Wall clock time and date at job start Mon Mar 30 2020 20:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50697 * 109.47338 * 2 1 4 4 C 1.38314 * 119.96110 * 270.27428 * 3 2 1 5 5 C 1.38278 * 120.15251 * 180.27927 * 4 3 2 6 6 C 1.38113 * 120.07154 * 359.44119 * 5 4 3 7 7 C 1.38911 * 119.92634 * 0.28511 * 6 5 4 8 8 N 1.39726 * 120.07759 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00139 * 33.33076 * 8 7 6 10 10 O 1.21383 * 119.99443 * 5.28300 * 9 8 7 11 11 C 1.49354 * 120.00121 * 185.27982 * 9 8 7 12 12 O 1.21353 * 119.99903 * 359.97438 * 11 9 8 13 13 N 1.34772 * 119.99897 * 180.02562 * 11 9 8 14 14 C 1.46494 * 120.00096 * 180.02562 * 13 11 9 15 15 C 1.50695 * 109.47433 * 179.97438 * 14 13 11 16 16 H 1.08005 * 120.00384 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00517 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99733 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00627 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46932 * 59.99773 * 19 17 15 21 21 H 1.48500 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48509 * 109.46910 * 300.00102 * 19 17 15 23 23 C 1.38067 * 119.96325 * 89.99878 * 3 2 1 24 24 H 1.09006 * 109.46523 * 59.99746 * 1 2 3 25 25 H 1.08995 * 109.47246 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47182 * 300.00281 * 1 2 3 27 27 H 1.09004 * 109.47041 * 239.99462 * 2 1 3 28 28 H 1.08995 * 109.47014 * 120.00214 * 2 1 3 29 29 H 1.07998 * 119.92700 * 359.97438 * 4 3 2 30 30 H 1.07992 * 119.96378 * 179.72254 * 5 4 3 31 31 H 1.08003 * 120.03631 * 180.25323 * 6 5 4 32 32 H 0.96997 * 119.99891 * 213.33737 * 8 7 6 33 33 H 0.97009 * 120.00162 * 359.97438 * 13 11 9 34 34 H 1.09003 * 109.46882 * 299.99620 * 14 13 11 35 35 H 1.08997 * 109.47269 * 59.99506 * 14 13 11 36 36 H 0.97003 * 120.00212 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.04070 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2573 2.0739 -1.1983 5 6 2.7237 3.3757 -1.2029 6 6 2.9557 4.0320 -0.0101 7 6 2.7255 3.3809 1.1953 8 7 2.9596 4.0417 2.4039 9 6 2.7493 5.3697 2.4978 10 8 2.2662 5.9750 1.5631 11 6 3.1106 6.0963 3.7516 12 8 3.5931 5.4908 4.6861 13 7 2.8998 7.4241 3.8456 14 6 3.2547 8.1369 5.0752 15 6 2.9216 9.5986 4.9225 16 1 2.4885 9.9605 4.0017 17 6 3.1689 10.4740 5.9586 18 7 3.6949 10.0332 7.0805 19 14 2.7554 12.2858 5.7696 20 1 1.3009 12.4373 5.5114 21 1 3.1153 13.0084 7.0161 22 1 3.5219 12.8523 4.6308 23 6 2.2623 2.0709 1.1961 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.0728 1.5645 -2.1325 30 1 2.9025 3.8812 -2.1403 31 1 3.3161 5.0501 -0.0144 32 1 3.2736 3.5447 3.1755 33 1 2.5137 7.9080 3.0987 34 1 2.6923 7.7212 5.9113 35 1 4.3223 8.0257 5.2644 36 1 3.8693 10.6491 7.8094 37 1 2.0826 1.5617 2.1315 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427868823.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:38 Heat of formation + Delta-G solvation = -78.023659 kcal Electronic energy + Delta-G solvation = -20041.033136 eV Core-core repulsion = 16781.917002 eV Total energy + Delta-G solvation = -3259.116134 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13892 -40.50399 -39.34275 -36.82438 -36.03332 -34.56908 -34.35472 -31.16423 -30.18166 -29.62343 -26.50400 -24.98686 -24.33833 -23.18980 -22.14210 -21.03558 -20.20209 -18.42957 -18.20756 -17.58430 -17.11338 -16.94674 -16.91174 -16.26108 -15.91687 -15.36260 -15.21697 -14.83283 -14.58344 -14.35156 -14.13582 -14.08385 -13.93593 -13.20840 -13.03335 -12.98745 -12.71399 -12.68802 -12.47190 -12.23429 -11.95359 -11.73894 -11.57423 -11.39799 -10.85362 -10.72542 -10.09245 -9.73674 -9.20043 -8.32812 -6.49302 -0.08965 0.40397 0.60196 1.24489 1.43872 1.46548 1.55241 2.04337 2.34932 2.66759 2.80285 3.02479 3.39350 3.79784 3.94126 4.17849 4.30384 4.38113 4.48644 4.56890 4.58294 4.70923 4.94930 5.07388 5.09432 5.14267 5.14842 5.20691 5.24805 5.28322 5.43436 5.48440 5.52889 5.67657 5.75584 5.91596 6.04325 6.44046 6.55396 6.70364 6.95575 7.23672 8.78676 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.040469 B = 0.002942 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.718307 B = 9513.532485 C = 9818.984240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.081 4.081 3 C -0.066 4.066 4 C -0.129 4.129 5 C -0.101 4.101 6 C -0.148 4.148 7 C 0.125 3.875 8 N -0.635 5.635 9 C 0.519 3.481 10 O -0.517 6.517 11 C 0.494 3.506 12 O -0.557 6.557 13 N -0.672 5.672 14 C 0.263 3.737 15 C -0.564 4.564 16 H 0.080 0.920 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.983 3.017 20 H -0.264 1.264 21 H -0.282 1.282 22 H -0.264 1.264 23 C -0.142 4.142 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.115 0.885 32 H 0.429 0.571 33 H 0.413 0.587 34 H 0.006 0.994 35 H 0.006 0.994 36 H 0.271 0.729 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 -18.912 -16.756 25.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.066 4.066 4 C -0.147 4.147 5 C -0.119 4.119 6 C -0.168 4.168 7 C 0.032 3.968 8 N -0.282 5.282 9 C 0.301 3.699 10 O -0.392 6.392 11 C 0.274 3.726 12 O -0.437 6.437 13 N -0.322 5.322 14 C 0.142 3.858 15 C -0.602 4.602 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.563 5.563 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.207 1.207 22 H -0.189 1.189 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.108 0.892 28 H 0.099 0.901 29 H 0.168 0.832 30 H 0.163 0.837 31 H 0.133 0.867 32 H 0.269 0.731 33 H 0.250 0.750 34 H 0.024 0.976 35 H 0.023 0.977 36 H 0.080 0.920 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.088 -18.784 -16.514 25.343 hybrid contribution 0.085 1.169 0.631 1.331 sum -4.003 -17.615 -15.882 24.053 Atomic orbital electron populations 1.21757 0.94432 1.02492 1.01800 1.20600 0.96271 0.90732 1.04237 1.20028 0.97281 0.97327 0.91980 1.21380 1.00091 0.94529 0.98696 1.21273 0.97970 0.95154 0.97505 1.21219 1.02684 1.00773 0.92125 1.17971 1.00757 0.93309 0.84772 1.43087 1.64044 1.07157 1.13921 1.20109 0.78706 0.83367 0.87691 1.90745 1.41608 1.67418 1.39396 1.20174 0.80654 0.83896 0.87899 1.90714 1.45295 1.67575 1.40115 1.46159 1.59581 1.06869 1.19558 1.18841 0.94669 0.91254 0.81083 1.21537 1.44162 0.92242 1.02218 0.90226 1.25969 0.94051 1.04747 0.94211 1.70093 1.43093 1.37729 1.05409 0.85236 0.79200 0.77181 0.77819 1.18866 1.20693 1.18857 1.20999 1.01984 0.93199 1.00022 0.92662 0.90908 0.93564 0.89177 0.90125 0.83193 0.83728 0.86676 0.73143 0.75033 0.97621 0.97651 0.91990 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.90 71.98 0.71 -0.91 16 2 C -0.08 -0.89 6.06 29.85 0.18 -0.71 16 3 C -0.07 -1.09 5.13 -19.89 -0.10 -1.19 16 4 C -0.13 -2.08 9.70 22.30 0.22 -1.86 16 5 C -0.10 -1.99 10.04 22.25 0.22 -1.77 16 6 C -0.15 -3.86 8.65 22.40 0.19 -3.66 16 7 C 0.12 3.21 6.28 38.21 0.24 3.45 16 8 N -0.64 -17.83 5.32 -304.82 -1.62 -19.46 16 9 C 0.52 17.95 7.62 87.24 0.67 18.61 16 10 O -0.52 -19.06 14.16 -3.35 -0.05 -19.11 16 11 C 0.49 20.31 7.89 87.24 0.69 20.99 16 12 O -0.56 -25.31 16.48 -3.26 -0.05 -25.36 16 13 N -0.67 -29.78 5.54 -468.27 -2.59 -32.38 16 14 C 0.26 14.16 5.43 85.63 0.46 14.63 16 15 C -0.56 -30.71 9.28 25.60 0.24 -30.48 16 16 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 17 C 0.01 0.59 5.46 84.65 0.46 1.05 16 18 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 19 Si 0.98 42.25 29.54 68.60 2.03 44.28 16 20 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 C -0.14 -2.85 9.62 22.40 0.22 -2.64 16 24 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.09 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.08 0.78 8.08 -2.39 -0.02 0.76 16 29 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 31 H 0.12 3.42 6.42 -2.91 -0.02 3.40 16 32 H 0.43 10.64 8.30 -92.71 -0.77 9.87 16 33 H 0.41 16.77 7.79 -92.70 -0.72 16.05 16 34 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 35 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -66.88 326.16 2.00 -64.87 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.39 Total: 25.81 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 4.40 Total: 15.51 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -3.93 Total: -106.01 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -0.10 Total: -44.47 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -66.88 2.00 -64.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427868823.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.149 kcal (2) G-P(sol) polarization free energy of solvation -66.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds