Wall clock time and date at job start Mon Mar 30 2020 20:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47281 * 2 1 4 4 H 1.08998 * 109.47101 * 54.61306 * 3 2 1 5 5 C 1.50700 * 109.47546 * 174.61698 * 3 2 1 6 6 H 1.08001 * 119.99716 * 119.99796 * 5 3 2 7 7 C 1.37879 * 120.00045 * 300.00590 * 5 3 2 8 8 N 1.31511 * 119.99430 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99959 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47018 * 59.99604 * 9 7 5 11 11 H 1.48498 * 109.46935 * 179.97438 * 9 7 5 12 12 H 1.48491 * 109.47190 * 299.99538 * 9 7 5 13 13 N 1.46898 * 109.46972 * 294.61890 * 3 2 1 14 14 C 1.46903 * 111.00091 * 154.35825 * 13 3 2 15 15 H 1.08992 * 110.64450 * 36.92129 * 14 13 3 16 16 C 1.55161 * 110.71608 * 273.78236 * 14 13 3 17 17 C 1.54914 * 101.58183 * 206.13311 * 16 14 13 18 18 N 1.47424 * 104.83075 * 37.00997 * 17 16 14 19 19 S 1.65594 * 125.64855 * 155.90797 * 18 17 16 20 20 C 1.81403 * 104.45275 * 89.97530 * 19 18 17 21 21 O 1.42106 * 104.27786 * 206.04850 * 19 18 17 22 22 O 1.42104 * 104.27778 * 333.90031 * 19 18 17 23 23 C 1.47322 * 108.73581 * 335.71804 * 18 17 16 24 24 H 1.08994 * 109.47271 * 295.64453 * 1 2 3 25 25 H 1.09001 * 109.47207 * 55.64997 * 1 2 3 26 26 H 1.08998 * 109.46959 * 175.64741 * 1 2 3 27 27 H 1.08997 * 109.47288 * 120.00250 * 2 1 3 28 28 H 1.09003 * 109.47219 * 239.99793 * 2 1 3 29 29 H 0.97005 * 119.99133 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00532 * 278.30812 * 13 3 2 31 31 H 1.08997 * 111.00944 * 324.20656 * 16 14 13 32 32 H 1.08998 * 111.00579 * 88.02236 * 16 14 13 33 33 H 1.08995 * 110.36954 * 155.85119 * 17 16 14 34 34 H 1.09005 * 110.36519 * 278.06282 * 17 16 14 35 35 H 1.08997 * 109.46727 * 59.99871 * 20 19 18 36 36 H 1.09000 * 109.46788 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.46618 * 300.00168 * 20 19 18 38 38 H 1.09006 * 110.06240 * 241.87302 * 23 18 17 39 39 H 1.08995 * 109.85190 * 120.61447 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6001 1.9834 0.8378 5 6 3.5411 1.4446 0.1333 6 1 4.1512 1.8875 -0.6401 7 6 4.1355 0.8811 1.2424 8 7 3.3924 0.3422 2.1842 9 14 5.9962 0.8831 1.4073 10 1 6.4916 2.2831 1.4069 11 1 6.3811 0.2226 2.6804 12 1 6.5951 0.1459 0.2659 13 7 1.6593 2.0964 -1.2591 14 6 1.5646 3.5524 -1.0885 15 1 2.3375 3.9107 -0.4086 16 6 0.1555 3.9548 -0.5786 17 6 0.0358 5.4058 -1.1078 18 7 0.6965 5.3825 -2.4255 19 16 0.4064 6.4365 -3.6694 20 6 1.5819 7.7912 -3.3984 21 8 0.7507 5.7036 -4.8372 22 8 -0.9255 6.8803 -3.4492 23 6 1.6612 4.2694 -2.4516 24 1 -0.3633 0.4447 0.9264 25 1 -0.3634 0.5799 -0.8484 26 1 -0.3633 -1.0247 -0.0780 27 1 1.8933 -0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 3.8107 -0.0539 2.9646 30 1 2.3038 1.8603 -1.9986 31 1 -0.6141 3.3162 -1.0121 32 1 0.1124 3.9307 0.5103 33 1 -1.0122 5.6858 -1.2138 34 1 0.5466 6.0974 -0.4377 35 1 2.5991 7.4004 -3.4251 36 1 1.4600 8.5400 -4.1812 37 1 1.3931 8.2470 -2.4264 38 1 2.6710 4.6530 -2.5979 39 1 1.4057 3.5769 -3.2536 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400190812.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:26 Heat of formation + Delta-G solvation = -71.111319 kcal Electronic energy + Delta-G solvation = -20399.042526 eV Core-core repulsion = 17275.670085 eV Total energy + Delta-G solvation = -3123.372441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.48108 -37.15956 -35.99710 -35.59395 -32.41192 -31.14927 -29.77199 -29.43129 -27.86918 -25.63975 -22.74302 -22.31895 -20.10711 -19.52020 -18.87009 -17.64999 -16.64989 -16.57952 -15.99969 -15.41943 -14.68003 -14.29813 -13.81055 -13.59345 -13.49678 -13.30088 -13.22251 -12.76741 -12.56836 -12.36761 -12.16754 -12.06550 -11.55189 -11.49865 -11.31455 -11.16491 -11.09261 -10.99888 -10.77747 -10.59575 -10.42791 -10.11209 -9.60851 -9.51422 -9.10121 -8.90753 -8.41537 -7.35907 -6.04618 -4.17958 0.15197 2.58165 3.23781 3.29930 3.31829 3.80127 3.98931 4.34740 4.53420 4.70226 4.78757 5.11526 5.15995 5.23828 5.43901 5.45057 5.58727 5.79320 5.90862 6.06933 6.19247 6.24994 6.35962 6.41077 6.50472 6.52376 6.71105 6.73284 7.09832 7.17541 7.41723 7.56102 7.73721 8.04250 8.08511 8.28129 8.59513 8.94332 9.49996 10.95435 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.004697 C = 0.004248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.661654 B = 5959.515596 C = 6589.516778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.034 0.966 5 C -0.548 4.548 6 H 0.053 0.947 7 C 0.069 3.931 8 N -0.883 5.883 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.679 5.679 14 C 0.086 3.914 15 H 0.062 0.938 16 C -0.115 4.115 17 C 0.116 3.884 18 N -1.010 6.010 19 S 2.630 3.370 20 C -0.676 4.676 21 O -0.954 6.954 22 O -0.958 6.958 23 C 0.120 3.880 24 H 0.035 0.965 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.090 0.910 28 H 0.030 0.970 29 H 0.262 0.738 30 H 0.331 0.669 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 11.936 -6.687 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.587 4.587 6 H 0.071 0.929 7 C -0.134 4.134 8 N -0.521 5.521 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.310 5.310 14 C -0.026 4.026 15 H 0.080 0.920 16 C -0.155 4.155 17 C -0.009 4.009 18 N -0.849 5.849 19 S 2.723 3.277 20 C -0.826 4.826 21 O -0.944 6.944 22 O -0.948 6.948 23 C -0.006 4.006 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.043 0.957 27 H 0.108 0.892 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.148 0.852 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.078 0.922 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.249 11.699 -7.160 14.686 hybrid contribution 2.745 0.614 0.663 2.890 sum -2.503 12.313 -6.497 14.145 Atomic orbital electron populations 1.21716 0.98976 0.98528 1.00366 1.21491 0.92149 0.99176 1.01665 1.19161 0.92775 0.91295 0.85891 0.94783 1.21830 0.92749 1.38682 1.05477 0.92905 1.24921 0.97839 0.94929 0.95727 1.69866 1.34886 1.38081 1.09314 0.86723 0.86085 0.78128 0.77409 1.20490 1.21249 1.20272 1.60984 1.55034 1.04484 1.10491 1.22377 0.96357 0.90398 0.93489 0.92047 1.22790 0.98428 0.93499 1.00770 1.22086 0.97341 0.99067 0.82436 1.58511 1.53523 1.43370 1.29458 1.04287 0.75400 0.75131 0.72885 1.30616 1.19378 1.20927 1.11652 1.93605 1.85424 1.69055 1.46360 1.93588 1.32939 1.82928 1.85359 1.21986 0.90541 0.87842 1.00214 0.94562 0.93080 0.95702 0.89194 0.95109 0.92789 0.85199 0.89980 0.90444 0.90162 0.92012 0.85435 0.85764 0.85508 0.92228 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.85 37.16 0.37 -2.39 16 2 C -0.11 -2.44 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 4.99 1.84 -68.87 -0.13 4.86 16 4 H 0.03 0.87 7.73 -51.93 -0.40 0.47 16 5 C -0.55 -13.92 8.33 -34.44 -0.29 -14.21 16 6 H 0.05 1.32 7.73 -52.49 -0.41 0.92 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.02 11.29 55.43 0.63 -23.40 16 9 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.05 5.45 -99.04 -0.54 -13.59 16 14 C 0.09 1.43 3.01 -65.88 -0.20 1.23 16 15 H 0.06 1.12 7.77 -51.93 -0.40 0.72 16 16 C -0.12 -1.70 6.60 -24.58 -0.16 -1.87 16 17 C 0.12 1.42 7.07 -2.53 -0.02 1.40 16 18 N -1.01 -12.67 3.63 -111.19 -0.40 -13.07 16 19 S 2.63 30.17 6.29 -107.50 -0.68 29.49 16 20 C -0.68 -5.00 10.99 101.05 1.11 -3.89 16 21 O -0.95 -14.19 17.61 -57.54 -1.01 -15.20 16 22 O -0.96 -13.62 17.28 -57.54 -0.99 -14.61 16 23 C 0.12 1.69 6.45 -2.90 -0.02 1.67 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.98 7.65 -51.93 -0.40 0.58 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 2.32 5.94 -51.93 -0.31 2.02 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.33 6.30 8.12 -39.29 -0.32 5.98 16 31 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 0.94 7.67 -51.93 -0.40 0.54 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.13 0.79 8.14 -51.92 -0.42 0.36 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.08 1.19 7.97 -51.93 -0.41 0.77 16 LS Contribution 327.61 15.07 4.94 4.94 Total: -1.00 -30.89 327.61 -9.07 -39.96 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.41 Total: 4.24 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: 0.43 Total: -14.08 kcal Atomic # 7 Polarization: -49.75 SS G_CDS: -0.32 Total: -50.06 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -2.01 Total: -29.82 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Atomic # 16 Polarization: 30.17 SS G_CDS: -0.68 Total: 29.49 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.89 -9.07 -39.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400190812.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.155 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds