Wall clock time and date at job start Mon Mar 30 2020 20:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46877 * 2 1 4 4 H 1.09006 * 109.47256 * 304.40673 * 3 2 1 5 5 C 1.50702 * 109.47365 * 184.40945 * 3 2 1 6 6 H 1.07997 * 120.00373 * 245.28459 * 5 3 2 7 7 C 1.37879 * 119.99947 * 65.55403 * 5 3 2 8 8 N 1.31518 * 119.99958 * 193.18813 * 7 5 3 9 9 Si 1.86796 * 119.99923 * 13.18647 * 7 5 3 10 10 H 1.48498 * 109.47265 * 85.02727 * 9 7 5 11 11 H 1.48505 * 109.47171 * 205.02811 * 9 7 5 12 12 H 1.48497 * 109.47494 * 325.03018 * 9 7 5 13 13 N 1.46497 * 109.47638 * 64.40682 * 3 2 1 14 14 S 1.65602 * 120.00268 * 215.91502 * 13 3 2 15 15 O 1.42093 * 106.40066 * 178.31410 * 14 13 3 16 16 O 1.42093 * 106.39886 * 311.23389 * 14 13 3 17 17 N 1.65602 * 107.21855 * 64.77369 * 14 13 3 18 18 C 1.47021 * 125.64754 * 93.93349 * 17 14 13 19 19 C 1.54318 * 107.27137 * 181.02093 * 18 17 14 20 20 C 1.55161 * 102.94272 * 22.19747 * 19 18 17 21 21 H 1.09000 * 111.00719 * 82.60650 * 20 19 18 22 22 C 1.52997 * 111.00513 * 206.42298 * 20 19 18 23 23 C 1.47417 * 125.64990 * 273.63018 * 17 14 13 24 24 H 1.09001 * 109.47777 * 304.89749 * 1 2 3 25 25 H 1.09002 * 109.47309 * 64.89826 * 1 2 3 26 26 H 1.09002 * 109.46936 * 184.89818 * 1 2 3 27 27 H 1.08993 * 109.47519 * 240.00123 * 2 1 3 28 28 H 1.08997 * 109.47166 * 119.99523 * 2 1 3 29 29 H 0.97001 * 119.99829 * 179.97438 * 8 7 5 30 30 H 0.97002 * 119.99692 * 35.90876 * 13 3 2 31 31 H 1.08994 * 109.88707 * 300.44525 * 18 17 14 32 32 H 1.09000 * 109.88058 * 61.60826 * 18 17 14 33 33 H 1.08997 * 110.72151 * 140.55776 * 19 18 17 34 34 H 1.09002 * 110.72353 * 263.65806 * 19 18 17 35 35 H 1.08996 * 109.47098 * 58.54329 * 22 20 19 36 36 H 1.09002 * 109.46893 * 178.54781 * 22 20 19 37 37 H 1.09005 * 109.46916 * 298.54498 * 22 20 19 38 38 H 1.09006 * 110.36308 * 274.74982 * 23 17 14 39 39 H 1.09009 * 110.36659 * 37.06604 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6135 1.9787 -0.8479 5 6 3.5430 1.4441 -0.1092 6 1 4.1435 1.8137 0.7087 7 6 4.1513 0.9786 -1.2557 8 7 5.4437 0.7348 -1.2618 9 14 3.1399 0.6943 -2.8002 10 1 3.0178 1.9682 -3.5534 11 1 3.8105 -0.3215 -3.6510 12 1 1.7874 0.2102 -2.4241 13 7 1.6402 2.1019 1.2456 14 16 1.2216 3.7041 1.2371 15 8 0.8516 4.0293 2.5699 16 8 2.2487 4.3833 0.5280 17 7 -0.1515 3.8472 0.3224 18 6 -1.5288 3.8332 0.8365 19 6 -2.4722 3.9695 -0.3771 20 6 -1.5912 3.4839 -1.5584 21 1 -1.5945 2.3961 -1.6270 22 6 -2.0447 4.1149 -2.8764 23 6 -0.1950 4.0160 -1.1414 24 1 -0.3635 0.5879 0.8428 25 1 -0.3634 0.4360 -0.9306 26 1 -0.3633 -1.0239 0.0877 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 5.8716 0.4070 -2.0682 30 1 1.6206 1.5999 2.0754 31 1 -1.7223 2.8930 1.3528 32 1 -1.6785 4.6704 1.5182 33 1 -3.3466 3.3294 -0.2597 34 1 -2.7723 5.0079 -0.5177 35 1 -1.9916 5.2007 -2.7966 36 1 -1.3943 3.7776 -3.6834 37 1 -3.0713 3.8159 -3.0880 38 1 -0.0934 5.0688 -1.4050 39 1 0.5915 3.4280 -1.6147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408224387.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:16 Heat of formation + Delta-G solvation = -110.033065 kcal Electronic energy + Delta-G solvation = -21462.230215 eV Core-core repulsion = 18337.170001 eV Total energy + Delta-G solvation = -3125.060215 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.56449 -38.38822 -37.82997 -36.90636 -34.28855 -33.40348 -32.47267 -30.40976 -29.06013 -26.92247 -24.52670 -23.24138 -22.15446 -21.21878 -20.48924 -19.16012 -18.89513 -18.18377 -17.27095 -16.95516 -16.48680 -15.62454 -15.16456 -14.93802 -14.68083 -14.58160 -14.42338 -14.07320 -13.86915 -13.69372 -13.48814 -13.24491 -13.17684 -13.11824 -12.71277 -12.69641 -12.60299 -12.44245 -12.22826 -11.88921 -11.75021 -11.66487 -11.47587 -11.42349 -11.16352 -10.63925 -10.14346 -9.95618 -8.29672 -6.31319 -0.38708 1.33735 1.38946 1.45510 2.04803 2.34950 2.61256 3.03820 3.28365 3.59015 3.89270 4.00942 4.23772 4.35236 4.39907 4.44397 4.54327 4.60715 4.64994 4.72585 4.84945 4.87495 4.95404 5.01599 5.09906 5.16637 5.23453 5.24366 5.26770 5.38112 5.45670 5.46663 5.58345 5.60580 5.67939 6.23746 6.41924 6.71838 7.31230 8.88143 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.017338 B = 0.008690 C = 0.007249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.555062 B = 3221.288648 C = 3861.830290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.265 3.735 4 H 0.038 0.962 5 C -0.539 4.539 6 H 0.026 0.974 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.200 1.200 13 N -1.104 6.104 14 S 2.811 3.189 15 O -1.010 7.010 16 O -1.012 7.012 17 N -1.017 6.017 18 C 0.111 3.889 19 C -0.111 4.111 20 C -0.099 4.099 21 H 0.090 0.910 22 C -0.140 4.140 23 C 0.109 3.891 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.266 0.734 30 H 0.415 0.585 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.843 2.307 -2.082 22.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C 0.158 3.842 4 H 0.056 0.944 5 C -0.578 4.578 6 H 0.045 0.955 7 C -0.184 4.184 8 N -0.584 5.584 9 Si 0.735 3.265 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.122 1.122 13 N -0.865 5.865 14 S 2.820 3.180 15 O -0.994 6.994 16 O -0.995 6.995 17 N -0.859 5.859 18 C -0.014 4.014 19 C -0.149 4.149 20 C -0.119 4.119 21 H 0.108 0.892 22 C -0.197 4.197 23 C -0.016 4.016 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.249 0.751 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.123 0.877 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.138 3.066 -1.828 21.438 hybrid contribution 0.942 -0.497 -0.275 1.100 sum -20.196 2.570 -2.103 20.467 Atomic orbital electron populations 1.21790 0.94155 1.02131 1.02039 1.22155 0.96589 0.96526 1.01981 1.18589 0.92093 0.91799 0.81697 0.94421 1.21665 0.92276 1.41721 1.02137 0.95532 1.25862 0.95986 0.94222 1.02332 1.70113 1.12606 1.46093 1.29580 0.86455 0.82460 0.78631 0.78925 1.19951 1.21052 1.12207 1.55529 1.83124 1.30770 1.17104 1.00693 0.72323 0.73262 0.71680 1.93514 1.84447 1.83994 1.37486 1.93583 1.56720 1.73897 1.75317 1.58815 1.20627 1.88490 1.17964 1.21980 0.79183 1.02258 0.97944 1.22701 0.97309 1.03382 0.91550 1.22451 0.92115 1.01219 0.96104 0.89178 1.21709 1.02134 1.00909 0.94982 1.22406 0.99651 1.01206 0.78325 0.92054 0.92561 0.91594 0.92136 0.92280 0.92560 0.75081 0.90627 0.91407 0.87662 0.89511 0.92012 0.92769 0.90282 0.91011 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.85 71.98 0.71 -3.11 16 2 C -0.13 -4.88 4.88 30.59 0.15 -4.73 16 3 C 0.26 11.54 1.76 44.25 0.08 11.62 16 4 H 0.04 1.61 4.91 -2.38 -0.01 1.60 16 5 C -0.54 -30.87 9.28 25.60 0.24 -30.63 16 6 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 7 C 0.01 0.81 5.36 84.65 0.45 1.27 16 8 N -0.94 -59.61 13.96 21.45 0.30 -59.31 16 9 Si 0.91 41.03 25.86 68.60 1.77 42.81 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.20 -7.40 5.32 99.48 0.53 -6.88 16 13 N -1.10 -42.98 4.85 -172.52 -0.84 -43.82 16 14 S 2.81 109.94 6.29 -56.49 -0.36 109.59 16 15 O -1.01 -41.04 17.67 -128.00 -2.26 -43.30 16 16 O -1.01 -49.85 17.54 -128.00 -2.24 -52.09 16 17 N -1.02 -29.69 3.75 -506.04 -1.90 -31.59 16 18 C 0.11 2.31 6.95 86.73 0.60 2.92 16 19 C -0.11 -1.57 6.41 31.78 0.20 -1.37 16 20 C -0.10 -1.75 3.66 -9.33 -0.03 -1.78 16 21 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 22 C -0.14 -1.95 9.30 71.98 0.67 -1.28 16 23 C 0.11 2.91 6.41 86.93 0.56 3.47 16 24 H 0.06 1.49 7.60 -2.39 -0.02 1.47 16 25 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.06 2.33 4.69 -2.39 -0.01 2.32 16 28 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.41 14.36 8.85 -96.74 -0.86 13.50 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 1.06 8.04 -2.39 -0.02 1.04 16 35 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 38 H 0.07 1.83 8.01 -2.38 -0.02 1.81 16 39 H 0.06 1.72 6.43 -2.38 -0.02 1.70 16 Total: -1.00 -77.19 319.59 -1.89 -79.08 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 0.00 Total: 22.27 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 3.63 Total: -23.64 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -2.44 Total: -134.71 kcal Atomic # 8 Polarization: -90.89 SS G_CDS: -4.51 Total: -95.39 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.77 Total: 42.81 kcal Atomic # 16 Polarization: 109.94 SS G_CDS: -0.36 Total: 109.59 kcal Total: -77.19 -1.89 -79.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408224387.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.950 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds