Wall clock time and date at job start Mon Mar 30 2020 20:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86795 * 120.00242 * 2 1 4 4 H 1.48507 * 109.47089 * 270.00288 * 3 2 1 5 5 H 1.48501 * 109.47088 * 29.99751 * 3 2 1 6 6 H 1.48500 * 109.47446 * 150.00079 * 3 2 1 7 7 C 1.37883 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99573 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00038 * 179.97438 * 7 2 1 10 10 C 1.53350 * 109.41102 * 300.12082 * 9 7 2 11 11 C 1.53190 * 109.15078 * 178.68116 * 10 9 7 12 12 N 1.46925 * 108.89380 * 54.58050 * 11 10 9 13 13 C 1.34772 * 120.63200 * 126.34008 * 12 11 10 14 14 O 1.21554 * 119.99868 * 354.17146 * 13 12 11 15 15 C 1.47859 * 119.99937 * 174.16976 * 13 12 11 16 16 C 1.39564 * 120.52616 * 139.00111 * 15 13 12 17 17 N 1.31661 * 120.68240 * 179.75186 * 16 15 13 18 18 C 1.31906 * 121.94499 * 0.54121 * 17 16 15 19 19 C 1.38804 * 120.99937 * 359.72254 * 18 17 16 20 20 O 1.35925 * 120.40675 * 180.02562 * 19 18 17 21 21 C 1.38883 * 119.19384 * 0.02562 * 19 18 17 22 22 C 1.46934 * 118.73654 * 306.32096 * 12 11 10 23 23 C 1.53045 * 109.45861 * 180.02562 * 9 7 2 24 24 H 0.97000 * 120.00010 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46032 * 60.03195 * 9 7 2 26 26 H 1.08997 * 109.68102 * 58.71635 * 10 9 7 27 27 H 1.08994 * 109.47167 * 298.52404 * 10 9 7 28 28 H 1.08997 * 109.58423 * 294.72149 * 11 10 9 29 29 H 1.09000 * 109.58593 * 174.43844 * 11 10 9 30 30 H 1.07998 * 119.66546 * 359.97438 * 16 15 13 31 31 H 1.07998 * 119.49857 * 179.70426 * 18 17 16 32 32 H 0.96697 * 113.99999 * 269.98661 * 20 19 18 33 33 H 1.08000 * 120.88244 * 179.97438 * 21 19 18 34 34 H 1.08993 * 109.58238 * 173.39586 * 22 12 11 35 35 H 1.09002 * 109.58570 * 293.67340 * 22 12 11 36 36 H 1.08995 * 109.49806 * 61.41995 * 23 9 7 37 37 H 1.09004 * 109.49739 * 301.32348 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1941 0.0000 10 6 4.0206 -0.4691 -1.2518 11 6 5.5521 -0.4437 -1.2298 12 7 6.0487 -1.8187 -1.0830 13 6 6.9423 -2.3231 -1.9567 14 8 7.2652 -1.6790 -2.9357 15 6 7.5301 -3.6598 -1.7243 16 6 7.7110 -4.5487 -2.7849 17 7 8.2386 -5.7379 -2.5823 18 6 8.6059 -6.1431 -1.3820 19 6 8.4551 -5.3220 -0.2730 20 8 8.8382 -5.7517 0.9583 21 6 7.9079 -4.0561 -0.4368 22 6 5.5528 -2.6334 0.0348 23 6 4.0213 -2.6371 0.0001 24 1 -0.4850 0.8400 0.0004 25 1 3.8749 -0.6801 0.8898 26 1 3.6400 0.5521 -1.2648 27 1 3.6782 -0.9969 -2.1418 28 1 5.8955 0.1604 -0.3900 29 1 5.9240 -0.0185 -2.1620 30 1 7.4187 -4.2569 -3.7828 31 1 9.0302 -7.1287 -1.2602 32 1 8.1415 -6.2073 1.4503 33 1 7.7778 -3.3950 0.4072 34 1 5.9230 -3.6537 -0.0643 35 1 5.8984 -2.2093 0.9776 36 1 3.6787 -3.1441 -0.9019 37 1 3.6391 -3.1579 0.8781 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000556965521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:53 Heat of formation + Delta-G solvation = -32.864238 kcal Electronic energy + Delta-G solvation = -21428.286429 eV Core-core repulsion = 18171.128554 eV Total energy + Delta-G solvation = -3257.157874 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.09337 -39.56004 -37.62013 -37.06859 -33.97434 -32.77033 -31.43696 -30.63334 -30.43679 -26.84811 -24.75586 -23.95794 -23.01422 -22.39921 -20.54960 -19.30958 -18.23636 -17.40917 -17.26773 -16.78014 -16.66833 -15.97350 -15.27606 -15.01587 -14.54791 -13.89695 -13.76383 -13.62914 -13.50465 -13.23091 -12.99191 -12.66463 -12.54484 -12.26511 -12.00483 -11.73762 -11.09544 -10.87805 -10.35505 -10.33021 -10.22183 -9.93605 -9.83113 -9.65396 -9.32029 -9.24392 -9.15375 -8.61890 -8.35863 -6.15427 -4.15465 0.43591 0.75906 2.62330 2.98913 3.20473 3.29270 3.33495 3.44846 3.64425 4.16879 4.32506 4.38722 4.43827 4.54050 4.98494 5.09565 5.14520 5.15993 5.43231 5.54524 5.61097 5.65103 5.69362 5.72278 5.89702 6.07851 6.12130 6.14241 6.43472 6.54775 6.68615 6.76183 7.05418 7.12129 7.37290 7.47417 7.57389 7.66106 8.13696 8.42240 8.87845 9.46449 10.97800 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.029161 B = 0.004677 C = 0.004399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.953517 B = 5985.817004 C = 6362.954257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.277 1.277 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.135 4.135 11 C 0.107 3.893 12 N -0.592 5.592 13 C 0.560 3.440 14 O -0.538 6.538 15 C -0.155 4.155 16 C 0.143 3.857 17 N -0.468 5.468 18 C 0.094 3.906 19 C 0.050 3.950 20 O -0.489 6.489 21 C -0.071 4.071 22 C 0.095 3.905 23 C -0.114 4.114 24 H 0.264 0.736 25 H 0.029 0.971 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.395 0.605 33 H 0.150 0.850 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.605 -9.798 1.474 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.132 4.132 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.190 1.190 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.004 4.004 10 C -0.173 4.173 11 C -0.015 4.015 12 N -0.324 5.324 13 C 0.346 3.654 14 O -0.416 6.416 15 C -0.160 4.160 16 C -0.015 4.015 17 N -0.177 5.177 18 C -0.064 4.064 19 C 0.003 3.997 20 O -0.298 6.298 21 C -0.098 4.098 22 C -0.028 4.028 23 C -0.152 4.152 24 H 0.074 0.926 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.186 0.814 31 H 0.182 0.818 32 H 0.252 0.748 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.246 -9.642 0.134 18.892 hybrid contribution -0.306 1.337 0.982 1.687 sum 15.941 -8.305 1.117 18.009 Atomic orbital electron populations 1.69888 1.06324 1.27045 1.50450 1.25031 0.94693 0.99075 0.94374 0.86885 0.79930 0.83658 0.77994 1.20420 1.22402 1.19022 1.21005 0.88610 0.94506 1.51240 0.90837 1.19191 0.96966 0.91344 0.92909 1.22437 0.91499 1.01246 1.02135 1.21839 0.96489 0.80824 1.02304 1.48059 1.41429 1.15001 1.27907 1.18049 0.79497 0.85068 0.82744 1.90782 1.61962 1.60695 1.28166 1.20993 1.03586 0.96844 0.94580 1.22968 0.91875 0.87666 0.99001 1.67796 1.10257 1.16274 1.23393 1.23354 0.95595 0.99938 0.87498 1.19363 0.99875 0.93486 0.86963 1.84863 1.41058 1.77741 1.26183 1.22273 0.93879 0.96343 0.97280 1.22255 0.97339 0.94564 0.88602 1.21839 0.91108 1.00088 1.02132 0.92571 0.95329 0.92226 0.91536 0.91745 0.89622 0.81365 0.81817 0.74843 0.83233 0.90463 0.91300 0.92076 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.07 1.94 5.45 -17.82 -0.10 1.85 16 3 Si 0.89 21.02 24.38 -169.99 -4.14 16.87 16 4 H -0.28 -6.46 6.85 56.52 0.39 -6.07 16 5 H -0.30 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.27 -5.90 6.53 56.52 0.37 -5.53 16 7 C -0.52 -13.69 9.14 -34.44 -0.31 -14.00 16 8 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 9 C 0.01 0.32 1.66 -91.57 -0.15 0.17 16 10 C -0.14 -2.76 4.86 -26.45 -0.13 -2.89 16 11 C 0.11 1.86 6.43 -3.71 -0.02 1.83 16 12 N -0.59 -9.35 2.97 -173.88 -0.52 -9.87 16 13 C 0.56 8.89 7.33 -12.33 -0.09 8.80 16 14 O -0.54 -10.14 16.37 5.32 0.09 -10.05 16 15 C -0.15 -2.00 5.11 -104.84 -0.54 -2.54 16 16 C 0.14 1.78 10.82 -17.13 -0.19 1.60 16 17 N -0.47 -5.54 10.34 -12.80 -0.13 -5.67 16 18 C 0.09 0.91 11.13 -17.31 -0.19 0.72 16 19 C 0.05 0.47 6.73 -39.13 -0.26 0.21 16 20 O -0.49 -3.72 13.52 -19.50 -0.26 -3.98 16 21 C -0.07 -0.76 7.47 -38.72 -0.29 -1.05 16 22 C 0.09 1.30 4.94 -3.71 -0.02 1.28 16 23 C -0.11 -1.97 5.30 -26.61 -0.14 -2.11 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 26 H 0.06 1.30 3.26 -51.93 -0.17 1.13 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 29 H 0.09 1.50 7.00 -51.93 -0.36 1.14 16 30 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 31 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.39 1.12 9.06 45.56 0.41 1.53 16 33 H 0.15 1.44 6.71 -52.49 -0.35 1.09 16 34 H 0.08 0.88 4.77 -51.93 -0.25 0.64 16 35 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 299.51 15.07 4.51 4.51 Total: -1.00 -32.61 299.51 -5.77 -38.38 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.65 Total: 1.95 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.43 Total: -6.14 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.12 Total: -41.55 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.18 Total: -14.03 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.61 -5.77 -38.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000556965521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.517 kcal (2) G-P(sol) polarization free energy of solvation -32.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds