Wall clock time and date at job start Mon Mar 30 2020 20:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47398 * 239.99583 * 3 2 1 5 5 H 1.48496 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47212 * 119.99882 * 3 2 1 7 7 C 1.38808 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00163 * 179.97438 * 7 2 1 9 9 N 1.36944 * 120.00358 * 359.97438 * 7 2 1 10 10 C 1.47425 * 125.64112 * 0.05504 * 9 7 2 11 11 C 1.54918 * 104.82827 * 204.07745 * 10 9 7 12 12 C 1.55157 * 101.58155 * 322.99497 * 11 10 9 13 13 H 1.09004 * 110.71350 * 154.04091 * 12 11 10 14 14 N 1.46498 * 110.71751 * 277.13480 * 12 11 10 15 15 C 1.34783 * 119.99576 * 205.00331 * 14 12 11 16 16 O 1.21584 * 120.00230 * 359.97438 * 15 14 12 17 17 C 1.47540 * 119.99465 * 180.02562 * 15 14 12 18 18 C 1.39709 * 120.19397 * 359.72228 * 17 15 14 19 19 C 1.37784 * 119.90538 * 179.69288 * 18 17 15 20 20 C 1.38552 * 120.30264 * 0.61151 * 19 18 17 21 21 C 1.38056 * 120.38711 * 359.66497 * 20 19 18 22 22 C 1.38702 * 120.08573 * 0.02746 * 21 20 19 23 23 O 1.35655 * 120.15428 * 179.97438 * 22 21 20 24 24 C 1.47015 * 125.65004 * 179.97438 * 9 7 2 25 25 H 0.96999 * 120.00120 * 0.02562 * 1 2 3 26 26 H 1.08999 * 110.36633 * 85.25018 * 10 9 7 27 27 H 1.08996 * 110.37033 * 322.91399 * 10 9 7 28 28 H 1.09001 * 111.00522 * 204.91555 * 11 10 9 29 29 H 1.09000 * 110.99891 * 81.06585 * 11 10 9 30 30 H 0.96998 * 119.99852 * 25.00356 * 14 12 11 31 31 H 1.07997 * 120.04644 * 359.97438 * 18 17 15 32 32 H 1.08007 * 119.85034 * 180.29844 * 19 18 17 33 33 H 1.07999 * 119.80194 * 179.69370 * 20 19 18 34 34 H 1.08004 * 119.95523 * 180.02562 * 21 20 19 35 35 H 0.96699 * 114.00003 * 270.02831 * 23 22 21 36 36 H 1.09000 * 109.88350 * 59.57113 * 24 9 7 37 37 H 1.08998 * 109.88602 * 298.40779 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 -0.1415 -2.5331 0.0011 11 6 -0.4019 -3.9321 0.6136 12 6 0.7784 -4.7524 0.0294 13 1 1.0217 -5.5938 0.6783 14 7 0.4664 -5.2176 -1.3243 15 6 1.0738 -6.3156 -1.8162 16 8 1.8810 -6.9197 -1.1368 17 6 0.7599 -6.7837 -3.1797 18 6 -0.1705 -6.0953 -3.9622 19 6 -0.4544 -6.5340 -5.2371 20 6 0.1693 -7.6630 -5.7431 21 6 1.0865 -8.3559 -4.9785 22 6 1.3891 -7.9249 -3.6954 23 8 2.2897 -8.6050 -2.9427 24 6 1.9318 -3.7275 0.0017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5269 -2.4874 -1.0175 27 1 -0.5995 -1.7585 0.6162 28 1 -1.3591 -4.3326 0.2800 29 1 -0.3526 -3.8973 1.7019 30 1 -0.1774 -4.7354 -1.8664 31 1 -0.6631 -5.2179 -3.5700 32 1 -1.1703 -5.9983 -5.8430 33 1 -0.0630 -8.0025 -6.7416 34 1 1.5689 -9.2349 -5.3800 35 1 1.9008 -9.3063 -2.4022 36 1 2.5583 -3.8507 0.8851 37 1 2.5282 -3.8646 -0.9002 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010247607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:55 Heat of formation + Delta-G solvation = -42.485985 kcal Electronic energy + Delta-G solvation = -21120.847244 eV Core-core repulsion = 17863.272139 eV Total energy + Delta-G solvation = -3257.575105 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.52009 -40.01371 -38.61724 -37.64277 -35.48934 -33.80675 -32.18523 -30.90677 -30.70469 -28.92953 -26.55275 -24.93603 -23.49737 -22.13454 -21.95537 -21.27799 -19.54369 -18.96599 -18.49254 -17.52757 -16.78802 -16.63452 -16.33288 -16.01578 -15.90327 -15.57144 -15.14428 -14.97976 -14.39088 -14.29791 -13.80219 -13.42994 -13.29547 -13.12842 -13.01048 -12.78187 -12.63690 -12.38079 -12.13435 -12.05439 -11.86075 -11.70814 -11.46643 -10.80250 -10.76068 -10.21593 -9.96533 -9.65542 -8.91103 -7.79295 -5.23324 -0.20707 0.27967 1.46306 1.48845 1.55469 1.85175 2.14164 2.48659 2.75627 3.26703 3.30583 3.59991 3.72845 3.79349 3.88908 4.04754 4.11775 4.27839 4.37183 4.43567 4.62346 4.70569 4.74729 4.87462 4.91441 4.97425 5.02433 5.24816 5.33332 5.42236 5.44427 5.54467 5.61183 5.78967 5.81014 6.30184 6.52757 6.81924 7.10170 7.19520 7.75388 8.38912 9.21989 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.025218 B = 0.004189 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.050652 B = 6682.943732 C = 7002.743728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.058 4.058 3 Si 0.979 3.021 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.621 5.621 10 C 0.154 3.846 11 C -0.132 4.132 12 C 0.145 3.855 13 H 0.099 0.901 14 N -0.703 5.703 15 C 0.552 3.448 16 O -0.566 6.566 17 C -0.191 4.191 18 C -0.075 4.075 19 C -0.136 4.136 20 C -0.068 4.068 21 C -0.159 4.159 22 C 0.146 3.854 23 O -0.498 6.498 24 C 0.126 3.874 25 H 0.249 0.751 26 H -0.002 1.002 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.406 0.594 31 H 0.137 0.863 32 H 0.160 0.840 33 H 0.168 0.832 34 H 0.155 0.845 35 H 0.406 0.594 36 H 0.027 0.973 37 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.553 -16.804 -10.582 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.348 5.348 10 C 0.029 3.971 11 C -0.171 4.171 12 C 0.040 3.960 13 H 0.117 0.883 14 N -0.354 5.354 15 C 0.341 3.659 16 O -0.446 6.446 17 C -0.194 4.194 18 C -0.094 4.094 19 C -0.154 4.154 20 C -0.086 4.086 21 C -0.177 4.177 22 C 0.100 3.900 23 O -0.311 6.311 24 C -0.001 4.001 25 H 0.059 0.941 26 H 0.016 0.984 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.243 0.757 31 H 0.155 0.845 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.173 0.827 35 H 0.266 0.734 36 H 0.045 0.955 37 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -4.614 -16.636 -10.315 20.111 hybrid contribution 0.189 1.062 0.224 1.102 sum -4.425 -15.574 -10.091 19.078 Atomic orbital electron populations 1.69997 1.05879 1.25238 1.58114 1.25537 0.96699 1.00567 1.02282 0.85154 0.77231 0.78917 0.78002 1.20838 1.21340 1.20491 1.19358 0.90815 0.83976 1.43405 0.91079 1.44763 1.02967 1.00237 1.86839 1.21789 0.83553 0.94669 0.97042 1.23194 0.97291 0.95555 1.01070 1.21759 0.95306 0.95526 0.83456 0.88328 1.45841 1.44806 1.28111 1.16643 1.18550 0.80243 0.80226 0.86846 1.90742 1.35012 1.57869 1.60991 1.20455 1.03158 1.01014 0.94810 1.21509 0.94561 0.98469 0.94881 1.21512 1.01407 0.97577 0.94883 1.21690 0.92994 0.93279 1.00621 1.21704 0.99992 1.02775 0.93274 1.18838 0.88293 0.91176 0.91670 1.84709 1.33546 1.52206 1.60637 1.21771 0.95219 0.85821 0.97300 0.94091 0.98429 0.90413 0.88303 0.89820 0.75661 0.84493 0.82201 0.81487 0.82729 0.73446 0.95465 0.97570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.92 10.09 21.65 0.22 -54.70 16 2 C -0.06 -3.28 5.49 84.86 0.47 -2.81 16 3 Si 0.98 45.88 29.55 68.60 2.03 47.91 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.25 -14.23 10.27 84.03 0.86 -13.36 16 8 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 9 N -0.62 -32.72 3.39 -691.98 -2.35 -35.07 16 10 C 0.15 7.28 5.85 86.86 0.51 7.79 16 11 C -0.13 -4.66 6.67 31.99 0.21 -4.45 16 12 C 0.15 5.32 3.33 46.18 0.15 5.48 16 13 H 0.10 3.52 7.55 -2.39 -0.02 3.50 16 14 N -0.70 -23.12 5.04 -440.06 -2.22 -25.34 16 15 C 0.55 18.90 7.76 86.70 0.67 19.57 16 16 O -0.57 -22.86 14.80 16.94 0.25 -22.61 16 17 C -0.19 -5.26 5.89 -20.01 -0.12 -5.38 16 18 C -0.08 -1.61 9.54 22.52 0.21 -1.40 16 19 C -0.14 -2.09 10.02 22.24 0.22 -1.87 16 20 C -0.07 -0.91 10.03 22.30 0.22 -0.69 16 21 C -0.16 -2.78 9.98 22.34 0.22 -2.56 16 22 C 0.15 3.68 6.72 22.84 0.15 3.83 16 23 O -0.50 -13.44 11.58 -68.79 -0.80 -14.24 16 24 C 0.13 5.74 6.98 86.73 0.61 6.35 16 25 H 0.25 14.08 8.31 -92.71 -0.77 13.30 16 26 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 27 H 0.08 4.20 5.87 -2.39 -0.01 4.18 16 28 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 30 H 0.41 11.94 6.67 -92.71 -0.62 11.32 16 31 H 0.14 2.66 6.40 -2.91 -0.02 2.64 16 32 H 0.16 1.52 8.06 -2.91 -0.02 1.50 16 33 H 0.17 1.01 8.06 -2.91 -0.02 0.98 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.41 7.64 9.06 -74.06 -0.67 6.97 16 36 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.01 0.31 8.04 -2.39 -0.02 0.29 16 Total: -1.00 -74.34 310.77 1.36 -72.98 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.18 Total: 20.57 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 4.40 Total: 10.50 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -4.35 Total: -115.11 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.55 Total: -36.85 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -74.34 1.36 -72.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010247607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.494 kcal (2) G-P(sol) polarization free energy of solvation -74.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds