Wall clock time and date at job start Mon Mar 30 2020 20:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 C 1.53497 * 114.20282 * 185.00136 * 3 2 1 5 5 N 1.47072 * 87.98625 * 220.34014 * 4 3 2 6 6 S 1.65597 * 136.06088 * 207.08232 * 5 4 3 7 7 O 1.42102 * 106.40325 * 336.46201 * 6 5 4 8 8 O 1.42093 * 106.40475 * 203.54228 * 6 5 4 9 9 N 1.65596 * 107.21801 * 89.99982 * 6 5 4 10 10 C 1.46506 * 119.99829 * 89.99878 * 9 6 5 11 11 C 1.52997 * 109.47289 * 265.00303 * 10 9 6 12 12 C 1.46502 * 120.00234 * 270.00150 * 9 6 5 13 13 C 1.50698 * 109.46865 * 264.99761 * 12 9 6 14 14 H 1.07995 * 120.00536 * 0.02562 * 13 12 9 15 15 C 1.37882 * 119.99364 * 179.97438 * 13 12 9 16 16 N 1.31509 * 120.00246 * 0.02562 * 15 13 12 17 17 Si 1.86808 * 119.99760 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47070 * 89.99713 * 17 15 13 19 19 H 1.48490 * 109.47264 * 210.00188 * 17 15 13 20 20 H 1.48507 * 109.46712 * 330.00065 * 17 15 13 21 21 C 1.47063 * 87.87974 * 27.34102 * 5 4 3 22 22 H 1.09002 * 109.47570 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47296 * 300.00298 * 1 2 3 24 24 H 1.08999 * 109.47316 * 60.00097 * 1 2 3 25 25 H 1.08997 * 109.46667 * 239.99496 * 2 1 3 26 26 H 1.08998 * 109.46573 * 119.99898 * 2 1 3 27 27 H 1.09002 * 113.41636 * 318.19469 * 3 2 1 28 28 H 1.08999 * 113.46950 * 105.56415 * 4 3 2 29 29 H 1.08998 * 113.46913 * 335.12100 * 4 3 2 30 30 H 1.09001 * 109.47060 * 25.00572 * 10 9 6 31 31 H 1.09004 * 109.47073 * 145.00061 * 10 9 6 32 32 H 1.09002 * 109.47153 * 180.02562 * 11 10 9 33 33 H 1.09001 * 109.46832 * 299.99854 * 11 10 9 34 34 H 1.08996 * 109.46952 * 59.99873 * 11 10 9 35 35 H 1.08999 * 109.46889 * 25.00398 * 12 9 6 36 36 H 1.09003 * 109.46675 * 144.99780 * 12 9 6 37 37 H 0.97005 * 120.00132 * 179.97438 * 16 15 13 38 38 H 1.09005 * 113.47021 * 87.43431 * 21 5 4 39 39 H 1.08997 * 113.46909 * 217.87173 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5647 1.5709 -0.1221 5 7 3.5008 2.6548 0.8699 6 16 4.4040 3.9947 1.2319 7 8 5.7104 3.7452 0.7314 8 8 4.1391 4.3013 2.5939 9 7 3.7947 5.2516 0.3425 10 6 2.7274 6.0899 0.8946 11 6 1.3709 5.5710 0.4134 12 6 4.3227 5.5254 -0.9963 13 6 5.3950 6.5805 -0.9073 14 1 5.6573 7.0044 0.0507 15 6 6.0419 7.0038 -2.0490 16 7 5.7229 6.4872 -3.2155 17 14 7.3717 8.3112 -1.9387 18 1 8.6901 7.6600 -1.7318 19 1 7.3996 9.0964 -3.1987 20 1 7.0822 9.2165 -0.7976 21 6 2.2853 2.0214 1.4030 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 1.4814 2.0994 -0.6668 28 1 3.8950 1.9024 -1.1065 29 1 4.1040 0.6915 0.2300 30 1 2.7644 6.0549 1.9834 31 1 2.8629 7.1182 0.5593 32 1 0.5769 6.1950 0.8238 33 1 1.3340 5.6061 -0.6754 34 1 1.2355 4.5428 0.7487 35 1 4.7456 4.6116 -1.4139 36 1 3.5168 5.8795 -1.6392 37 1 6.1778 6.7853 -4.0188 38 1 2.4872 1.2607 2.1572 39 1 1.5255 2.7367 1.7180 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416515583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:27 Heat of formation + Delta-G solvation = -74.890043 kcal Electronic energy + Delta-G solvation = -20832.685565 eV Core-core repulsion = 17709.149267 eV Total energy + Delta-G solvation = -3123.536299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50393 -38.32346 -37.69854 -36.90023 -34.74538 -34.03896 -31.56825 -28.74110 -28.49755 -26.90483 -24.97505 -23.93400 -23.20746 -21.00768 -19.74296 -18.97201 -18.40083 -18.21947 -17.40147 -16.57094 -16.30105 -15.80330 -15.28324 -15.18557 -14.77660 -14.67856 -14.34387 -13.90337 -13.64683 -13.52989 -13.40214 -13.25942 -13.16807 -13.15434 -13.09191 -12.79720 -12.70840 -12.39736 -12.25702 -12.17622 -11.81037 -11.77906 -11.65187 -11.38531 -11.09013 -10.62517 -10.05406 -9.82508 -8.22882 -6.34858 -0.43345 1.36571 1.39573 1.48823 2.01744 2.37627 2.55526 3.07760 3.17363 3.50398 3.83481 3.93691 4.07003 4.39413 4.40632 4.44678 4.53793 4.58367 4.62627 4.66018 4.73545 4.77219 4.90837 5.02556 5.02690 5.13562 5.16238 5.27312 5.30484 5.39075 5.45232 5.48949 5.62114 5.65694 5.71021 5.94986 6.08851 6.73046 7.33940 8.84801 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023761 B = 0.005584 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.133076 B = 5013.064854 C = 5156.328121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.104 4.104 4 C 0.119 3.881 5 N -1.060 6.060 6 S 2.812 3.188 7 O -1.013 7.013 8 O -1.010 7.010 9 N -0.994 5.994 10 C 0.108 3.892 11 C -0.160 4.160 12 C 0.279 3.721 13 C -0.551 4.551 14 H 0.049 0.951 15 C 0.014 3.986 16 N -0.923 5.923 17 Si 0.956 3.044 18 H -0.279 1.279 19 H -0.271 1.271 20 H -0.266 1.266 21 C 0.126 3.874 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.011 0.989 36 H 0.028 0.972 37 H 0.268 0.732 38 H 0.099 0.901 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 -11.617 6.049 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.147 4.147 3 C -0.125 4.125 4 C -0.006 4.006 5 N -0.903 5.903 6 S 2.824 3.176 7 O -0.997 6.997 8 O -0.994 6.994 9 N -0.835 5.835 10 C -0.017 4.017 11 C -0.219 4.219 12 C 0.155 3.845 13 C -0.590 4.590 14 H 0.068 0.932 15 C -0.186 4.186 16 N -0.563 5.563 17 Si 0.781 3.219 18 H -0.205 1.205 19 H -0.196 1.196 20 H -0.190 1.190 21 C 0.002 3.998 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.095 0.905 27 H 0.121 0.879 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.029 0.971 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.410 -11.321 6.541 18.027 hybrid contribution 0.936 0.921 -0.486 1.400 sum -11.474 -10.401 6.054 16.628 Atomic orbital electron populations 1.21747 0.94859 1.02101 1.02037 1.21450 0.96617 0.93339 1.03277 1.23156 0.93937 0.98804 0.96559 1.22794 0.98092 0.88323 0.91393 1.60448 1.43678 1.38071 1.48104 1.00582 0.72328 0.72510 0.72160 1.93542 1.38691 1.85667 1.81774 1.93472 1.86383 1.84859 1.34677 1.57663 1.50906 1.44813 1.30097 1.21382 0.86504 0.95653 0.98161 1.22173 0.96001 1.01878 1.01815 1.18512 0.92890 0.94969 0.78138 1.21831 1.20861 1.22755 0.93597 0.93229 1.25732 0.99104 0.98898 0.94849 1.70002 1.43308 1.44188 0.98782 0.85591 0.79166 0.79047 0.78131 1.20523 1.19599 1.19030 1.22936 0.83716 0.96018 0.97175 0.91946 0.92366 0.92907 0.90786 0.90482 0.87868 0.92058 0.88394 0.90063 0.90763 0.89285 0.92987 0.92045 0.97144 0.95356 0.92310 0.88267 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.90 71.98 0.71 -0.97 16 2 C -0.11 -1.38 5.85 30.59 0.18 -1.20 16 3 C -0.10 -1.92 4.02 -10.38 -0.04 -1.96 16 4 C 0.12 3.04 8.30 83.17 0.69 3.73 16 5 N -1.06 -33.24 4.29 -549.52 -2.36 -35.60 16 6 S 2.81 119.93 6.64 -56.49 -0.38 119.56 16 7 O -1.01 -52.84 17.11 -128.00 -2.19 -55.03 16 8 O -1.01 -44.27 16.69 -128.00 -2.14 -46.41 16 9 N -0.99 -43.12 2.82 -519.83 -1.47 -44.59 16 10 C 0.11 3.84 6.40 86.38 0.55 4.39 16 11 C -0.16 -4.31 10.24 71.98 0.74 -3.57 16 12 C 0.28 14.57 5.10 85.63 0.44 15.01 16 13 C -0.55 -32.15 9.38 25.60 0.24 -31.91 16 14 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 15 C 0.01 0.80 5.46 84.66 0.46 1.26 16 16 N -0.92 -54.89 13.29 21.45 0.28 -54.61 16 17 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 18 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 21 C 0.13 2.68 8.22 83.26 0.68 3.37 16 22 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.08 0.84 7.80 -2.39 -0.02 0.83 16 27 H 0.10 1.97 8.12 -2.39 -0.02 1.95 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.10 2.10 8.10 -2.39 -0.02 2.08 16 30 H 0.08 2.75 6.91 -2.39 -0.02 2.73 16 31 H 0.07 2.74 8.11 -2.38 -0.02 2.73 16 32 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.47 6.84 -2.39 -0.02 1.46 16 35 H 0.01 0.60 7.61 -2.39 -0.02 0.58 16 36 H 0.03 1.50 8.11 -2.39 -0.02 1.48 16 37 H 0.27 14.92 8.31 -92.70 -0.77 14.15 16 38 H 0.10 1.72 7.87 -2.38 -0.02 1.70 16 39 H 0.08 1.60 6.93 -2.39 -0.02 1.58 16 Total: -1.00 -74.11 334.09 -0.55 -74.67 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.01 Total: 6.34 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 4.65 Total: -11.85 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -3.54 Total: -134.79 kcal Atomic # 8 Polarization: -97.11 SS G_CDS: -4.33 Total: -101.44 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 119.93 SS G_CDS: -0.38 Total: 119.56 kcal Total: -74.11 -0.55 -74.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416515583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.225 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds