Wall clock time and date at job start Mon Mar 30 2020 20:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47338 * 2 1 4 4 C 1.38314 * 119.96110 * 270.27428 * 3 2 1 5 5 C 1.38278 * 120.15251 * 180.27927 * 4 3 2 6 6 C 1.38113 * 120.07154 * 359.44119 * 5 4 3 7 7 C 1.38911 * 119.92634 * 0.28511 * 6 5 4 8 8 N 1.39726 * 120.07759 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00139 * 33.33076 * 8 7 6 10 10 O 1.21383 * 119.99443 * 5.28300 * 9 8 7 11 11 C 1.49354 * 120.00121 * 185.27982 * 9 8 7 12 12 O 1.21353 * 119.99903 * 359.97438 * 11 9 8 13 13 N 1.34772 * 119.99897 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00096 * 180.02562 * 13 11 9 15 15 C 1.50695 * 109.47433 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00384 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00517 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99733 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00627 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46932 * 59.99773 * 19 17 15 21 21 H 1.48500 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.46910 * 300.00102 * 19 17 15 23 23 C 1.38067 * 119.96325 * 89.99878 * 3 2 1 24 24 H 1.09006 * 109.46523 * 59.99746 * 1 2 3 25 25 H 1.08995 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47182 * 300.00281 * 1 2 3 27 27 H 1.09004 * 109.47041 * 239.99462 * 2 1 3 28 28 H 1.08995 * 109.47014 * 120.00214 * 2 1 3 29 29 H 1.07998 * 119.92700 * 359.97438 * 4 3 2 30 30 H 1.07992 * 119.96378 * 179.72254 * 5 4 3 31 31 H 1.08003 * 120.03631 * 180.25323 * 6 5 4 32 32 H 0.96997 * 119.99891 * 213.33737 * 8 7 6 33 33 H 0.97009 * 120.00162 * 359.97438 * 13 11 9 34 34 H 1.09003 * 109.46882 * 299.99620 * 14 13 11 35 35 H 1.08997 * 109.47269 * 59.99506 * 14 13 11 36 36 H 0.97003 * 120.00212 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.04070 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2573 2.0739 -1.1983 5 6 2.7237 3.3757 -1.2029 6 6 2.9557 4.0320 -0.0101 7 6 2.7255 3.3809 1.1953 8 7 2.9596 4.0417 2.4039 9 6 2.7493 5.3697 2.4978 10 8 2.2662 5.9750 1.5631 11 6 3.1106 6.0963 3.7516 12 8 3.5931 5.4908 4.6861 13 7 2.8998 7.4241 3.8456 14 6 3.2547 8.1369 5.0752 15 6 2.9216 9.5986 4.9225 16 1 2.4885 9.9605 4.0017 17 6 3.1689 10.4740 5.9586 18 7 3.6949 10.0332 7.0805 19 14 2.7554 12.2858 5.7696 20 1 1.3009 12.4373 5.5114 21 1 3.1153 13.0084 7.0161 22 1 3.5219 12.8523 4.6308 23 6 2.2623 2.0709 1.1961 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.0728 1.5645 -2.1325 30 1 2.9025 3.8812 -2.1403 31 1 3.3161 5.0501 -0.0144 32 1 3.2736 3.5447 3.1755 33 1 2.5137 7.9080 3.0987 34 1 2.6923 7.7212 5.9113 35 1 4.3223 8.0257 5.2644 36 1 3.8693 10.6491 7.8094 37 1 2.0826 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427868823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:38 Heat of formation + Delta-G solvation = -57.547697 kcal Electronic energy + Delta-G solvation = -20040.145232 eV Core-core repulsion = 16781.917002 eV Total energy + Delta-G solvation = -3258.228230 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.83911 -39.28763 -37.94030 -35.51635 -34.39076 -33.69818 -32.39484 -30.23934 -29.29074 -27.73371 -24.93937 -24.20730 -22.73837 -22.19388 -20.86526 -19.72357 -18.70001 -17.18197 -16.60065 -16.29074 -15.83996 -15.58590 -15.22942 -14.96015 -14.48459 -14.21830 -14.06311 -13.68717 -13.51517 -13.34897 -13.14759 -12.29978 -12.22244 -12.06959 -11.92498 -11.82505 -11.42228 -11.17571 -11.10676 -11.01862 -10.91745 -10.40776 -10.32949 -9.51996 -9.17325 -8.88946 -8.84733 -8.23970 -8.12775 -6.23654 -4.31289 1.04059 1.24919 1.86995 2.63489 3.24000 3.28526 3.30766 3.50973 3.74472 4.03466 4.30794 4.50578 4.65310 4.88749 5.01549 5.05797 5.08738 5.12999 5.19505 5.29568 5.38654 5.43147 5.62548 5.72330 5.85269 5.95003 6.16576 6.22339 6.39267 6.46001 6.86506 7.00163 7.05959 7.20503 7.33849 7.53060 7.83097 7.86103 8.34932 8.53353 8.80188 9.35048 10.86371 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040469 B = 0.002942 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.718307 B = 9513.532485 C = 9818.984240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.066 4.066 4 C -0.136 4.136 5 C -0.097 4.097 6 C -0.126 4.126 7 C 0.153 3.847 8 N -0.652 5.652 9 C 0.509 3.491 10 O -0.503 6.503 11 C 0.491 3.509 12 O -0.536 6.536 13 N -0.670 5.670 14 C 0.246 3.754 15 C -0.548 4.548 16 H 0.066 0.934 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.143 4.143 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.121 0.879 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.423 0.577 33 H 0.405 0.595 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.268 0.732 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -17.879 -14.725 23.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.116 4.116 6 C -0.146 4.146 7 C 0.059 3.941 8 N -0.299 5.299 9 C 0.292 3.708 10 O -0.377 6.377 11 C 0.269 3.731 12 O -0.415 6.415 13 N -0.319 5.319 14 C 0.127 3.873 15 C -0.586 4.586 16 H 0.084 0.916 17 C -0.139 4.139 18 N -0.522 5.522 19 Si 0.734 3.266 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.163 4.163 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.139 0.861 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.261 0.739 33 H 0.239 0.761 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.174 -17.697 -14.444 23.063 hybrid contribution -0.206 1.032 0.068 1.054 sum -3.380 -16.666 -14.376 22.268 Atomic orbital electron populations 1.21756 0.94650 1.01656 1.02441 1.20534 0.96249 0.92410 1.02878 1.19643 0.98394 0.96092 0.92490 1.20991 1.01928 0.95127 0.97409 1.21013 0.98405 0.94480 0.97657 1.21203 1.01298 1.01195 0.90907 1.17759 0.98481 0.92269 0.85576 1.43257 1.65209 1.08425 1.13000 1.20913 0.78143 0.82434 0.89352 1.90745 1.40469 1.66883 1.39574 1.19674 0.81920 0.84433 0.87024 1.90735 1.44689 1.67197 1.38846 1.46427 1.58813 1.06137 1.20516 1.19349 0.97009 0.90796 0.80181 1.21164 1.44094 0.91835 1.01498 0.91587 1.24939 0.94547 0.99600 0.94768 1.69957 1.42038 1.35824 1.04431 0.86415 0.79012 0.83569 0.77614 1.19941 1.21009 1.19943 1.20769 1.02769 0.94189 0.98561 0.92495 0.92422 0.92426 0.90948 0.90967 0.86124 0.85647 0.84682 0.73930 0.76063 0.94677 0.94684 0.92242 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.90 37.16 0.37 -0.65 16 2 C -0.08 -0.60 6.06 -27.88 -0.17 -0.77 16 3 C -0.07 -0.63 5.13 -104.66 -0.54 -1.17 16 4 C -0.14 -1.30 9.70 -39.54 -0.38 -1.69 16 5 C -0.10 -1.04 10.04 -39.61 -0.40 -1.44 16 6 C -0.13 -1.66 8.65 -39.38 -0.34 -2.01 16 7 C 0.15 2.01 6.28 -83.75 -0.53 1.49 16 8 N -0.65 -9.14 5.32 -10.29 -0.05 -9.20 16 9 C 0.51 8.66 7.62 -11.63 -0.09 8.57 16 10 O -0.50 -9.17 14.16 5.47 0.08 -9.10 16 11 C 0.49 9.81 7.89 -11.63 -0.09 9.72 16 12 O -0.54 -11.78 16.48 5.49 0.09 -11.69 16 13 N -0.67 -14.40 5.54 -61.95 -0.34 -14.74 16 14 C 0.25 6.36 5.43 -5.20 -0.03 6.34 16 15 C -0.55 -14.71 9.28 -34.44 -0.32 -15.03 16 16 H 0.07 1.68 7.60 -52.48 -0.40 1.28 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 19 Si 0.91 20.71 29.54 -169.99 -5.02 15.69 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 C -0.14 -1.55 9.62 -39.38 -0.38 -1.93 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.95 6.42 -52.48 -0.34 1.62 16 32 H 0.42 5.25 8.30 -40.82 -0.34 4.91 16 33 H 0.40 8.06 7.79 -40.82 -0.32 7.74 16 34 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.92 16 37 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 LS Contribution 326.16 15.07 4.92 4.92 Total: -1.00 -30.59 326.16 -7.34 -37.93 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -4.75 Total: 7.85 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -2.99 Total: 3.12 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.34 Total: -48.72 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: 0.17 Total: -20.79 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.59 -7.34 -37.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427868823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.618 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds