Wall clock time and date at job start Mon Mar 30 2020 20:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53008 * 109.46744 * 2 1 4 4 H 1.09002 * 115.56087 * 29.31078 * 3 2 1 5 5 C 1.53074 * 117.49465 * 243.59790 * 3 2 1 6 6 C 1.52997 * 59.98442 * 252.51697 * 5 3 2 7 7 H 1.09000 * 117.49885 * 107.49681 * 6 5 3 8 8 C 1.52994 * 117.49830 * 252.50063 * 6 5 3 9 9 N 1.46502 * 109.47294 * 243.74625 * 8 6 5 10 10 S 1.65598 * 120.00204 * 164.99989 * 9 8 6 11 11 O 1.42100 * 106.39953 * 311.45568 * 10 9 8 12 12 O 1.42105 * 106.40088 * 178.54259 * 10 9 8 13 13 N 1.65593 * 107.21993 * 65.00171 * 10 9 8 14 14 C 1.46502 * 119.99605 * 269.99784 * 13 10 9 15 15 C 1.46499 * 120.00395 * 90.00069 * 13 10 9 16 16 C 1.50701 * 109.46992 * 264.99836 * 15 13 10 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 H 1.09009 * 109.46766 * 60.00445 * 1 2 3 25 25 H 1.09003 * 109.47182 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47471 * 300.00099 * 1 2 3 27 27 H 1.09000 * 109.47471 * 239.99901 * 2 1 3 28 28 H 1.09000 * 109.46904 * 119.99374 * 2 1 3 29 29 H 1.08993 * 117.51212 * 145.03402 * 5 3 2 30 30 H 1.09001 * 117.50908 * 359.97438 * 5 3 2 31 31 H 1.09005 * 109.47747 * 123.74437 * 8 6 5 32 32 H 1.08998 * 109.47431 * 3.74759 * 8 6 5 33 33 H 0.97004 * 119.99921 * 344.99651 * 9 8 6 34 34 H 1.09000 * 109.47587 * 270.00096 * 14 13 10 35 35 H 1.08997 * 109.47205 * 30.00247 * 14 13 10 36 36 H 1.09003 * 109.46728 * 150.00070 * 14 13 10 37 37 H 1.09002 * 109.47391 * 144.99826 * 15 13 10 38 38 H 1.09001 * 109.46813 * 24.99883 * 15 13 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8447 1.9077 -1.2162 6 6 3.5501 1.6580 0.1183 7 1 4.1802 0.7721 0.1966 8 6 4.0298 2.8805 0.9033 9 7 5.4910 2.8526 1.0056 10 16 6.3149 4.2129 1.4670 11 8 5.8084 5.2772 0.6733 12 8 7.6901 3.8564 1.5027 13 7 5.8773 4.5450 3.0291 14 6 4.7285 5.4132 3.2991 15 6 6.6387 3.9707 4.1411 16 6 5.9716 2.7011 4.6040 17 1 5.0708 2.3563 4.1182 18 6 6.5119 1.9792 5.6471 19 7 7.6092 2.3988 6.2383 20 14 5.6854 0.4052 6.2204 21 1 5.6384 -0.5663 5.0982 22 1 6.4572 -0.1769 7.3477 23 1 4.3033 0.7078 6.6715 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 2.7225 2.9427 -1.5350 30 1 3.0111 1.1858 -2.0158 31 1 3.5952 2.8641 1.9028 32 1 3.7191 3.7888 0.3870 33 1 5.9759 2.0371 0.8032 34 1 5.0631 6.4484 3.3654 35 1 4.0026 5.3169 2.4917 36 1 4.2651 5.1201 4.2412 37 1 6.6734 4.6840 4.9645 38 1 7.6532 3.7483 3.8101 39 1 7.9891 1.8911 6.9724 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451815463.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:49 Heat of formation + Delta-G solvation = -90.751743 kcal Electronic energy + Delta-G solvation = -20238.042218 eV Core-core repulsion = 17113.818104 eV Total energy + Delta-G solvation = -3124.224114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.33159 -38.28652 -37.21422 -36.90042 -35.61823 -34.48137 -32.70130 -29.66324 -27.24151 -26.74138 -24.59725 -24.19475 -21.98898 -21.37334 -20.21493 -18.78439 -18.55080 -18.12460 -17.51021 -16.75527 -16.20294 -15.56562 -15.53908 -15.13969 -15.04788 -14.85523 -14.51500 -14.01140 -13.94685 -13.40363 -13.35086 -13.24281 -13.12033 -13.00674 -12.90812 -12.89929 -12.51284 -12.36304 -12.28394 -12.08270 -11.94490 -11.82668 -11.73127 -11.06027 -10.68650 -10.57452 -10.24093 -9.77514 -8.16609 -6.30856 -0.26690 1.43831 1.45601 1.53291 2.00044 2.43193 2.60591 2.88106 3.14930 3.42101 3.67757 3.93335 3.95606 4.08343 4.27652 4.31997 4.40955 4.55595 4.62683 4.70436 4.80450 4.82503 4.89172 5.00039 5.04191 5.07135 5.19321 5.27072 5.27475 5.29450 5.35613 5.48422 5.54317 5.73718 5.87052 6.09997 6.18531 6.81478 7.39465 8.91437 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.006850 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.669854 B = 4086.537591 C = 5677.854961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.138 4.138 4 H 0.111 0.889 5 C -0.167 4.167 6 C -0.169 4.169 7 H 0.110 0.890 8 C 0.148 3.852 9 N -1.115 6.115 10 S 2.805 3.195 11 O -1.007 7.007 12 O -1.019 7.019 13 N -1.003 6.003 14 C 0.096 3.904 15 C 0.258 3.742 16 C -0.543 4.543 17 H 0.073 0.927 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.104 0.896 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.420 0.580 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.018 0.982 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.023 -2.777 -11.805 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.157 4.157 4 H 0.129 0.871 5 C -0.204 4.204 6 C -0.189 4.189 7 H 0.128 0.872 8 C 0.023 3.977 9 N -0.877 5.877 10 S 2.813 3.187 11 O -0.990 6.990 12 O -1.004 7.004 13 N -0.845 5.845 14 C -0.050 4.050 15 C 0.134 3.866 16 C -0.582 4.582 17 H 0.092 0.908 18 C -0.191 4.191 19 N -0.570 5.570 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.189 1.189 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.400 -2.100 -12.146 18.208 hybrid contribution 0.184 -1.201 0.878 1.499 sum -13.217 -3.301 -11.268 17.679 Atomic orbital electron populations 1.21730 0.94617 1.02009 1.02088 1.21150 0.96693 0.93468 1.02017 1.22593 0.92042 0.98943 1.02086 0.87087 1.23347 1.02832 1.03003 0.91179 1.22498 0.96328 0.99066 1.00991 0.87200 1.20927 0.78109 0.98497 1.00196 1.55650 1.16455 1.30511 1.85088 1.00967 0.72105 0.73181 0.72489 1.93521 1.81772 1.55134 1.68582 1.93532 1.34807 1.84590 1.87444 1.57493 1.42368 1.61070 1.23536 1.21504 0.87158 0.93222 1.03105 1.18767 0.90516 0.93054 0.84230 1.21836 1.11338 1.08072 1.16979 0.90842 1.25858 0.95414 1.01294 0.96544 1.70066 1.21664 1.40987 1.24244 0.85546 0.78660 0.79244 0.77844 1.19256 1.21370 1.18944 0.92181 0.92176 0.92725 0.91362 0.92191 0.88288 0.87725 0.91467 0.90262 0.74520 0.92549 0.90328 0.90611 0.96096 0.96404 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.87 71.98 0.71 -1.31 16 2 C -0.10 -1.55 6.22 30.60 0.19 -1.36 16 3 C -0.14 -2.47 5.46 -10.77 -0.06 -2.52 16 4 H 0.11 1.89 8.08 -2.39 -0.02 1.87 16 5 C -0.17 -2.95 9.83 30.62 0.30 -2.65 16 6 C -0.17 -3.65 5.62 -10.80 -0.06 -3.71 16 7 H 0.11 2.39 7.98 -2.39 -0.02 2.38 16 8 C 0.15 3.88 6.53 86.38 0.56 4.45 16 9 N -1.11 -35.41 6.05 -187.49 -1.14 -36.54 16 10 S 2.80 111.00 6.10 -56.49 -0.34 110.65 16 11 O -1.01 -40.23 16.68 -128.00 -2.14 -42.37 16 12 O -1.02 -48.73 16.69 -128.00 -2.14 -50.87 16 13 N -1.00 -41.39 3.23 -543.22 -1.75 -43.15 16 14 C 0.10 3.14 10.31 127.77 1.32 4.46 16 15 C 0.26 13.18 5.41 85.63 0.46 13.65 16 16 C -0.54 -28.42 9.38 25.60 0.24 -28.18 16 17 H 0.07 3.60 7.81 -2.91 -0.02 3.57 16 18 C 0.01 0.44 5.46 84.66 0.46 0.91 16 19 N -0.93 -54.23 13.29 21.45 0.28 -53.94 16 20 Si 0.96 41.97 29.54 68.60 2.03 43.99 16 21 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.01 7.88 -2.39 -0.02 0.99 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.70 8.03 -2.39 -0.02 1.69 16 30 H 0.10 1.62 8.03 -2.39 -0.02 1.60 16 31 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 32 H 0.08 1.96 7.48 -2.39 -0.02 1.94 16 33 H 0.42 12.37 8.55 -96.74 -0.83 11.54 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.14 7.79 -2.39 -0.02 2.12 16 36 H 0.08 2.46 8.07 -2.39 -0.02 2.44 16 37 H 0.02 1.12 8.11 -2.39 -0.02 1.10 16 38 H 0.02 1.03 6.91 -2.39 -0.02 1.01 16 39 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -67.38 338.87 -0.87 -68.25 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.20 Total: 20.25 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 4.13 Total: -16.27 kcal Atomic # 7 Polarization: -131.03 SS G_CDS: -2.60 Total: -133.64 kcal Atomic # 8 Polarization: -88.96 SS G_CDS: -4.27 Total: -93.23 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 16 Polarization: 111.00 SS G_CDS: -0.34 Total: 110.65 kcal Total: -67.38 -0.87 -68.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451815463.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.506 kcal (2) G-P(sol) polarization free energy of solvation -67.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds