Wall clock time and date at job start Mon Mar 30 2020 20:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46990 * 212.93061 * 3 2 1 5 5 H 1.09002 * 109.47367 * 305.00595 * 4 3 2 6 6 C 1.52998 * 109.47194 * 184.99904 * 4 3 2 7 7 O 1.45205 * 109.47083 * 65.00219 * 4 3 2 8 8 C 1.34750 * 117.00363 * 210.00258 * 7 4 3 9 9 O 1.21531 * 119.99734 * 359.97438 * 8 7 4 10 10 C 1.47287 * 120.00334 * 180.02562 * 8 7 4 11 11 C 1.41343 * 126.42421 * 359.97075 * 10 8 7 12 12 N 1.30429 * 108.00976 * 180.02562 * 11 10 8 13 13 N 1.39926 * 108.92424 * 359.97438 * 12 11 10 14 14 C 1.46491 * 125.74841 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46957 * 90.02368 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.34227 * 108.51030 * 0.26454 * 13 12 11 24 24 C 1.50694 * 126.29821 * 179.73832 * 23 13 12 25 25 H 4.44648 * 5.63356 * 179.97438 * 4 1 2 26 26 H 1.09007 * 109.47036 * 92.93434 * 3 2 1 27 27 H 1.08996 * 109.47377 * 332.93657 * 3 2 1 28 28 H 1.09003 * 109.46958 * 59.99881 * 6 4 3 29 29 H 1.09005 * 109.47083 * 180.02562 * 6 4 3 30 30 H 1.08997 * 109.47134 * 300.00364 * 6 4 3 31 31 H 1.08004 * 125.99586 * 359.97438 * 11 10 8 32 32 H 1.09004 * 109.47166 * 330.02634 * 14 13 12 33 33 H 1.08994 * 109.47507 * 210.02340 * 14 13 12 34 34 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47303 * 89.99922 * 24 23 13 36 36 H 1.09004 * 109.47706 * 210.00193 * 24 23 13 37 37 H 1.09000 * 109.47395 * 329.99807 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1554 1.2116 0.7842 5 1 2.7203 2.1215 0.3707 6 6 4.6802 1.2822 0.6797 7 8 2.7714 1.0818 2.1785 8 6 2.5609 2.2227 2.8639 9 8 2.6950 3.2969 2.3116 10 6 2.1692 2.1680 4.2827 11 6 1.9761 1.0004 5.0556 12 7 1.6357 1.3661 6.2604 13 7 1.5957 2.7637 6.3162 14 6 1.2543 3.5637 7.4949 15 6 2.5061 3.8626 8.2789 16 1 3.4606 3.4938 7.9334 17 6 2.4337 4.6121 9.4339 18 7 3.5269 4.8775 10.1152 19 14 0.7829 5.2504 10.0311 20 1 0.1636 4.2499 10.9370 21 1 0.9815 6.5263 10.7647 22 1 -0.1088 5.4827 8.8666 23 6 1.9165 3.2478 5.1061 24 6 1.9906 4.7020 4.7180 25 1 -1.0502 -0.0002 -0.0004 26 1 3.0093 0.0534 -1.0264 27 1 3.0098 -0.9143 0.4675 28 1 4.9685 1.3796 -0.3670 29 1 5.0432 2.1447 1.2388 30 1 5.1152 0.3724 1.0932 31 1 2.0897 -0.0162 4.7090 32 1 0.5570 3.0078 8.1218 33 1 0.7921 4.4986 7.1781 34 1 3.4759 5.4045 10.9279 35 1 2.9993 5.0747 4.8960 36 1 1.7448 4.8092 3.6614 37 1 1.2811 5.2743 5.3158 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263387610.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:49 Heat of formation + Delta-G solvation = 29.653125 kcal Electronic energy + Delta-G solvation = -20699.149080 eV Core-core repulsion = 17444.702162 eV Total energy + Delta-G solvation = -3254.446918 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96920 -39.79362 -36.70175 -34.48236 -33.92158 -32.26310 -31.93221 -31.32622 -28.10125 -27.57769 -26.92205 -23.77377 -22.69040 -21.47613 -20.19622 -18.98541 -18.35057 -17.54431 -17.25409 -16.36124 -15.75699 -15.29510 -14.79558 -14.47992 -14.16039 -14.13434 -13.82419 -13.40570 -12.99984 -12.82248 -12.60256 -12.47382 -12.35412 -12.21365 -12.08702 -11.72059 -11.35374 -11.25409 -10.86317 -10.65674 -10.45505 -10.41533 -10.27239 -10.17704 -9.85591 -9.79064 -8.87483 -8.71281 -8.12084 -6.35415 -4.40536 1.87455 2.63142 2.65372 2.72856 2.83641 3.09786 3.14847 3.17025 3.31898 3.64317 4.13236 4.18379 4.71135 4.88605 4.93196 4.98567 5.03862 5.07514 5.30446 5.34662 5.45921 5.51323 5.66812 5.72281 5.84866 5.91841 5.98204 6.02603 6.21552 6.33088 6.39664 6.53140 6.74478 7.00368 7.14549 7.47274 7.52201 8.14523 8.16639 8.28108 8.67605 9.18063 10.76759 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.003841 C = 0.003721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.615019 B = 7288.799025 C = 7522.283345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.188 4.188 3 C -0.008 4.008 4 C 0.091 3.909 5 H 0.088 0.912 6 C -0.170 4.170 7 O -0.348 6.348 8 C 0.552 3.448 9 O -0.529 6.529 10 C -0.315 4.315 11 C 0.084 3.916 12 N -0.295 5.295 13 N -0.311 5.311 14 C 0.224 3.776 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.082 3.918 18 N -0.882 5.882 19 Si 0.874 3.126 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.175 3.825 24 C -0.097 4.097 25 H 0.216 0.784 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.186 0.814 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.271 0.729 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -6.443 -18.338 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C -0.044 4.044 4 C 0.036 3.964 5 H 0.106 0.894 6 C -0.227 4.227 7 O -0.265 6.265 8 C 0.400 3.600 9 O -0.420 6.420 10 C -0.328 4.328 11 C -0.103 4.103 12 N -0.114 5.114 13 N -0.086 5.086 14 C 0.105 3.895 15 C -0.585 4.585 16 H 0.100 0.900 17 C -0.123 4.123 18 N -0.518 5.518 19 Si 0.700 3.300 20 H -0.195 1.195 21 H -0.204 1.204 22 H -0.189 1.189 23 C 0.038 3.962 24 C -0.155 4.155 25 H 0.233 0.767 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.203 0.797 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.406 -6.376 -16.992 18.466 hybrid contribution -0.624 0.605 -0.306 0.921 sum -4.030 -5.771 -17.298 18.675 Atomic orbital electron populations 1.24891 0.95974 1.00240 1.00873 1.22886 0.94392 1.00991 1.00517 1.18882 0.85458 0.99203 1.00843 1.22566 0.95414 0.99059 0.79375 0.89444 1.22206 0.93942 1.03638 1.02920 1.86612 1.80002 1.35322 1.24552 1.20001 0.72582 0.81450 0.86009 1.90745 1.50850 1.30089 1.70321 1.18828 1.27836 0.93447 0.92701 1.23938 0.97220 0.98956 0.90215 1.77216 1.23915 0.90351 1.19879 1.48939 1.46618 1.04288 1.08785 1.20204 0.98725 0.89486 0.81046 1.21081 0.93203 1.35482 1.08716 0.89966 1.24790 0.96854 0.95021 0.95657 1.69860 1.27618 1.37825 1.16518 0.86889 0.83899 0.79318 0.79913 1.19468 1.20364 1.18872 1.21434 0.93056 0.96347 0.85411 1.20639 1.04123 0.87619 1.03091 0.76709 0.87665 0.88321 0.90770 0.91309 0.91282 0.79671 0.92960 0.92885 0.91921 0.89159 0.88742 0.90728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.18 19.25 29.55 0.57 -1.61 16 2 C -0.19 -2.13 13.10 -37.12 -0.49 -2.62 16 3 C -0.01 -0.07 5.43 -29.52 -0.16 -0.23 16 4 C 0.09 1.04 2.54 -26.73 -0.07 0.97 16 5 H 0.09 1.10 7.16 -51.93 -0.37 0.73 16 6 C -0.17 -1.60 9.55 37.16 0.35 -1.24 16 7 O -0.35 -5.12 9.47 -40.63 -0.38 -5.50 16 8 C 0.55 9.58 7.93 34.41 0.27 9.85 16 9 O -0.53 -9.73 14.11 -19.29 -0.27 -10.00 16 10 C -0.31 -5.93 6.13 -105.08 -0.64 -6.58 16 11 C 0.08 1.54 11.87 -16.97 -0.20 1.34 16 12 N -0.29 -6.34 12.50 30.87 0.39 -5.95 16 13 N -0.31 -6.87 3.56 -57.77 -0.21 -7.07 16 14 C 0.22 5.17 5.04 -5.20 -0.03 5.14 16 15 C -0.55 -14.87 9.94 -34.44 -0.34 -15.21 16 16 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 17 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 18 N -0.88 -25.65 13.96 55.43 0.77 -24.88 16 19 Si 0.87 19.60 27.47 -169.99 -4.67 14.93 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 23 C 0.17 3.50 7.01 -81.59 -0.57 2.93 16 24 C -0.10 -1.67 9.56 36.00 0.34 -1.32 16 25 H 0.22 1.62 7.80 -54.08 -0.42 1.20 16 26 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 27 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.19 2.69 8.06 -52.48 -0.42 2.27 16 32 H 0.05 1.19 7.58 -51.93 -0.39 0.80 16 33 H 0.05 1.13 6.05 -51.93 -0.31 0.82 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.53 6.52 -51.93 -0.34 1.19 16 37 H 0.07 1.20 7.04 -51.93 -0.37 0.83 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -32.05 330.06 -5.21 -37.26 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -4.75 Total: 2.68 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: -1.06 Total: -6.44 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.95 Total: -37.90 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: -0.66 Total: -15.51 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.67 Total: 14.93 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.05 -5.21 -37.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263387610.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.912 kcal (2) G-P(sol) polarization free energy of solvation -32.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds