Wall clock time and date at job start Mon Mar 30 2020 20:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46845 * 2 1 4 4 C 1.31001 * 119.99567 * 127.70294 * 3 2 1 5 5 C 1.50700 * 120.00108 * 7.29778 * 4 3 2 6 6 C 1.53005 * 109.46919 * 126.65399 * 5 4 3 7 7 S 1.81397 * 109.46948 * 179.97438 * 6 5 4 8 8 C 1.81401 * 103.00047 * 180.02562 * 7 6 5 9 9 C 1.50691 * 109.47365 * 180.02562 * 8 7 6 10 10 C 1.38637 * 119.75046 * 269.72859 * 9 8 7 11 11 C 1.37614 * 120.25235 * 179.71820 * 10 9 8 12 12 C 1.40718 * 119.74356 * 0.57382 * 11 10 9 13 13 C 1.41394 * 120.24317 * 179.68092 * 12 11 10 14 14 H 1.08008 * 119.99685 * 209.20510 * 13 12 11 15 15 C 1.39942 * 120.00152 * 29.20605 * 13 12 11 16 16 N 1.30816 * 120.00104 * 10.35859 * 15 13 12 17 17 Si 1.86799 * 119.99985 * 190.36082 * 15 13 12 18 18 H 1.48506 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47335 * 119.99555 * 17 15 13 20 20 H 1.48502 * 109.47276 * 239.99837 * 17 15 13 21 21 C 1.40718 * 119.50904 * 359.70202 * 12 11 10 22 22 C 1.37617 * 119.74799 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47036 * 60.00369 * 1 2 3 24 24 H 1.09001 * 109.46653 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47429 * 300.00053 * 1 2 3 26 26 H 1.08997 * 109.46690 * 239.99861 * 2 1 3 27 27 H 1.08998 * 109.46851 * 120.00387 * 2 1 3 28 28 H 1.07992 * 120.00114 * 307.42191 * 3 2 1 29 29 H 1.08002 * 119.99395 * 187.30141 * 4 3 2 30 30 H 1.09002 * 109.47050 * 246.65069 * 5 4 3 31 31 H 1.08994 * 109.46929 * 6.65842 * 5 4 3 32 32 H 1.08997 * 109.47286 * 300.00363 * 6 5 4 33 33 H 1.09001 * 109.46789 * 60.00098 * 6 5 4 34 34 H 1.09007 * 109.46892 * 300.00415 * 8 7 6 35 35 H 1.09002 * 109.46858 * 60.00181 * 8 7 6 36 36 H 1.08003 * 119.87406 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.12966 * 180.27551 * 11 10 9 38 38 H 0.97009 * 120.00107 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.12176 * 179.97438 * 21 12 11 40 40 H 1.07995 * 119.87726 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9048 1.8070 0.8976 5 6 3.5298 0.7965 1.8246 6 6 5.0537 0.9135 1.7537 7 16 5.8060 -0.3023 2.8701 8 6 7.5833 -0.0132 2.6503 9 6 8.3589 -0.9631 3.5261 10 6 8.6971 -0.5881 4.8172 11 6 9.4001 -1.4497 5.6278 12 6 9.7863 -2.7109 5.1375 13 6 10.5148 -3.6018 5.9590 14 1 11.1982 -4.3101 5.5142 15 6 10.3502 -3.5658 7.3482 16 7 9.3841 -2.8581 7.8744 17 14 11.5103 -4.5285 8.4514 18 1 12.5095 -5.2422 7.6160 19 1 12.2093 -3.5941 9.3699 20 1 10.7342 -5.5149 9.2450 21 6 9.4425 -3.0786 3.8234 22 6 8.7333 -2.2036 3.0329 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6765 2.1193 -0.7427 29 1 3.1760 2.8497 0.9733 30 1 3.1980 0.9860 2.8455 31 1 3.2281 -0.2070 1.5247 32 1 5.3855 0.7242 0.7329 33 1 5.3554 1.9171 2.0536 34 1 7.8522 -0.1795 1.6071 35 1 7.8214 1.0137 2.9276 36 1 8.4041 0.3825 5.1896 37 1 9.6587 -1.1572 6.6348 38 1 9.2702 -2.8328 8.8374 39 1 9.7342 -4.0440 3.4369 40 1 8.4680 -2.4838 2.0242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000467299258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:57 Heat of formation + Delta-G solvation = 7.050385 kcal Electronic energy + Delta-G solvation = -17466.806340 eV Core-core repulsion = 14757.672508 eV Total energy + Delta-G solvation = -2709.133832 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.64329 -37.10373 -33.97311 -32.89179 -31.21787 -29.50120 -29.33791 -27.53580 -24.32681 -23.65357 -23.07802 -21.03020 -20.02815 -18.48837 -17.32387 -16.23174 -15.70577 -15.33293 -14.80860 -14.52545 -14.33089 -13.99849 -13.85052 -13.62218 -13.26134 -12.70607 -12.52378 -12.28880 -12.15928 -11.99813 -11.95549 -11.53911 -11.31996 -11.16632 -11.09119 -11.06382 -10.54188 -10.51212 -10.34643 -9.69799 -9.50539 -9.38949 -9.21307 -9.11677 -7.51074 -7.26294 -7.19199 -6.74600 -4.40499 1.80640 2.13000 2.78417 3.03498 3.05187 3.06801 3.11680 3.40091 3.91773 4.57636 4.64721 4.86127 4.94637 5.03117 5.08247 5.16418 5.40123 5.48773 5.56459 5.58117 5.62253 5.69041 5.78233 5.84627 5.91109 5.98433 6.04247 6.14024 6.31267 6.36141 6.50061 6.68698 6.91403 7.04801 7.22153 7.31796 7.58047 7.78439 8.01956 8.04628 8.25398 8.60315 8.85353 8.91971 10.18886 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036049 B = 0.002690 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.529437 B =10406.959548 C =10571.043752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.110 4.110 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.084 4.084 6 C -0.089 4.089 7 S -0.279 6.279 8 C -0.002 4.002 9 C -0.204 4.204 10 C -0.082 4.082 11 C -0.160 4.160 12 C 0.115 3.885 13 C -0.458 4.458 14 H 0.079 0.921 15 C 0.072 3.928 16 N -0.796 5.796 17 Si 0.912 3.088 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.274 1.274 21 C -0.223 4.223 22 C -0.071 4.071 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.280 0.720 39 H 0.094 0.906 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 7.087 -10.247 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.147 4.147 3 C -0.178 4.178 4 C -0.172 4.172 5 C -0.121 4.121 6 C -0.237 4.237 7 S -0.048 6.048 8 C -0.148 4.148 9 C -0.208 4.208 10 C -0.102 4.102 11 C -0.179 4.179 12 C 0.112 3.888 13 C -0.488 4.488 14 H 0.097 0.903 15 C -0.146 4.146 16 N -0.422 5.422 17 Si 0.736 3.264 18 H -0.184 1.184 19 H -0.197 1.197 20 H -0.199 1.199 21 C -0.243 4.243 22 C -0.091 4.091 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.112 0.888 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.021 6.442 -9.396 15.851 hybrid contribution 0.986 0.587 -0.232 1.171 sum -10.035 7.028 -9.628 15.582 Atomic orbital electron populations 1.21691 0.95216 1.01640 1.01748 1.20844 0.96021 0.94756 1.03047 1.22799 0.98786 0.97604 0.98628 1.22790 0.97936 0.99143 0.97307 1.20579 0.92362 0.99321 0.99879 1.23248 0.97944 1.01075 1.01459 1.87445 1.07687 1.50682 1.58972 1.21983 0.90599 1.00990 1.01248 1.18438 1.09683 0.96812 0.95875 1.20547 0.98579 0.98110 0.92988 1.21345 1.03155 0.93579 0.99856 1.17700 0.88824 0.91337 0.90946 1.19669 1.21719 1.16530 0.90874 0.90334 1.25931 0.94673 0.94929 0.99030 1.69803 1.25533 1.33284 1.13536 0.86202 0.80647 0.79747 0.79766 1.18442 1.19747 1.19935 1.21019 1.07335 0.99040 0.96863 1.20374 0.97944 0.93279 0.97506 0.92894 0.92558 0.92677 0.91302 0.90267 0.87443 0.87326 0.90419 0.89729 0.90813 0.90811 0.91312 0.91240 0.89280 0.86120 0.90877 0.88759 0.89274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.90 37.16 0.37 -0.74 16 2 C -0.11 -0.96 6.02 -27.88 -0.17 -1.13 16 3 C -0.16 -1.44 9.51 -36.03 -0.34 -1.79 16 4 C -0.15 -1.49 9.51 -36.03 -0.34 -1.83 16 5 C -0.08 -0.96 5.32 -27.88 -0.15 -1.11 16 6 C -0.09 -1.15 5.92 37.16 0.22 -0.93 16 7 S -0.28 -4.88 21.72 -107.50 -2.33 -7.21 16 8 C 0.00 -0.03 6.06 36.00 0.22 0.19 16 9 C -0.20 -4.48 5.16 -104.33 -0.54 -5.01 16 10 C -0.08 -1.93 9.67 -39.66 -0.38 -2.31 16 11 C -0.16 -4.15 8.66 -38.87 -0.34 -4.49 16 12 C 0.12 3.06 5.55 -106.82 -0.59 2.47 16 13 C -0.46 -12.08 9.06 -37.74 -0.34 -12.42 16 14 H 0.08 1.99 7.87 -52.48 -0.41 1.57 16 15 C 0.07 1.79 5.26 -17.35 -0.09 1.70 16 16 N -0.80 -20.65 10.85 55.55 0.60 -20.04 16 17 Si 0.91 18.61 29.57 -169.99 -5.03 13.59 16 18 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.22 -5.47 9.80 -38.87 -0.38 -5.85 16 22 C -0.07 -1.60 9.67 -39.66 -0.38 -1.98 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 0.76 5.30 -51.93 -0.28 0.48 16 28 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.11 0.96 8.06 -52.49 -0.42 0.53 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.99 5.28 -51.93 -0.27 0.72 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 34 H 0.07 1.13 8.08 -51.92 -0.42 0.71 16 35 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 36 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 37 H 0.12 3.23 6.24 -52.49 -0.33 2.91 16 38 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 39 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 344.95 15.07 5.20 5.20 Total: -1.00 -27.09 344.95 -11.14 -38.23 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -6.34 Total: 5.46 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: -3.24 Total: -35.22 kcal Atomic # 7 Polarization: -20.65 SS G_CDS: 0.60 Total: -20.04 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.59 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.33 Total: -7.21 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.09 -11.14 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000467299258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.284 kcal (2) G-P(sol) polarization free energy of solvation -27.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds