Wall clock time and date at job start Mon Mar 30 2020 20:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47063 * 2 1 4 4 H 1.09009 * 109.46760 * 305.25993 * 3 2 1 5 5 C 1.50701 * 109.47307 * 185.26701 * 3 2 1 6 6 H 1.08004 * 119.99653 * 240.00187 * 5 3 2 7 7 C 1.37874 * 120.00124 * 59.98946 * 5 3 2 8 8 N 1.31517 * 120.00208 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00068 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47284 * 60.00229 * 9 7 5 11 11 H 1.48494 * 109.47268 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47055 * 300.00382 * 9 7 5 13 13 N 1.46895 * 109.47419 * 65.26013 * 3 2 1 14 14 C 1.46906 * 111.00007 * 206.97092 * 13 3 2 15 15 H 1.08995 * 110.63892 * 328.75328 * 14 13 3 16 16 C 1.55155 * 110.72154 * 91.89360 * 14 13 3 17 17 C 1.55125 * 101.48606 * 153.73236 * 16 14 13 18 18 N 1.47421 * 104.94196 * 323.22671 * 17 16 14 19 19 S 1.65605 * 125.64699 * 203.96529 * 18 17 16 20 20 C 1.81391 * 104.45053 * 270.04199 * 19 18 17 21 21 O 1.42106 * 104.27369 * 26.11344 * 19 18 17 22 22 O 1.42100 * 104.27815 * 153.96600 * 19 18 17 23 23 C 1.47019 * 108.70663 * 23.99855 * 18 17 16 24 24 H 1.09000 * 109.46757 * 58.64567 * 1 2 3 25 25 H 1.08996 * 109.46804 * 178.64647 * 1 2 3 26 26 H 1.09004 * 109.47429 * 298.64707 * 1 2 3 27 27 H 1.08998 * 109.47430 * 239.99565 * 2 1 3 28 28 H 1.09005 * 109.47104 * 119.99441 * 2 1 3 29 29 H 0.96997 * 120.00090 * 179.97438 * 8 7 5 30 30 H 1.00896 * 110.99891 * 330.92171 * 13 3 2 31 31 H 1.08992 * 111.00444 * 271.94180 * 16 14 13 32 32 H 1.09002 * 111.00161 * 35.79401 * 16 14 13 33 33 H 1.08999 * 110.41809 * 204.29409 * 17 16 14 34 34 H 1.09002 * 110.29826 * 82.08930 * 17 16 14 35 35 H 1.09000 * 109.47211 * 59.99687 * 20 19 18 36 36 H 1.09002 * 109.47275 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.47260 * 299.99757 * 20 19 18 38 38 H 1.08997 * 109.88817 * 239.52748 * 23 18 17 39 39 H 1.09001 * 109.88258 * 118.35976 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6017 1.9828 -0.8392 5 6 3.5414 1.4446 -0.1304 6 1 4.1500 1.8880 0.6438 7 6 4.1379 0.8802 -1.2379 8 7 3.3968 0.3405 -2.1808 9 14 5.9989 0.8822 -1.3992 10 1 6.5957 0.1458 -0.2561 11 1 6.3863 0.2207 -2.6710 12 1 6.4944 2.2821 -1.3990 13 7 1.6568 2.0974 1.2578 14 6 1.5318 3.5501 1.0782 15 1 2.2250 3.9039 0.3151 16 6 0.0731 3.9348 0.7155 17 6 -0.0010 5.3931 1.2392 18 7 0.8002 5.3938 2.4766 19 16 0.6393 6.4642 3.7300 20 6 1.7662 7.8229 3.3125 21 8 -0.7125 6.8954 3.6511 22 8 1.1159 5.7512 4.8631 23 6 1.7664 4.2875 2.4134 24 1 -0.3633 0.5347 -0.8776 25 1 -0.3633 -1.0274 -0.0243 26 1 -0.3634 0.4927 0.9019 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 3.8165 -0.0561 -2.9602 30 1 0.8035 1.7037 1.6251 31 1 -0.0850 3.8951 -0.3622 32 1 -0.6404 3.2970 1.2372 33 1 -1.0335 5.6675 1.4555 34 1 0.4281 6.0794 0.5090 35 1 1.4681 8.2628 2.3609 36 1 1.7240 8.5828 4.0928 37 1 2.7836 7.4397 3.2328 38 1 1.6036 3.6049 3.2474 39 1 2.7826 4.6804 2.4462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400190814.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:15:30 Heat of formation + Delta-G solvation = -67.915772 kcal Electronic energy + Delta-G solvation = -20399.826938 eV Core-core repulsion = 17276.593067 eV Total energy + Delta-G solvation = -3123.233872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.58380 -37.14936 -35.99252 -35.71778 -32.43705 -31.22392 -29.69872 -29.35114 -27.79410 -25.90508 -22.83861 -22.19197 -20.36808 -19.66010 -18.88129 -17.68054 -16.64818 -16.20989 -15.99845 -15.38734 -14.64851 -14.51729 -13.84279 -13.69466 -13.53604 -13.27838 -12.94257 -12.83002 -12.59234 -12.30754 -12.16501 -12.06501 -11.94764 -11.64827 -11.45748 -11.23326 -11.10210 -11.03673 -10.80420 -10.67996 -10.39881 -9.98496 -9.70543 -9.61448 -9.12843 -8.88056 -8.37576 -7.28384 -5.99577 -4.04007 0.16781 2.59814 3.31681 3.36613 3.39851 3.80869 3.99945 4.41935 4.55227 4.68993 4.78431 5.07451 5.15407 5.29371 5.41113 5.47419 5.57550 5.78102 5.83209 6.02449 6.11085 6.14534 6.16320 6.23784 6.35007 6.39912 6.41462 6.63580 6.82321 7.04727 7.13915 7.46320 7.75315 7.89027 8.25154 8.36412 8.70283 9.03854 9.61292 11.05525 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023656 B = 0.004748 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.371044 B = 5896.272182 C = 6582.648210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.678 5.678 14 C 0.092 3.908 15 H 0.096 0.904 16 C -0.159 4.159 17 C 0.120 3.880 18 N -1.013 6.013 19 S 2.630 3.370 20 C -0.676 4.676 21 O -0.960 6.960 22 O -0.953 6.953 23 C 0.127 3.873 24 H 0.042 0.958 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.100 0.900 28 H 0.041 0.959 29 H 0.260 0.740 30 H 0.323 0.677 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 11.717 6.092 14.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.114 3.886 4 H 0.023 0.977 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.309 5.309 14 C -0.021 4.021 15 H 0.114 0.886 16 C -0.200 4.200 17 C -0.006 4.006 18 N -0.853 5.853 19 S 2.723 3.277 20 C -0.825 4.825 21 O -0.951 6.951 22 O -0.943 6.943 23 C 0.001 3.999 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.291 11.603 6.968 14.532 hybrid contribution 0.734 0.419 -1.151 1.428 sum -4.557 12.023 5.818 14.112 Atomic orbital electron populations 1.21885 0.99572 0.99659 0.99623 1.21790 0.91243 1.00399 1.03155 1.19166 0.95358 0.89928 0.84185 0.97722 1.21193 0.91241 1.36602 1.04363 0.92055 1.24950 0.98046 0.95611 0.95856 1.69857 1.34812 1.39303 1.09617 0.86616 0.85836 0.78083 0.77143 1.20303 1.21517 1.20508 1.60595 1.37158 1.00504 1.32637 1.22506 0.94091 0.90595 0.94887 0.88605 1.23563 0.99647 0.95190 1.01590 1.21982 0.95256 0.98387 0.84941 1.58536 1.48341 1.43703 1.34676 1.04270 0.75305 0.75124 0.72973 1.30607 1.18819 1.20886 1.12220 1.93583 1.31982 1.83209 1.86283 1.93609 1.82892 1.69870 1.47957 1.21838 0.90429 0.87256 1.00366 0.93863 0.94424 0.94601 0.88219 0.94018 0.93022 0.85867 0.90110 0.90928 0.90334 0.91838 0.85544 0.85778 0.85291 0.90328 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.73 37.16 0.36 -2.40 16 2 C -0.13 -2.86 5.35 -26.73 -0.14 -3.00 16 3 C 0.22 5.11 1.88 -68.87 -0.13 4.99 16 4 H 0.01 0.13 7.83 -51.92 -0.41 -0.28 16 5 C -0.50 -12.96 8.65 -34.44 -0.30 -13.26 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.39 16 8 N -0.90 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 N -0.68 -13.24 6.11 -99.03 -0.61 -13.84 16 14 C 0.09 1.53 3.02 -65.88 -0.20 1.33 16 15 H 0.10 1.75 7.76 -51.93 -0.40 1.35 16 16 C -0.16 -2.21 6.69 -24.47 -0.16 -2.37 16 17 C 0.12 1.42 7.08 -2.41 -0.02 1.41 16 18 N -1.01 -12.72 3.62 -111.30 -0.40 -13.13 16 19 S 2.63 30.40 6.29 -107.50 -0.68 29.73 16 20 C -0.68 -5.10 10.99 101.05 1.11 -3.99 16 21 O -0.96 -13.60 17.28 -57.54 -0.99 -14.60 16 22 O -0.95 -14.40 17.60 -57.54 -1.01 -15.41 16 23 C 0.13 1.86 6.65 -3.07 -0.02 1.84 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.59 6.49 -51.93 -0.34 0.25 16 27 H 0.10 2.54 5.95 -51.93 -0.31 2.23 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.32 5.85 5.96 -39.29 -0.23 5.62 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.01 7.77 -51.93 -0.40 0.60 16 33 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.13 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.12 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.13 0.90 8.14 -51.92 -0.42 0.47 16 38 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 325.24 15.07 4.90 4.90 Total: -1.00 -31.45 325.24 -9.04 -40.49 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -6.26 Total: 4.05 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 0.41 Total: -14.06 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: -0.38 Total: -50.91 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: -2.01 Total: -30.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 30.40 SS G_CDS: -0.68 Total: 29.73 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.45 -9.04 -40.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400190814.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.428 kcal (2) G-P(sol) polarization free energy of solvation -31.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds