Wall clock time and date at job start Mon Mar 30 2020 20:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46744 * 2 1 4 4 H 1.09002 * 115.56087 * 29.31078 * 3 2 1 5 5 C 1.53074 * 117.49465 * 243.59790 * 3 2 1 6 6 C 1.52997 * 59.98442 * 252.51697 * 5 3 2 7 7 H 1.09000 * 117.49885 * 107.49681 * 6 5 3 8 8 C 1.52994 * 117.49830 * 252.50063 * 6 5 3 9 9 N 1.46502 * 109.47294 * 243.74625 * 8 6 5 10 10 S 1.65598 * 120.00204 * 164.99989 * 9 8 6 11 11 O 1.42100 * 106.39953 * 311.45568 * 10 9 8 12 12 O 1.42105 * 106.40088 * 178.54259 * 10 9 8 13 13 N 1.65593 * 107.21993 * 65.00171 * 10 9 8 14 14 C 1.46502 * 119.99605 * 269.99784 * 13 10 9 15 15 C 1.46499 * 120.00395 * 90.00069 * 13 10 9 16 16 C 1.50701 * 109.46992 * 264.99836 * 15 13 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 H 1.09009 * 109.46766 * 60.00445 * 1 2 3 25 25 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47471 * 300.00099 * 1 2 3 27 27 H 1.09000 * 109.47471 * 239.99901 * 2 1 3 28 28 H 1.09000 * 109.46904 * 119.99374 * 2 1 3 29 29 H 1.08993 * 117.51212 * 145.03402 * 5 3 2 30 30 H 1.09001 * 117.50908 * 359.97438 * 5 3 2 31 31 H 1.09005 * 109.47747 * 123.74437 * 8 6 5 32 32 H 1.08998 * 109.47431 * 3.74759 * 8 6 5 33 33 H 0.97004 * 119.99921 * 344.99651 * 9 8 6 34 34 H 1.09000 * 109.47587 * 270.00096 * 14 13 10 35 35 H 1.08997 * 109.47205 * 30.00247 * 14 13 10 36 36 H 1.09003 * 109.46728 * 150.00070 * 14 13 10 37 37 H 1.09002 * 109.47391 * 144.99826 * 15 13 10 38 38 H 1.09001 * 109.46813 * 24.99883 * 15 13 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8447 1.9077 -1.2162 6 6 3.5501 1.6580 0.1183 7 1 4.1802 0.7721 0.1966 8 6 4.0298 2.8805 0.9033 9 7 5.4910 2.8526 1.0056 10 16 6.3149 4.2129 1.4670 11 8 5.8084 5.2772 0.6733 12 8 7.6901 3.8564 1.5027 13 7 5.8773 4.5450 3.0291 14 6 4.7285 5.4132 3.2991 15 6 6.6387 3.9707 4.1411 16 6 5.9716 2.7011 4.6040 17 1 5.0708 2.3563 4.1182 18 6 6.5119 1.9792 5.6471 19 7 7.6092 2.3988 6.2383 20 14 5.6854 0.4052 6.2204 21 1 5.6384 -0.5663 5.0982 22 1 6.4572 -0.1769 7.3477 23 1 4.3033 0.7078 6.6715 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.7225 2.9427 -1.5350 30 1 3.0111 1.1858 -2.0158 31 1 3.5952 2.8641 1.9028 32 1 3.7191 3.7888 0.3870 33 1 5.9759 2.0371 0.8032 34 1 5.0631 6.4484 3.3654 35 1 4.0026 5.3169 2.4917 36 1 4.2651 5.1201 4.2412 37 1 6.6734 4.6840 4.9645 38 1 7.6532 3.7483 3.8101 39 1 7.9891 1.8911 6.9724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451815463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:49 Heat of formation + Delta-G solvation = -68.865981 kcal Electronic energy + Delta-G solvation = -20237.093180 eV Core-core repulsion = 17113.818104 eV Total energy + Delta-G solvation = -3123.275076 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.44704 -36.60080 -35.47963 -35.19252 -34.44220 -32.48038 -31.91197 -27.79160 -26.11985 -25.05826 -23.89004 -22.29191 -21.03802 -20.54661 -18.70009 -17.16115 -16.78809 -16.34501 -16.07264 -15.26749 -14.76815 -14.65701 -14.22920 -14.12223 -13.59158 -13.40482 -13.21252 -12.57763 -12.29273 -12.21628 -12.16914 -11.88812 -11.67898 -11.48352 -11.34472 -11.31165 -11.16593 -11.11393 -11.04407 -10.77021 -10.50649 -10.20097 -10.07234 -9.81984 -9.77965 -9.02534 -8.49148 -8.04456 -6.10601 -4.17279 1.33069 3.25834 3.31432 3.32172 3.49374 3.71797 4.21413 4.36511 4.45308 4.75551 4.83551 5.03992 5.05851 5.19201 5.23602 5.27010 5.32947 5.50235 5.58387 5.61118 5.76002 5.83967 5.89730 5.94292 5.99821 6.06545 6.09045 6.21438 6.25911 6.37560 6.57415 7.24043 7.39168 7.49883 7.66316 7.86383 8.15551 8.87269 9.48590 10.97450 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.006850 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.669854 B = 4086.537591 C = 5677.854961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.145 4.145 4 H 0.107 0.893 5 C -0.175 4.175 6 C -0.152 4.152 7 H 0.111 0.889 8 C 0.154 3.846 9 N -1.123 6.123 10 S 2.790 3.210 11 O -1.002 7.002 12 O -0.980 6.980 13 N -0.997 5.997 14 C 0.105 3.895 15 C 0.245 3.755 16 C -0.540 4.540 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.896 3.104 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.414 0.586 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.734 -1.796 -10.950 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.164 4.164 4 H 0.125 0.875 5 C -0.212 4.212 6 C -0.172 4.172 7 H 0.129 0.871 8 C 0.027 3.973 9 N -0.882 5.882 10 S 2.797 3.203 11 O -0.986 6.986 12 O -0.964 6.964 13 N -0.839 5.839 14 C -0.042 4.042 15 C 0.123 3.877 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.247 0.753 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.086 -1.139 -11.274 15.852 hybrid contribution -0.495 -1.557 0.675 1.768 sum -11.581 -2.695 -10.599 15.928 Atomic orbital electron populations 1.21743 0.95546 1.01440 1.01885 1.21130 0.95889 0.94172 1.02070 1.22501 0.93290 0.98209 1.02434 0.87526 1.23269 1.04081 1.02425 0.91447 1.22570 0.95077 0.99989 0.99562 0.87095 1.20728 0.79984 0.96919 0.99670 1.55923 1.15209 1.31304 1.85741 1.01580 0.72959 0.72861 0.72855 1.93533 1.81894 1.54385 1.68757 1.93589 1.31861 1.83908 1.87017 1.57592 1.41572 1.60331 1.24444 1.21247 0.87796 0.93259 1.01894 1.19214 0.91469 0.93327 0.83730 1.21526 1.11236 1.07910 1.17224 0.91967 1.24965 0.94870 0.97871 0.96276 1.69926 1.20001 1.39391 1.23531 0.86607 0.79379 0.83356 0.78318 1.20165 1.21222 1.20248 0.92739 0.92871 0.92571 0.91978 0.91419 0.88607 0.88886 0.91256 0.90950 0.75302 0.93693 0.93015 0.90779 0.94421 0.93086 0.92537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.87 37.16 0.37 -0.84 16 2 C -0.10 -0.88 6.22 -26.73 -0.17 -1.05 16 3 C -0.15 -1.48 5.46 -90.58 -0.49 -1.98 16 4 H 0.11 1.05 8.08 -51.93 -0.42 0.63 16 5 C -0.18 -1.78 9.83 -26.69 -0.26 -2.04 16 6 C -0.15 -1.80 5.62 -90.62 -0.51 -2.31 16 7 H 0.11 1.31 7.98 -51.93 -0.41 0.89 16 8 C 0.15 2.15 6.53 -4.04 -0.03 2.13 16 9 N -1.12 -18.41 6.05 -10.61 -0.06 -18.47 16 10 S 2.79 55.65 6.10 -107.50 -0.66 54.99 16 11 O -1.00 -20.61 16.68 -57.17 -0.95 -21.56 16 12 O -0.98 -22.97 16.69 -57.17 -0.95 -23.93 16 13 N -1.00 -20.69 3.23 -123.05 -0.40 -21.08 16 14 C 0.10 1.79 10.31 59.85 0.62 2.41 16 15 C 0.24 6.13 5.41 -5.19 -0.03 6.10 16 16 C -0.54 -14.17 9.38 -34.44 -0.32 -14.49 16 17 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.57 13.29 55.43 0.74 -24.84 16 20 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H 0.05 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.10 0.95 8.03 -51.93 -0.42 0.54 16 30 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 0.98 7.48 -51.93 -0.39 0.59 16 33 H 0.41 6.25 8.55 -34.47 -0.29 5.96 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 36 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 37 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 38 H 0.05 1.41 6.91 -51.93 -0.36 1.05 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -31.86 338.87 -9.57 -41.43 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.45 Total: 3.09 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.92 Total: -10.45 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.28 Total: -64.39 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -1.91 Total: -45.49 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 55.65 SS G_CDS: -0.66 Total: 54.99 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.86 -9.57 -41.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451815463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.438 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds