Wall clock time and date at job start Mon Mar 30 2020 20:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47038 * 79.37924 * 3 2 1 5 5 H 1.08996 * 109.47329 * 54.99727 * 4 3 2 6 6 C 1.53008 * 109.47107 * 174.99927 * 4 3 2 7 7 O 1.45199 * 109.46751 * 294.99469 * 4 3 2 8 8 C 1.34760 * 116.99442 * 150.00342 * 7 4 3 9 9 O 1.21521 * 120.00412 * 359.97438 * 8 7 4 10 10 C 1.47290 * 119.99675 * 180.02562 * 8 7 4 11 11 C 1.41344 * 126.42832 * 0.02562 * 10 8 7 12 12 N 1.30431 * 108.01197 * 179.72206 * 11 10 8 13 13 N 1.39936 * 108.91989 * 0.41508 * 12 11 10 14 14 C 1.46491 * 125.74228 * 179.84674 * 13 12 11 15 15 C 1.50702 * 109.46957 * 269.68701 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.34222 * 108.50812 * 359.57802 * 13 12 11 24 24 C 1.50707 * 126.29232 * 180.24216 * 23 13 12 25 25 H 4.44641 * 5.63370 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.47219 * 319.37673 * 3 2 1 27 27 H 1.08999 * 109.47099 * 199.37654 * 3 2 1 28 28 H 1.09004 * 109.46920 * 59.99779 * 6 4 3 29 29 H 1.09000 * 109.46947 * 179.97438 * 6 4 3 30 30 H 1.09002 * 109.46467 * 299.99864 * 6 4 3 31 31 H 1.08003 * 125.99161 * 359.97438 * 11 10 8 32 32 H 1.09004 * 109.47166 * 149.68967 * 14 13 12 33 33 H 1.08994 * 109.47507 * 29.68673 * 14 13 12 34 34 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 35 35 H 1.08993 * 109.46826 * 90.00219 * 24 23 13 36 36 H 1.09001 * 109.47180 * 210.00692 * 24 23 13 37 37 H 1.08998 * 109.46656 * 330.00382 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1561 -0.2650 -1.4178 5 1 2.7211 0.4628 -2.1028 6 6 4.6809 -0.1410 -1.4428 7 8 2.7726 -1.6043 -1.8271 8 6 2.5628 -1.8053 -3.1430 9 8 2.6962 -0.8864 -3.9269 10 6 2.1707 -3.1385 -3.6309 11 6 1.9764 -4.2966 -2.8442 12 7 1.6306 -5.2710 -3.6392 13 7 1.5967 -4.7934 -4.9541 14 6 1.2557 -5.5803 -6.1418 15 6 2.5077 -6.1924 -6.7153 16 1 3.4619 -6.0135 -6.2422 17 6 2.4341 -6.9859 -7.8406 18 7 1.2721 -7.2040 -8.4165 19 14 3.9849 -7.7508 -8.5470 20 1 4.2074 -9.0815 -7.9266 21 1 3.8343 -7.9085 -10.0159 22 1 5.1461 -6.8706 -8.2602 23 6 1.9235 -3.4916 -4.9432 24 6 2.0058 -2.5825 -6.1423 25 1 -1.0499 0.0002 -0.0001 26 1 3.0097 -0.7792 0.6691 27 1 3.0088 0.9703 0.3409 28 1 5.1158 -0.8689 -0.7578 29 1 5.0443 -0.3307 -2.4528 30 1 4.9687 0.8644 -1.1355 31 1 2.0901 -4.3620 -1.7721 32 1 0.7940 -4.9322 -6.8868 33 1 0.5582 -6.3710 -5.8658 34 1 1.2204 -7.7619 -9.2083 35 1 1.0355 -2.1157 -6.3115 36 1 2.7540 -1.8105 -5.9623 37 1 2.2874 -3.1637 -7.0203 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263387611.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:51 Heat of formation + Delta-G solvation = 23.258743 kcal Electronic energy + Delta-G solvation = -20671.134542 eV Core-core repulsion = 17416.410342 eV Total energy + Delta-G solvation = -3254.724199 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88122 -39.74573 -36.66983 -34.45463 -33.90666 -32.17287 -31.89945 -31.15264 -27.63735 -27.56640 -26.74525 -23.86973 -22.87162 -21.42988 -20.18138 -18.95727 -18.32631 -17.50230 -16.81648 -16.29411 -15.72594 -15.23257 -14.68520 -14.44147 -14.28693 -14.10491 -13.71086 -13.32136 -12.99523 -12.67464 -12.57420 -12.43841 -12.19869 -12.10991 -11.81872 -11.54654 -11.32783 -11.14404 -10.91479 -10.63799 -10.43882 -10.32325 -10.24408 -10.15650 -9.96481 -9.75994 -8.73529 -8.63516 -8.06088 -6.36150 -4.44389 1.94070 2.66483 2.72676 2.75357 2.89807 3.17275 3.23757 3.27194 3.43178 3.69762 4.20547 4.22480 4.72475 4.93847 4.97582 5.00107 5.06771 5.16945 5.32711 5.41601 5.47425 5.60708 5.70151 5.76558 5.87200 5.99941 6.01661 6.04814 6.39252 6.46993 6.72564 6.81496 6.86899 7.14384 7.52125 7.54512 7.71810 7.74169 8.21399 8.36449 8.61322 9.22838 10.72036 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.030251 B = 0.003799 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.362732 B = 7369.525929 C = 7652.167030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.189 4.189 3 C -0.007 4.007 4 C 0.091 3.909 5 H 0.087 0.913 6 C -0.169 4.169 7 O -0.348 6.348 8 C 0.552 3.448 9 O -0.531 6.531 10 C -0.318 4.318 11 C 0.081 3.919 12 N -0.297 5.297 13 N -0.311 5.311 14 C 0.250 3.750 15 C -0.542 4.542 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.909 3.091 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.172 3.828 24 C -0.100 4.100 25 H 0.216 0.784 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.184 0.816 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.270 0.730 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 13.502 12.783 18.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C -0.044 4.044 4 C 0.035 3.965 5 H 0.105 0.895 6 C -0.227 4.227 7 O -0.265 6.265 8 C 0.399 3.601 9 O -0.421 6.421 10 C -0.332 4.332 11 C -0.107 4.107 12 N -0.117 5.117 13 N -0.087 5.087 14 C 0.133 3.867 15 C -0.581 4.581 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.736 3.264 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.196 1.196 23 C 0.034 3.966 24 C -0.158 4.158 25 H 0.233 0.767 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.201 0.799 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.806 12.309 12.210 17.431 hybrid contribution 0.767 0.352 -0.336 0.909 sum 2.573 12.660 11.873 17.546 Atomic orbital electron populations 1.24890 0.95980 1.01025 0.99988 1.22877 0.94391 1.00512 1.01085 1.18874 0.85478 1.03674 0.96325 1.22558 0.95351 0.83399 0.95146 0.89454 1.22205 0.94010 1.02741 1.03707 1.86618 1.80062 1.33186 1.26665 1.20042 0.72524 0.87682 0.79822 1.90737 1.51116 1.44247 1.56037 1.18850 1.28167 0.93288 0.92846 1.23910 0.97520 0.89471 0.99780 1.77210 1.23673 1.22913 0.87878 1.49419 1.45672 1.06227 1.07367 1.19898 0.98152 0.91361 0.77262 1.21256 0.93126 1.31845 1.11837 0.91575 1.24929 0.97070 0.95540 0.96087 1.69915 1.23970 1.37734 1.20988 0.86308 0.82356 0.79714 0.78071 1.20208 1.20772 1.19562 1.21450 0.93256 0.86504 0.95414 1.20660 1.03773 0.97790 0.93617 0.76703 0.88359 0.87705 0.91320 0.91362 0.90796 0.79901 0.92460 0.92305 0.92063 0.90241 0.88681 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.23 19.25 29.55 0.57 -1.66 16 2 C -0.19 -2.19 13.10 -37.12 -0.49 -2.68 16 3 C -0.01 -0.07 5.43 -29.52 -0.16 -0.23 16 4 C 0.09 1.05 2.54 -26.73 -0.07 0.98 16 5 H 0.09 1.12 7.16 -51.93 -0.37 0.75 16 6 C -0.17 -1.60 9.55 37.16 0.35 -1.24 16 7 O -0.35 -5.21 9.47 -40.65 -0.39 -5.60 16 8 C 0.55 9.74 7.93 34.41 0.27 10.02 16 9 O -0.53 -9.92 14.10 -19.28 -0.27 -10.19 16 10 C -0.32 -6.12 6.13 -105.08 -0.64 -6.76 16 11 C 0.08 1.51 11.87 -16.97 -0.20 1.31 16 12 N -0.30 -6.55 12.50 30.87 0.39 -6.16 16 13 N -0.31 -7.07 3.56 -57.77 -0.21 -7.27 16 14 C 0.25 6.19 5.78 -5.20 -0.03 6.16 16 15 C -0.54 -14.50 9.39 -34.44 -0.32 -14.82 16 16 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 17 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 18 N -0.89 -24.38 13.29 55.43 0.74 -23.64 16 19 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 C 0.17 3.52 7.01 -81.59 -0.57 2.95 16 24 C -0.10 -1.78 9.34 36.01 0.34 -1.44 16 25 H 0.22 1.70 7.80 -54.09 -0.42 1.27 16 26 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.18 2.74 8.06 -52.48 -0.42 2.31 16 32 H 0.06 1.40 7.62 -51.93 -0.40 1.00 16 33 H 0.06 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.09 1.64 6.51 -51.93 -0.34 1.30 16 37 H 0.09 1.59 7.70 -51.93 -0.40 1.19 16 LS Contribution 334.50 15.07 5.04 5.04 Total: -1.00 -30.71 334.50 -5.62 -36.33 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.85 Total: 1.57 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -1.05 Total: -5.71 kcal Atomic # 7 Polarization: -37.99 SS G_CDS: 0.92 Total: -37.08 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.66 Total: -15.79 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.71 -5.62 -36.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263387611.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.594 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds