Wall clock time and date at job start Mon Mar 30 2020 20:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47522 * 2 1 4 4 H 1.08994 * 109.47210 * 185.16676 * 3 2 1 5 5 C 1.50701 * 109.46999 * 305.16908 * 3 2 1 6 6 H 1.08000 * 120.00292 * 119.99493 * 5 3 2 7 7 C 1.37880 * 119.99979 * 299.99749 * 5 3 2 8 8 N 1.31516 * 119.99784 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00018 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.47187 * 59.99901 * 9 7 5 11 11 H 1.48494 * 109.47223 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47303 * 300.00296 * 9 7 5 13 13 N 1.46903 * 109.46781 * 65.16562 * 3 2 1 14 14 C 1.46900 * 110.99971 * 86.07755 * 13 3 2 15 15 H 1.09001 * 110.88494 * 321.22897 * 14 13 3 16 16 C 1.55160 * 111.00551 * 85.11459 * 14 13 3 17 17 C 1.54323 * 102.93781 * 153.57729 * 16 14 13 18 18 N 1.47016 * 107.27617 * 337.80554 * 17 16 14 19 19 S 1.65600 * 125.64968 * 178.99730 * 18 17 16 20 20 C 1.81409 * 104.44865 * 89.97908 * 19 18 17 21 21 O 1.42109 * 104.27638 * 206.04680 * 19 18 17 22 22 O 1.42093 * 104.27941 * 333.90534 * 19 18 17 23 23 C 1.47475 * 108.72199 * 358.97832 * 18 17 16 24 24 H 1.08999 * 109.47006 * 54.84707 * 1 2 3 25 25 H 1.09000 * 109.47219 * 174.85120 * 1 2 3 26 26 H 1.09000 * 109.46673 * 294.85123 * 1 2 3 27 27 H 1.09006 * 109.47247 * 119.99952 * 2 1 3 28 28 H 1.09002 * 109.47214 * 240.00342 * 2 1 3 29 29 H 0.96998 * 120.00097 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00291 * 322.12138 * 13 3 2 31 31 H 1.09001 * 110.71962 * 271.94114 * 16 14 13 32 32 H 1.09001 * 110.71974 * 35.21442 * 16 14 13 33 33 H 1.08992 * 109.88432 * 97.22832 * 17 16 14 34 34 H 1.09007 * 109.87959 * 218.38983 * 17 16 14 35 35 H 1.08996 * 109.46865 * 59.99957 * 20 19 18 36 36 H 1.09002 * 109.46715 * 179.97438 * 20 19 18 37 37 H 1.08993 * 109.46657 * 299.99681 * 20 19 18 38 38 H 1.09001 * 110.34691 * 265.25024 * 23 18 17 39 39 H 1.08996 * 110.40464 * 142.91354 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1261 1.4438 -0.0925 5 6 1.4360 2.1889 -1.1615 6 1 0.8268 3.0628 -0.9837 7 6 1.6609 1.7561 -2.4511 8 7 2.4022 0.6915 -2.6675 9 14 0.9127 2.6817 -3.8908 10 1 1.4083 4.0816 -3.8906 11 1 1.3024 2.0193 -5.1614 12 1 -0.5669 2.6805 -3.7649 13 7 1.6549 2.0980 1.2570 14 6 2.6456 1.8399 2.3104 15 1 3.0150 0.8160 2.2541 16 6 3.8144 2.8577 2.2362 17 6 4.3269 2.9021 3.6911 18 7 3.2293 2.4434 4.5549 19 16 3.2967 2.2912 6.2025 20 6 2.7615 3.9074 6.8287 21 8 2.3287 1.2948 6.5022 22 8 4.6745 2.0806 6.4789 23 6 2.0577 2.1417 3.7115 24 1 -0.3633 0.5917 -0.8402 25 1 -0.3634 -1.0235 -0.0922 26 1 -0.3633 0.4319 0.9325 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 2.5608 0.3872 -3.5748 30 1 0.7334 1.8082 1.5484 31 1 4.5942 2.5011 1.5632 32 1 3.4531 3.8378 1.9245 33 1 5.1865 2.2412 3.8016 34 1 4.6049 3.9225 3.9553 35 1 1.7498 4.1152 6.4803 36 1 2.7752 3.8974 7.9186 37 1 3.4375 4.6805 6.4635 38 1 1.3915 3.0032 3.6659 39 1 1.5270 1.2707 4.0958 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400190810.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:22 Heat of formation + Delta-G solvation = -67.026613 kcal Electronic energy + Delta-G solvation = -20374.919522 eV Core-core repulsion = 17251.724207 eV Total energy + Delta-G solvation = -3123.195315 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.58744 -37.20451 -36.05012 -35.87431 -32.47847 -30.85604 -29.71370 -29.41931 -27.77201 -25.64210 -23.29276 -22.28494 -20.59615 -19.23590 -18.77278 -17.68432 -16.67810 -16.27342 -15.92885 -15.53298 -14.74094 -14.37286 -13.85576 -13.67432 -13.47136 -13.23257 -13.19693 -12.92415 -12.59444 -12.41023 -12.22124 -12.16328 -12.08115 -11.62237 -11.26280 -11.13899 -10.92538 -10.88934 -10.74465 -10.56693 -10.42318 -9.94762 -9.77676 -9.56282 -9.02394 -8.92474 -8.35266 -7.31783 -5.98803 -4.00508 0.10911 2.53469 3.32980 3.38036 3.40571 3.76006 3.94659 4.42051 4.49905 4.66981 4.72637 5.09217 5.11974 5.33064 5.39791 5.42186 5.52343 5.66615 5.85657 5.99262 6.12288 6.17973 6.33299 6.35630 6.38632 6.48393 6.55577 6.61865 6.89341 7.25780 7.28217 7.50584 7.69046 7.86893 8.26274 8.48375 8.58389 9.04553 9.63082 11.08181 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.036070 B = 0.004099 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.083577 B = 6829.319465 C = 7047.978384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.147 4.147 3 C 0.217 3.783 4 H 0.035 0.965 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.674 5.674 14 C 0.079 3.921 15 H 0.051 0.949 16 C -0.115 4.115 17 C 0.122 3.878 18 N -1.011 6.011 19 S 2.630 3.370 20 C -0.675 4.675 21 O -0.955 6.955 22 O -0.957 6.957 23 C 0.115 3.885 24 H 0.069 0.931 25 H 0.023 0.977 26 H 0.027 0.973 27 H 0.011 0.989 28 H 0.093 0.907 29 H 0.260 0.740 30 H 0.329 0.671 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.128 0.872 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.907 5.384 15.042 16.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.306 5.306 14 C -0.033 4.033 15 H 0.069 0.931 16 C -0.155 4.155 17 C -0.003 4.003 18 N -0.850 5.850 19 S 2.723 3.277 20 C -0.824 4.824 21 O -0.946 6.946 22 O -0.947 6.947 23 C -0.010 4.010 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.148 0.852 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.092 0.908 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.518 5.124 15.293 16.200 hybrid contribution -0.795 0.216 -0.707 1.086 sum 0.723 5.340 14.586 15.549 Atomic orbital electron populations 1.21598 0.97648 0.98752 1.00766 1.22126 0.95063 1.01158 1.00337 1.19229 0.96066 0.88523 0.85242 0.94760 1.20996 1.30652 1.11520 0.89612 0.92076 1.24906 0.95537 0.95141 0.98721 1.69869 1.38910 1.23908 1.20815 0.86634 0.79529 0.79949 0.81676 1.20400 1.21567 1.20419 1.60895 1.03434 1.62991 1.03236 1.22572 0.93983 0.97097 0.89667 0.93121 1.22643 0.98097 1.01355 0.93363 1.21775 0.88984 0.98617 0.90958 1.58457 1.21588 1.82097 1.22839 1.04287 0.74337 0.76820 0.72223 1.30593 1.13240 1.25865 1.12702 1.93603 1.63466 1.54442 1.83069 1.93594 1.32714 1.84924 1.83481 1.22208 0.87103 1.00878 0.90815 0.91208 0.95769 0.95364 0.97042 0.88887 0.93052 0.85214 0.90452 0.89625 0.91261 0.92078 0.85370 0.85746 0.85488 0.90845 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.40 37.16 0.35 -2.33 16 2 C -0.15 -3.33 5.50 -26.73 -0.15 -3.47 16 3 C 0.22 5.04 2.21 -68.86 -0.15 4.88 16 4 H 0.03 0.89 7.70 -51.93 -0.40 0.49 16 5 C -0.49 -12.58 7.25 -34.44 -0.25 -12.83 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.52 5.28 -17.82 -0.09 1.43 16 8 N -0.90 -24.57 11.38 55.43 0.63 -23.94 16 9 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -12.91 6.11 -98.71 -0.60 -13.51 16 14 C 0.08 1.29 3.09 -65.56 -0.20 1.09 16 15 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 16 C -0.12 -1.68 6.43 -24.90 -0.16 -1.84 16 17 C 0.12 1.47 6.90 -3.07 -0.02 1.45 16 18 N -1.01 -12.24 3.62 -111.39 -0.40 -12.65 16 19 S 2.63 28.99 6.29 -107.50 -0.68 28.31 16 20 C -0.67 -4.60 10.99 101.05 1.11 -3.49 16 21 O -0.96 -13.71 17.28 -57.54 -0.99 -14.70 16 22 O -0.96 -13.41 17.60 -57.54 -1.01 -14.42 16 23 C 0.12 1.55 6.56 -2.50 -0.02 1.53 16 24 H 0.07 1.58 6.85 -51.93 -0.36 1.22 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.03 0.51 6.63 -51.93 -0.34 0.17 16 27 H 0.01 0.23 7.47 -51.93 -0.39 -0.15 16 28 H 0.09 2.38 6.22 -51.93 -0.32 2.06 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.33 6.02 6.45 -39.29 -0.25 5.76 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.12 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.06 7.67 -51.93 -0.40 0.66 16 LS Contribution 322.46 15.07 4.86 4.86 Total: -1.00 -31.26 322.46 -9.00 -40.26 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.19 Total: 3.65 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 0.42 Total: -13.58 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.38 Total: -50.10 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -2.01 Total: -29.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 28.99 SS G_CDS: -0.68 Total: 28.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.26 -9.00 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400190810.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.769 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds