Wall clock time and date at job start Mon Mar 30 2020 20:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47398 * 239.99583 * 3 2 1 5 5 H 1.48496 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47212 * 119.99882 * 3 2 1 7 7 C 1.38808 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00163 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64112 * 0.05504 * 9 7 2 11 11 C 1.54918 * 104.82827 * 204.07745 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 H 1.09004 * 110.71350 * 154.04091 * 12 11 10 14 14 N 1.46498 * 110.71751 * 277.13480 * 12 11 10 15 15 C 1.34783 * 119.99576 * 205.00331 * 14 12 11 16 16 O 1.21584 * 120.00230 * 359.97438 * 15 14 12 17 17 C 1.47540 * 119.99465 * 180.02562 * 15 14 12 18 18 C 1.39709 * 120.19397 * 359.72228 * 17 15 14 19 19 C 1.37784 * 119.90538 * 179.69288 * 18 17 15 20 20 C 1.38552 * 120.30264 * 0.61151 * 19 18 17 21 21 C 1.38056 * 120.38711 * 359.66497 * 20 19 18 22 22 C 1.38702 * 120.08573 * 0.02746 * 21 20 19 23 23 O 1.35655 * 120.15428 * 179.97438 * 22 21 20 24 24 C 1.47015 * 125.65004 * 179.97438 * 9 7 2 25 25 H 0.96999 * 120.00120 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.36633 * 85.25018 * 10 9 7 27 27 H 1.08996 * 110.37033 * 322.91399 * 10 9 7 28 28 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 29 29 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 30 30 H 0.96998 * 119.99852 * 25.00356 * 14 12 11 31 31 H 1.07997 * 120.04644 * 359.97438 * 18 17 15 32 32 H 1.08007 * 119.85034 * 180.29844 * 19 18 17 33 33 H 1.07999 * 119.80194 * 179.69370 * 20 19 18 34 34 H 1.08004 * 119.95523 * 180.02562 * 21 20 19 35 35 H 0.96699 * 114.00003 * 270.02831 * 23 22 21 36 36 H 1.09000 * 109.88350 * 59.57113 * 24 9 7 37 37 H 1.08998 * 109.88602 * 298.40779 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5331 0.0011 11 6 -0.4019 -3.9321 0.6136 12 6 0.7784 -4.7524 0.0294 13 1 1.0217 -5.5938 0.6783 14 7 0.4664 -5.2176 -1.3243 15 6 1.0738 -6.3156 -1.8162 16 8 1.8810 -6.9197 -1.1368 17 6 0.7599 -6.7837 -3.1797 18 6 -0.1705 -6.0953 -3.9622 19 6 -0.4544 -6.5340 -5.2371 20 6 0.1693 -7.6630 -5.7431 21 6 1.0865 -8.3559 -4.9785 22 6 1.3891 -7.9249 -3.6954 23 8 2.2897 -8.6050 -2.9427 24 6 1.9318 -3.7275 0.0017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5269 -2.4874 -1.0175 27 1 -0.5995 -1.7585 0.6162 28 1 -1.3591 -4.3326 0.2800 29 1 -0.3526 -3.8973 1.7019 30 1 -0.1774 -4.7354 -1.8664 31 1 -0.6631 -5.2179 -3.5700 32 1 -1.1703 -5.9983 -5.8430 33 1 -0.0630 -8.0025 -6.7416 34 1 1.5689 -9.2349 -5.3800 35 1 1.9008 -9.3063 -2.4022 36 1 2.5583 -3.8507 0.8851 37 1 2.5282 -3.8646 -0.9002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010247607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:55 Heat of formation + Delta-G solvation = -19.220207 kcal Electronic energy + Delta-G solvation = -21119.838364 eV Core-core repulsion = 17863.272139 eV Total energy + Delta-G solvation = -3256.566225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.41682 -38.76657 -37.04934 -36.72573 -33.82003 -32.16004 -30.97602 -29.91916 -29.08610 -27.20494 -24.65871 -23.82293 -22.62055 -20.78651 -20.18540 -19.78400 -18.53339 -17.58825 -16.83309 -16.22238 -15.69519 -15.29593 -15.00975 -14.66971 -14.55375 -14.13998 -13.76121 -13.62792 -13.02809 -12.62058 -12.41544 -12.29778 -11.96695 -11.84874 -11.61190 -11.07500 -10.87822 -10.79873 -10.75135 -10.37140 -10.15032 -9.88368 -9.60239 -9.50372 -9.22689 -8.86944 -8.70519 -8.56478 -6.83971 -5.66325 -3.07153 0.69898 1.07335 2.94222 3.39666 3.41743 3.45274 3.46780 3.70895 4.10817 4.49628 4.63533 4.68039 4.82603 5.14660 5.19393 5.34493 5.44877 5.50004 5.56452 5.66047 5.76424 5.87158 6.02412 6.12200 6.20038 6.27447 6.36838 6.49119 6.53811 6.56264 6.74860 7.06662 7.41290 7.62039 7.62480 7.79038 7.84586 8.34150 8.49087 9.21902 9.82480 10.46959 11.37968 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.004189 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.050652 B = 6682.943732 C = 7002.743728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.915 3.085 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.077 0.923 9 N -0.603 5.603 10 C 0.151 3.849 11 C -0.154 4.154 12 C 0.131 3.869 13 H 0.091 0.909 14 N -0.706 5.706 15 C 0.555 3.445 16 O -0.529 6.529 17 C -0.160 4.160 18 C -0.069 4.069 19 C -0.138 4.138 20 C -0.082 4.082 21 C -0.160 4.160 22 C 0.165 3.835 23 O -0.477 6.477 24 C 0.126 3.874 25 H 0.252 0.748 26 H 0.009 0.991 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.398 0.602 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.394 0.606 36 H 0.032 0.968 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.583 -15.996 -8.830 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.206 4.206 3 Si 0.746 3.254 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.027 3.973 11 C -0.193 4.193 12 C 0.027 3.973 13 H 0.109 0.891 14 N -0.358 5.358 15 C 0.341 3.659 16 O -0.407 6.407 17 C -0.163 4.163 18 C -0.088 4.088 19 C -0.156 4.156 20 C -0.101 4.101 21 C -0.178 4.178 22 C 0.119 3.881 23 O -0.288 6.288 24 C 0.000 4.000 25 H 0.063 0.937 26 H 0.027 0.973 27 H 0.127 0.873 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.234 0.766 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.251 0.749 36 H 0.050 0.950 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.626 -15.807 -8.553 18.335 hybrid contribution -0.116 0.852 -0.234 0.891 sum -3.741 -14.955 -8.787 17.744 Atomic orbital electron populations 1.69767 1.04857 1.24845 1.57919 1.24758 0.95738 0.97652 1.02501 0.86140 0.78397 0.82970 0.77932 1.21270 1.21569 1.21138 1.19062 0.90554 0.82456 1.42805 0.90561 1.44509 1.01789 0.99767 1.86906 1.21953 0.84958 0.92489 0.97947 1.23355 0.95865 0.99117 1.00954 1.22011 0.96826 0.96430 0.82067 0.89135 1.45930 1.44611 1.27983 1.17242 1.18019 0.81179 0.80839 0.85828 1.90777 1.33423 1.56781 1.59721 1.20552 1.00601 0.99303 0.95893 1.21352 0.95089 0.98384 0.93989 1.21124 1.01355 0.97411 0.95734 1.21206 0.94895 0.94500 0.99482 1.21436 0.99837 1.01998 0.94548 1.18513 0.87989 0.91145 0.90494 1.84761 1.32472 1.51521 1.60013 1.21698 0.93912 0.85877 0.98559 0.93732 0.97273 0.87349 0.91760 0.90543 0.76612 0.84988 0.85117 0.85284 0.84897 0.74885 0.95014 0.95603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.58 10.09 55.49 0.56 -26.02 16 2 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 3 Si 0.92 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 8 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 9 N -0.60 -15.54 3.39 -170.07 -0.58 -16.12 16 10 C 0.15 3.54 5.85 -2.52 -0.01 3.53 16 11 C -0.15 -2.79 6.67 -24.58 -0.16 -2.96 16 12 C 0.13 2.42 3.33 -66.10 -0.22 2.20 16 13 H 0.09 1.64 7.55 -51.93 -0.39 1.25 16 14 N -0.71 -11.69 5.04 -53.07 -0.27 -11.95 16 15 C 0.55 9.40 7.76 -12.47 -0.10 9.30 16 16 O -0.53 -10.46 14.80 -16.59 -0.25 -10.70 16 17 C -0.16 -2.24 5.89 -104.84 -0.62 -2.86 16 18 C -0.07 -0.80 9.54 -39.20 -0.37 -1.17 16 19 C -0.14 -1.30 10.02 -39.63 -0.40 -1.69 16 20 C -0.08 -0.72 10.03 -39.53 -0.40 -1.11 16 21 C -0.16 -1.60 9.98 -39.48 -0.39 -2.00 16 22 C 0.17 2.14 6.72 -38.70 -0.26 1.88 16 23 O -0.48 -6.39 11.58 -40.54 -0.47 -6.86 16 24 C 0.13 2.82 6.98 -3.07 -0.02 2.80 16 25 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.11 2.87 5.87 -51.93 -0.31 2.57 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.40 5.95 6.67 -40.82 -0.27 5.68 16 31 H 0.13 1.37 6.40 -52.49 -0.34 1.03 16 32 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 33 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.39 3.61 9.06 45.56 0.41 4.02 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 LS Contribution 310.77 15.07 4.68 4.68 Total: -1.00 -33.65 310.77 -8.36 -42.01 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -3.82 Total: 6.68 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.21 Total: 1.13 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.28 Total: -54.09 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.71 Total: -17.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.65 -8.36 -42.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010247607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.788 kcal (2) G-P(sol) polarization free energy of solvation -33.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds