Wall clock time and date at job start Mon Mar 30 2020 20:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34743 * 116.99719 * 2 1 4 4 O 1.21490 * 120.00272 * 0.02562 * 3 2 1 5 5 C 1.47611 * 120.00274 * 180.02562 * 3 2 1 6 6 C 1.39858 * 119.97475 * 180.02562 * 5 3 2 7 7 C 1.36552 * 120.02518 * 180.02562 * 6 5 3 8 8 C 1.40085 * 119.97372 * 359.97438 * 7 6 5 9 9 C 1.47013 * 120.02268 * 179.97438 * 8 7 6 10 10 N 1.30389 * 119.99775 * 179.97438 * 9 8 7 11 11 N 1.40092 * 120.00322 * 179.97438 * 10 9 8 12 12 C 1.34771 * 120.00261 * 180.02562 * 11 10 9 13 13 O 1.21872 * 120.00084 * 359.97438 * 12 11 10 14 14 C 1.41262 * 120.00380 * 179.97438 * 12 11 10 15 15 H 1.08000 * 119.99758 * 353.74308 * 14 12 11 16 16 C 1.40224 * 120.00108 * 173.74373 * 14 12 11 17 17 N 1.30586 * 120.00171 * 6.26498 * 16 14 12 18 18 Si 1.86803 * 120.00003 * 186.26315 * 16 14 12 19 19 H 1.48506 * 109.47013 * 94.98437 * 18 16 14 20 20 H 1.48489 * 109.47382 * 214.98521 * 18 16 14 21 21 H 1.48509 * 109.47105 * 334.98723 * 18 16 14 22 22 C 1.40083 * 119.94471 * 0.02562 * 8 7 6 23 23 C 1.36549 * 119.97285 * 0.02562 * 22 8 7 24 24 H 1.08994 * 109.46975 * 299.99540 * 1 2 3 25 25 H 1.08995 * 109.47138 * 60.00118 * 1 2 3 26 26 H 1.09003 * 109.46475 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.98274 * 0.02562 * 6 5 3 28 28 H 1.08001 * 120.00887 * 179.70203 * 7 6 5 29 29 H 1.08000 * 120.00538 * 359.97438 * 9 8 7 30 30 H 0.97003 * 119.99722 * 359.97438 * 11 10 9 31 31 H 0.96999 * 119.99780 * 180.02562 * 17 16 14 32 32 H 1.07999 * 120.01192 * 180.02562 * 22 8 7 33 33 H 1.08000 * 119.98791 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4020 2.2195 0.0005 5 6 3.5377 1.2780 -0.0006 6 6 4.1720 2.5245 0.0000 7 6 5.5356 2.5973 -0.0011 8 6 6.2991 1.4228 -0.0022 9 6 7.7673 1.4999 -0.0039 10 7 8.4775 0.4065 -0.0044 11 7 9.8765 0.4798 -0.0066 12 6 10.6106 -0.6504 -0.0076 13 8 10.0574 -1.7363 -0.0062 14 6 12.0213 -0.5765 -0.0103 15 1 12.5116 0.3802 -0.1135 16 6 12.7849 -1.7452 0.1209 17 7 12.1981 -2.9118 0.1226 18 14 14.6416 -1.6334 0.2933 19 1 15.0074 -1.6561 1.7324 20 1 15.2731 -2.7869 -0.3962 21 1 15.1203 -0.3680 -0.3192 22 6 5.6626 0.1750 -0.0027 23 6 4.2989 0.1047 -0.0027 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 3.5830 3.4298 0.0012 28 1 6.0251 3.5600 -0.0055 29 1 8.2575 2.4622 -0.0047 30 1 10.3168 1.3442 -0.0081 31 1 12.7264 -3.7202 0.2138 32 1 6.2502 -0.7312 -0.0031 33 1 3.8079 -0.8572 -0.0035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000366331.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:43 Heat of formation + Delta-G solvation = -80.536802 kcal Electronic energy + Delta-G solvation = -19292.732751 eV Core-core repulsion = 15897.674545 eV Total energy + Delta-G solvation = -3395.058206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.094 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62157 -40.07571 -39.50854 -37.54445 -36.98763 -34.76816 -33.66695 -32.28341 -31.30746 -28.97879 -28.31383 -25.80705 -23.63204 -23.04124 -22.03852 -21.23579 -19.56119 -19.04460 -18.24619 -17.72346 -17.65666 -17.39096 -16.60513 -15.82824 -15.63096 -15.44537 -15.25999 -14.69358 -14.61273 -14.53976 -14.33484 -13.91976 -13.36073 -13.12994 -13.04131 -12.94258 -12.71183 -12.63150 -12.11043 -12.00680 -11.82301 -11.68005 -11.06642 -11.02011 -10.45603 -10.09778 -10.01525 -9.07920 -8.44636 -7.09259 -0.69012 0.43375 1.00010 1.39985 1.41270 1.58690 1.68907 1.74958 2.00546 2.31692 2.42104 2.87000 3.60761 3.61790 3.71469 3.88962 3.96652 4.29635 4.30281 4.33205 4.34602 4.55967 4.70036 4.78502 4.89141 5.08884 5.18369 5.19968 5.26753 5.38852 5.52841 5.77889 5.79358 6.00646 6.62986 6.67744 6.87637 7.40399 8.39300 8.55796 Molecular weight = 276.09amu Principal moments of inertia in cm(-1) A = 0.047372 B = 0.002729 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.926904 B =10257.056534 C =10828.125192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.514 3.486 4 O -0.532 6.532 5 C -0.141 4.141 6 C -0.052 4.052 7 C -0.095 4.095 8 C -0.003 4.003 9 C 0.054 3.946 10 N -0.250 5.250 11 N -0.591 5.591 12 C 0.544 3.456 13 O -0.613 6.613 14 C -0.561 4.561 15 H 0.097 0.903 16 C 0.030 3.970 17 N -0.802 5.802 18 Si 1.009 2.991 19 H -0.261 1.261 20 H -0.270 1.270 21 H -0.243 1.243 22 C -0.121 4.121 23 C -0.058 4.058 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.131 0.869 27 H 0.156 0.844 28 H 0.175 0.825 29 H 0.151 0.849 30 H 0.387 0.613 31 H 0.282 0.718 32 H 0.116 0.884 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.057 11.281 0.152 18.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.361 3.639 4 O -0.423 6.423 5 C -0.144 4.144 6 C -0.070 4.070 7 C -0.115 4.115 8 C -0.006 4.006 9 C -0.155 4.155 10 N -0.058 5.058 11 N -0.336 5.336 12 C 0.353 3.647 13 O -0.498 6.498 14 C -0.597 4.597 15 H 0.116 0.884 16 C -0.189 4.189 17 N -0.429 5.429 18 Si 0.827 3.173 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.166 1.166 22 C -0.142 4.142 23 C -0.076 4.076 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.149 0.851 27 H 0.174 0.826 28 H 0.192 0.808 29 H 0.168 0.832 30 H 0.226 0.774 31 H 0.092 0.908 32 H 0.134 0.866 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.490 9.562 0.153 18.204 hybrid contribution 0.773 0.828 0.055 1.134 sum -14.717 10.389 0.208 18.016 Atomic orbital electron populations 1.23599 0.74148 1.05859 1.02813 1.86569 1.25428 1.31929 1.83772 1.21305 0.89303 0.81472 0.71848 1.90803 1.67317 1.36674 1.47556 1.19345 0.88765 0.95629 1.10619 1.21099 0.94673 0.96698 0.94499 1.21220 0.92693 0.98281 0.99327 1.18977 0.90161 0.94270 0.97157 1.24656 0.93353 0.95492 1.02025 1.74766 0.93511 1.29479 1.08005 1.47368 0.99313 1.10288 1.76675 1.17358 0.88025 0.81561 0.77753 1.90637 1.73798 1.28807 1.56567 1.20428 0.89694 0.96505 1.53070 0.88449 1.27152 1.07234 0.93507 0.90986 1.70163 1.40210 0.99724 1.32846 0.84838 0.73223 0.79729 0.79485 1.18523 1.19482 1.16634 1.21214 0.94777 0.98147 1.00025 1.21173 0.93046 0.98685 0.94684 0.91608 0.91595 0.85076 0.82619 0.80792 0.83176 0.77420 0.90784 0.86573 0.83480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.57 113.37 1.20 1.59 16 2 O -0.36 -7.61 9.80 -56.53 -0.55 -8.16 16 3 C 0.51 12.38 7.89 70.30 0.55 12.94 16 4 O -0.53 -14.51 16.12 19.87 0.32 -14.19 16 5 C -0.14 -3.32 5.88 -20.02 -0.12 -3.43 16 6 C -0.05 -1.03 9.53 22.27 0.21 -0.82 16 7 C -0.10 -1.81 9.74 22.32 0.22 -1.59 16 8 C 0.00 -0.09 5.88 -20.08 -0.12 -0.21 16 9 C 0.05 1.66 10.75 87.21 0.94 2.60 16 10 N -0.25 -10.91 10.16 -52.21 -0.53 -11.44 16 11 N -0.59 -27.82 6.26 -180.21 -1.13 -28.94 16 12 C 0.54 32.08 7.67 84.99 0.65 32.73 16 13 O -0.61 -42.42 15.24 -4.90 -0.07 -42.49 16 14 C -0.56 -30.81 9.28 23.50 0.22 -30.59 16 15 H 0.10 4.64 7.86 -2.91 -0.02 4.62 16 16 C 0.03 1.60 5.49 85.36 0.47 2.07 16 17 N -0.80 -47.88 11.75 21.87 0.26 -47.63 16 18 Si 1.01 38.65 29.56 68.60 2.03 40.68 16 19 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 21 H -0.24 -8.50 7.11 99.48 0.71 -7.79 16 22 C -0.12 -3.61 9.52 22.32 0.21 -3.40 16 23 C -0.06 -1.45 9.55 22.27 0.21 -1.24 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.16 2.59 7.63 -2.91 -0.02 2.56 16 28 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 29 H 0.15 3.34 8.03 -2.91 -0.02 3.32 16 30 H 0.39 14.75 8.61 -213.32 -1.84 12.91 16 31 H 0.28 15.02 8.29 -92.71 -0.77 14.25 16 32 H 0.12 4.18 7.54 -2.91 -0.02 4.16 16 33 H 0.15 3.29 7.59 -2.91 -0.02 3.27 16 Total: -1.00 -81.94 309.99 4.29 -77.65 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.68 Total: 23.87 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 4.65 Total: 10.65 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -1.40 Total: -88.01 kcal Atomic # 8 Polarization: -64.53 SS G_CDS: -0.31 Total: -64.84 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -81.94 4.29 -77.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000366331.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.884 kcal (2) G-P(sol) polarization free energy of solvation -81.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds