Wall clock time and date at job start Mon Mar 30 2020 20:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00224 * 2 1 4 4 H 1.48494 * 109.47356 * 270.87086 * 3 2 1 5 5 H 1.48504 * 109.46728 * 30.87240 * 3 2 1 6 6 H 1.48496 * 109.47068 * 150.86894 * 3 2 1 7 7 C 1.37877 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99849 * 358.70098 * 7 2 1 9 9 C 1.50694 * 120.00695 * 178.69524 * 7 2 1 10 10 C 1.53002 * 115.55011 * 86.65350 * 9 7 2 11 11 O 1.45202 * 109.46995 * 64.77031 * 10 9 7 12 12 C 1.34229 * 117.00111 * 184.20615 * 11 10 9 13 13 O 1.20819 * 119.99704 * 5.15077 * 12 11 10 14 14 C 1.50700 * 119.99913 * 185.15796 * 12 11 10 15 15 C 1.52991 * 109.47219 * 174.92787 * 14 12 11 16 16 C 1.50699 * 109.47566 * 179.97438 * 15 14 12 17 17 C 1.38616 * 120.45262 * 124.99665 * 16 15 14 18 18 C 1.38575 * 118.40108 * 179.70414 * 17 16 15 19 19 N 1.32340 * 119.10459 * 0.27308 * 18 17 16 20 20 C 1.31783 * 120.82359 * 0.02562 * 19 18 17 21 21 N 1.31815 * 121.74823 * 359.97438 * 20 19 18 22 22 C 1.52996 * 117.50504 * 232.33294 * 9 7 2 23 23 C 1.53004 * 117.49912 * 300.99411 * 9 7 2 24 24 H 0.96999 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47103 * 304.77093 * 10 9 7 26 26 H 1.08996 * 109.46962 * 184.76941 * 10 9 7 27 27 H 1.09003 * 109.47498 * 54.92224 * 14 12 11 28 28 H 1.09003 * 109.46570 * 294.92295 * 14 12 11 29 29 H 1.09003 * 109.47345 * 59.99343 * 15 14 12 30 30 H 1.09008 * 109.47116 * 299.99996 * 15 14 12 31 31 H 1.08000 * 120.79917 * 359.97438 * 17 16 15 32 32 H 1.08008 * 120.44534 * 180.29773 * 18 17 16 33 33 H 1.07998 * 119.12697 * 179.97438 * 20 19 18 34 34 H 1.08992 * 117.50152 * 215.00204 * 22 9 7 35 35 H 1.09008 * 117.49522 * 0.02562 * 22 9 7 36 36 H 1.09009 * 117.49598 * 359.96515 * 23 9 7 37 37 H 1.08992 * 117.50357 * 144.96599 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4784 2.0570 -1.3998 5 1 1.4560 2.6472 0.7185 6 1 3.5558 1.4348 0.6816 7 6 2.0046 -1.1940 0.0005 8 1 1.4648 -2.1293 0.0222 9 6 3.5112 -1.1944 -0.0292 10 6 4.1982 -1.0976 1.3345 11 8 3.8955 -2.2846 2.1142 12 6 4.3534 -2.3183 3.3755 13 8 4.9049 -1.3508 3.8440 14 6 4.1798 -3.5631 4.2071 15 6 4.8948 -3.3846 5.5478 16 6 4.7207 -4.6291 6.3797 17 6 5.8256 -5.2972 6.8840 18 6 5.6161 -6.4337 7.6488 19 7 4.3768 -6.8438 7.8664 20 6 3.3503 -6.1863 7.3657 21 7 3.5114 -5.1019 6.6338 22 6 4.1965 -2.0364 -1.1072 23 6 4.1946 -0.5094 -1.2145 24 1 -0.4849 0.8401 -0.0004 25 1 3.8366 -0.2147 1.8617 26 1 5.2762 -1.0206 1.1936 27 1 4.6063 -4.4157 3.6785 28 1 3.1182 -3.7380 4.3819 29 1 4.4684 -2.5320 6.0764 30 1 5.9565 -3.2096 5.3729 31 1 6.8254 -4.9383 6.6892 32 1 6.4530 -6.9771 8.0621 33 1 2.3505 -6.5456 7.5600 34 1 5.1366 -2.5216 -0.8449 35 1 3.5575 -2.5899 -1.7953 36 1 3.5543 -0.0591 -1.9731 37 1 5.1332 0.0103 -1.0227 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755800607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:12:12 Heat of formation + Delta-G solvation = -17.169767 kcal Electronic energy + Delta-G solvation = -20327.015218 eV Core-core repulsion = 17070.537907 eV Total energy + Delta-G solvation = -3256.477311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.28770 -39.94914 -37.24213 -35.67745 -35.06338 -33.04262 -32.11208 -31.39264 -27.64192 -26.07276 -25.09830 -24.60854 -22.59799 -21.71782 -20.20995 -19.16169 -17.89431 -17.51725 -16.77486 -16.50645 -16.17350 -15.75012 -15.59478 -14.99859 -14.89701 -14.20373 -13.93548 -13.73959 -13.18331 -12.81261 -12.68371 -12.53696 -12.29003 -11.91778 -11.45823 -11.16150 -11.10956 -10.89055 -10.79358 -10.58157 -10.30370 -10.12558 -9.97837 -9.86430 -9.62917 -9.48706 -9.05018 -8.60433 -8.59377 -6.12652 -4.15772 0.62708 0.76776 2.61305 3.09042 3.26458 3.36696 3.39214 3.51858 3.78038 3.90992 4.19167 4.39033 4.61732 4.74926 4.82475 4.87159 4.97439 5.12924 5.20775 5.25692 5.44931 5.52700 5.63849 5.79214 5.87724 5.93985 5.96425 6.10215 6.11274 6.27090 6.39549 6.64727 6.72554 6.90087 7.05274 7.13313 7.67951 7.82110 8.23514 8.49093 8.92223 9.49339 10.99219 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.028594 B = 0.003494 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.001951 B = 8012.569619 C = 8254.592617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.077 3.923 3 Si 0.876 3.124 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.482 4.482 8 H 0.081 0.919 9 C -0.005 4.005 10 C 0.107 3.893 11 O -0.330 6.330 12 C 0.457 3.543 13 O -0.526 6.526 14 C -0.106 4.106 15 C -0.062 4.062 16 C 0.183 3.817 17 C -0.225 4.225 18 C 0.148 3.852 19 N -0.528 5.528 20 C 0.298 3.702 21 N -0.515 5.515 22 C -0.173 4.173 23 C -0.191 4.191 24 H 0.265 0.735 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.198 0.802 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.445 -10.084 12.040 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.126 4.126 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.185 1.185 7 C -0.520 4.520 8 H 0.099 0.901 9 C -0.006 4.006 10 C 0.034 3.966 11 O -0.245 6.245 12 C 0.301 3.699 13 O -0.416 6.416 14 C -0.144 4.144 15 C -0.099 4.099 16 C 0.037 3.963 17 C -0.247 4.247 18 C -0.018 4.018 19 N -0.243 5.243 20 C 0.011 3.989 21 N -0.229 5.229 22 C -0.210 4.210 23 C -0.228 4.228 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.214 0.786 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.487 -9.985 12.308 19.574 hybrid contribution 1.265 1.386 -0.141 1.881 sum 12.752 -8.599 12.167 19.611 Atomic orbital electron populations 1.69886 1.06274 1.27128 1.49933 1.24994 0.94650 0.98958 0.93995 0.86908 0.80531 0.83611 0.78543 1.20185 1.21799 1.18546 1.20226 0.85933 0.94681 1.51131 0.90074 1.19327 0.95592 1.00984 0.84725 1.23056 0.96897 0.84853 0.91821 1.86541 1.69965 1.44510 1.23514 1.23498 0.74986 0.89369 0.82067 1.90614 1.41177 1.37119 1.72731 1.21195 1.05182 0.94771 0.93270 1.20442 1.02607 0.93549 0.93348 1.21701 0.88419 0.94505 0.91693 1.22822 1.01495 0.98565 1.01770 1.23235 0.94879 0.92258 0.91388 1.68426 1.00239 1.32899 1.22686 1.25049 0.98745 0.86941 0.88203 1.68287 1.25761 1.13856 1.14987 1.22821 1.01072 0.92500 1.04602 1.23007 1.01272 0.95555 1.03004 0.92481 0.91272 0.93651 0.88106 0.86370 0.88008 0.88872 0.83348 0.81503 0.78595 0.90815 0.89136 0.88756 0.90750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.56 24.89 -169.99 -4.23 17.33 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.12 5.73 56.52 0.32 -5.80 16 7 C -0.48 -13.44 9.35 -34.44 -0.32 -13.76 16 8 H 0.08 2.48 8.06 -52.48 -0.42 2.06 16 9 C -0.01 -0.12 1.06 -155.66 -0.16 -0.29 16 10 C 0.11 2.35 4.99 37.16 0.19 2.53 16 11 O -0.33 -6.85 10.15 -39.26 -0.40 -7.25 16 12 C 0.46 8.05 7.94 36.01 0.29 8.34 16 13 O -0.53 -10.24 15.65 -18.74 -0.29 -10.54 16 14 C -0.11 -1.36 5.68 -27.89 -0.16 -1.52 16 15 C -0.06 -0.67 4.95 -27.89 -0.14 -0.80 16 16 C 0.18 1.89 6.21 -82.24 -0.51 1.38 16 17 C -0.22 -1.80 9.80 -39.32 -0.39 -2.18 16 18 C 0.15 1.17 11.30 -17.21 -0.19 0.98 16 19 N -0.53 -5.27 10.44 -14.58 -0.15 -5.43 16 20 C 0.30 2.99 12.29 -92.15 -1.13 1.86 16 21 N -0.51 -5.93 10.03 -10.80 -0.11 -6.04 16 22 C -0.17 -3.46 9.96 -26.70 -0.27 -3.72 16 23 C -0.19 -3.97 7.62 -26.69 -0.20 -4.17 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.07 1.63 6.46 -51.93 -0.34 1.29 16 26 H 0.05 0.89 8.09 -51.93 -0.42 0.47 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.12 1.56 7.98 -51.93 -0.41 1.15 16 29 H 0.10 1.20 8.05 -51.93 -0.42 0.78 16 30 H 0.09 0.87 7.94 -51.92 -0.41 0.46 16 31 H 0.15 0.79 8.01 -52.49 -0.42 0.37 16 32 H 0.17 0.76 8.06 -52.48 -0.42 0.33 16 33 H 0.20 1.41 8.06 -52.49 -0.42 0.98 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 36 H 0.09 2.03 7.29 -51.92 -0.38 1.65 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -33.20 320.56 -7.65 -40.85 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.97 Total: 1.85 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -3.10 Total: -9.27 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: 0.51 Total: -37.80 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.69 Total: -17.79 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.23 Total: 17.33 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.20 -7.65 -40.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755800607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.676 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds