3 25 25 H 1.08995 * 109.47138 * 60.00118 * 1 2 3 26 26 H 1.09003 * 109.46475 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.98274 * 0.02562 * 6 5 3 28 28 H 1.08001 * 120.00887 * 179.70203 * 7 6 5 29 29 H 1.08000 * 120.00538 * 359.97438 * 9 8 7 30 30 H 0.97003 * 119.99722 * 359.97438 * 11 10 9 31 31 H 0.96999 * 119.99780 * 180.02562 * 17 16 14 32 32 H 1.07999 * 120.01192 * 180.02562 * 22 8 7 33 33 H 1.08000 * 119.98791 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5377 1.2780 -0.0006 6 6 4.1720 2.5245 0.0000 7 6 5.5356 2.5973 -0.0011 8 6 6.2991 1.4228 -0.0022 9 6 7.7673 1.4999 -0.0039 10 7 8.4775 0.4065 -0.0044 11 7 9.8765 0.4798 -0.0066 12 6 10.6106 -0.6504 -0.0076 13 8 10.0574 -1.7363 -0.0062 14 6 12.0213 -0.5765 -0.0103 15 1 12.5116 0.3802 -0.1135 16 6 12.7849 -1.7452 0.1209 17 7 12.1981 -2.9118 0.1226 18 14 14.6416 -1.6334 0.2933 19 1 15.0074 -1.6561 1.7324 20 1 15.2731 -2.7869 -0.3962 21 1 15.1203 -0.3680 -0.3192 22 6 5.6626 0.1750 -0.0027 23 6 4.2989 0.1047 -0.0027 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 3.5830 3.4298 0.0012 28 1 6.0251 3.5600 -0.0055 29 1 8.2575 2.4622 -0.0047 30 1 10.3168 1.3442 -0.0081 31 1 12.7264 -3.7202 0.2138 32 1 6.2502 -0.7312 -0.0031 33 1 3.8079 -0.8572 -0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000366331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:44 Heat of formation + Delta-G solvation = -55.969204 kcal Electronic energy + Delta-G solvation = -19291.667420 eV Core-core repulsion = 15897.674545 eV Total energy + Delta-G solvation = -3393.992875 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.094 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62738 -38.95183 -37.69544 -36.54507 -35.34643 -32.83403 -32.16989 -31.22255 -29.84330 -27.94843 -26.67245 -24.59602 -22.56892 -21.75718 -20.58902 -19.75113 -18.15003 -17.68908 -17.21643 -16.47968 -16.26999 -15.74479 -15.32708 -14.68222 -14.34307 -14.11435 -13.71772 -13.56346 -13.42079 -13.38778 -12.76105 -12.66917 -12.35154 -11.97106 -11.48529 -11.44833 -11.06099 -11.00767 -10.98170 -10.73359 -10.63677 -10.42891 -9.68749 -9.24579 -9.08212 -8.95442 -7.87997 -7.47671 -6.48957 -5.02404 0.42648 1.45543 2.17031 2.55928 2.90861 3.02050 3.06600 3.11019 3.55096 3.94139 4.00801 4.36980 4.62297 4.79223 4.89115 4.93638 4.96243 5.00091 5.28063 5.34527 5.43156 5.64061 5.69185 5.84431 5.99685 6.13137 6.25470 6.30294 6.48720 6.69671 6.85885 7.14287 7.61255 7.69765 7.90680 8.49319 8.68802 9.15606 10.30596 10.52116 Molecular weight = 276.09amu Principal moments of inertia in cm(-1) A = 0.047372 B = 0.002729 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.926904 B =10257.056534 C =10828.125192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.512 3.488 4 O -0.514 6.514 5 C -0.145 4.145 6 C -0.052 4.052 7 C -0.125 4.125 8 C 0.028 3.972 9 C 0.000 4.000 10 N -0.173 5.173 11 N -0.582 5.582 12 C 0.555 3.445 13 O -0.550 6.550 14 C -0.536 4.536 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.744 5.744 18 Si 0.918 3.082 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.111 4.111 23 C -0.057 4.057 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.136 0.864 28 H 0.135 0.865 29 H 0.112 0.888 30 H 0.372 0.628 31 H 0.275 0.725 32 H 0.146 0.854 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.691 8.576 0.064 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.271 6.271 3 C 0.358 3.642 4 O -0.404 6.404 5 C -0.147 4.147 6 C -0.070 4.070 7 C -0.145 4.145 8 C 0.025 3.975 9 C -0.208 4.208 10 N 0.016 4.984 11 N -0.328 5.328 12 C 0.364 3.636 13 O -0.429 6.429 14 C -0.572 4.572 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.371 5.371 18 Si 0.742 3.258 19 H -0.194 1.194 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.131 4.131 23 C -0.075 4.075 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.120 0.880 27 H 0.154 0.846 28 H 0.153 0.847 29 H 0.129 0.871 30 H 0.207 0.793 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.092 6.805 0.068 16.556 hybrid contribution 1.107 1.493 0.093 1.861 sum -13.986 8.298 0.161 16.263 Atomic orbital electron populations 1.23264 0.76178 1.03727 1.02508 1.86576 1.23402 1.32791 1.84347 1.21304 0.89304 0.81262 0.72285 1.90811 1.66958 1.36053 1.46601 1.19117 0.88517 0.95224 1.11872 1.20798 0.94393 0.96446 0.95386 1.20897 0.93029 0.97956 1.02657 1.18854 0.90951 0.93337 0.94315 1.23941 0.92657 0.94880 1.09295 1.74672 0.94538 1.26910 1.02259 1.48230 0.98254 1.11100 1.75254 1.17008 0.86970 0.81206 0.78422 1.90703 1.72389 1.26197 1.53594 1.19864 0.89523 0.94976 1.52867 0.90902 1.25778 1.00891 0.94458 0.92496 1.69995 1.37337 0.98380 1.31377 0.86178 0.81516 0.78982 0.79136 1.19435 1.20068 1.18580 1.21331 0.94093 0.98546 0.99163 1.21158 0.93870 0.97780 0.94718 0.91903 0.91894 0.88000 0.84647 0.84732 0.87089 0.79263 0.91348 0.83645 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.57 101.05 1.07 1.36 16 2 O -0.35 -4.04 9.80 -40.61 -0.40 -4.44 16 3 C 0.51 6.66 7.89 34.56 0.27 6.93 16 4 O -0.51 -7.56 16.12 -19.26 -0.31 -7.87 16 5 C -0.14 -1.85 5.88 -104.86 -0.62 -2.47 16 6 C -0.05 -0.61 9.53 -39.58 -0.38 -0.99 16 7 C -0.12 -1.43 9.74 -39.50 -0.38 -1.82 16 8 C 0.03 0.40 5.88 -104.96 -0.62 -0.22 16 9 C 0.00 0.00 10.75 -14.61 -0.16 -0.16 16 10 N -0.17 -3.66 10.16 32.15 0.33 -3.34 16 11 N -0.58 -13.31 6.26 29.03 0.18 -13.13 16 12 C 0.56 15.64 7.67 -15.11 -0.12 15.52 16 13 O -0.55 -17.84 15.24 5.03 0.08 -17.76 16 14 C -0.54 -14.38 9.28 -37.69 -0.35 -14.73 16 15 H 0.07 1.74 7.86 -52.49 -0.41 1.33 16 16 C 0.09 2.31 5.49 -17.34 -0.10 2.22 16 17 N -0.74 -21.27 11.75 55.56 0.65 -20.62 16 18 Si 0.92 18.85 29.56 -169.99 -5.03 13.83 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.11 -1.64 9.52 -39.50 -0.38 -2.02 16 23 C -0.06 -0.73 9.55 -39.59 -0.38 -1.11 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.14 1.42 7.63 -52.48 -0.40 1.01 16 28 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.11 1.44 8.03 -52.49 -0.42 1.02 16 30 H 0.37 7.04 8.61 -182.60 -1.57 5.47 16 31 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 32 H 0.15 2.42 7.54 -52.49 -0.40 2.02 16 33 H 0.14 1.54 7.59 -52.49 -0.40 1.15 16 LS Contribution 309.99 15.07 4.67 4.67 Total: -1.00 -35.00 309.99 -6.38 -41.38 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.43 Total: 4.74 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.13 Total: 2.53 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.16 Total: -37.08 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.63 Total: -30.07 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.00 -6.38 -41.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000366331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.593 kcal (2) G-P(sol) polarization free energy of solvation -34.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds