Wall clock time and date at job start Mon Mar 30 2020 20:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50697 * 109.46845 * 2 1 4 4 C 1.31001 * 119.99567 * 127.70294 * 3 2 1 5 5 C 1.50700 * 120.00108 * 7.29778 * 4 3 2 6 6 C 1.53005 * 109.46919 * 126.65399 * 5 4 3 7 7 S 1.81397 * 109.46948 * 179.97438 * 6 5 4 8 8 C 1.81401 * 103.00047 * 180.02562 * 7 6 5 9 9 C 1.50691 * 109.47365 * 180.02562 * 8 7 6 10 10 C 1.38637 * 119.75046 * 269.72859 * 9 8 7 11 11 C 1.37614 * 120.25235 * 179.71820 * 10 9 8 12 12 C 1.40718 * 119.74356 * 0.57382 * 11 10 9 13 13 C 1.41394 * 120.24317 * 179.68092 * 12 11 10 14 14 H 1.08008 * 119.99685 * 209.20510 * 13 12 11 15 15 C 1.39942 * 120.00152 * 29.20605 * 13 12 11 16 16 N 1.30816 * 120.00104 * 10.35859 * 15 13 12 17 17 Si 1.86799 * 119.99985 * 190.36082 * 15 13 12 18 18 H 1.48506 * 109.47091 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47335 * 119.99555 * 17 15 13 20 20 H 1.48502 * 109.47276 * 239.99837 * 17 15 13 21 21 C 1.40718 * 119.50904 * 359.70202 * 12 11 10 22 22 C 1.37617 * 119.74799 * 359.97438 * 21 12 11 23 23 H 1.08996 * 109.47036 * 60.00369 * 1 2 3 24 24 H 1.09001 * 109.46653 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47429 * 300.00053 * 1 2 3 26 26 H 1.08997 * 109.46690 * 239.99861 * 2 1 3 27 27 H 1.08998 * 109.46851 * 120.00387 * 2 1 3 28 28 H 1.07992 * 120.00114 * 307.42191 * 3 2 1 29 29 H 1.08002 * 119.99395 * 187.30141 * 4 3 2 30 30 H 1.09002 * 109.47050 * 246.65069 * 5 4 3 31 31 H 1.08994 * 109.46929 * 6.65842 * 5 4 3 32 32 H 1.08997 * 109.47286 * 300.00363 * 6 5 4 33 33 H 1.09001 * 109.46789 * 60.00098 * 6 5 4 34 34 H 1.09007 * 109.46892 * 300.00415 * 8 7 6 35 35 H 1.09002 * 109.46858 * 60.00181 * 8 7 6 36 36 H 1.08003 * 119.87406 * 359.97438 * 10 9 8 37 37 H 1.08000 * 120.12966 * 180.27551 * 11 10 9 38 38 H 0.97009 * 120.00107 * 180.02562 * 16 15 13 39 39 H 1.08000 * 120.12176 * 179.97438 * 21 12 11 40 40 H 1.07995 * 119.87726 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9048 1.8070 0.8976 5 6 3.5298 0.7965 1.8246 6 6 5.0537 0.9135 1.7537 7 16 5.8060 -0.3023 2.8701 8 6 7.5833 -0.0132 2.6503 9 6 8.3589 -0.9631 3.5261 10 6 8.6971 -0.5881 4.8172 11 6 9.4001 -1.4497 5.6278 12 6 9.7863 -2.7109 5.1375 13 6 10.5148 -3.6018 5.9590 14 1 11.1982 -4.3101 5.5142 15 6 10.3502 -3.5658 7.3482 16 7 9.3841 -2.8581 7.8744 17 14 11.5103 -4.5285 8.4514 18 1 12.5095 -5.2422 7.6160 19 1 12.2093 -3.5941 9.3699 20 1 10.7342 -5.5149 9.2450 21 6 9.4425 -3.0786 3.8234 22 6 8.7333 -2.2036 3.0329 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.6765 2.1193 -0.7427 29 1 3.1760 2.8497 0.9733 30 1 3.1980 0.9860 2.8455 31 1 3.2281 -0.2070 1.5247 32 1 5.3855 0.7242 0.7329 33 1 5.3554 1.9171 2.0536 34 1 7.8522 -0.1795 1.6071 35 1 7.8214 1.0137 2.9276 36 1 8.4041 0.3825 5.1896 37 1 9.6587 -1.1572 6.6348 38 1 9.2702 -2.8328 8.8374 39 1 9.7342 -4.0440 3.4369 40 1 8.4680 -2.4838 2.0242 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000467299258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:09:57 Heat of formation + Delta-G solvation = -2.640942 kcal Electronic energy + Delta-G solvation = -17467.226588 eV Core-core repulsion = 14757.672508 eV Total energy + Delta-G solvation = -2709.554079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.49500 -37.86530 -35.82015 -33.69844 -33.00212 -31.22118 -30.28819 -29.28629 -25.91122 -24.62570 -23.94142 -22.91694 -21.83763 -19.23576 -19.23218 -17.41280 -17.09871 -16.75718 -16.03331 -15.74476 -15.66830 -15.56665 -15.35301 -14.52005 -14.42936 -14.26480 -13.87051 -13.70674 -13.54505 -13.31972 -12.95359 -12.86198 -12.81235 -12.70909 -12.44323 -12.16309 -11.99483 -11.80795 -11.48597 -11.33047 -11.26892 -11.05392 -10.75786 -9.86216 -9.39495 -9.13618 -8.60504 -8.58281 -6.37189 0.42748 1.10060 1.16662 1.35912 1.38548 1.53670 1.56723 1.89208 2.21263 2.78366 3.72026 3.82453 4.05322 4.08401 4.13598 4.17135 4.20443 4.34715 4.49954 4.50809 4.58336 4.60426 4.67737 4.69458 4.78175 4.95151 5.02595 5.10147 5.14996 5.17801 5.25397 5.33057 5.36698 5.42496 5.68841 5.77156 5.90796 5.96640 6.08841 6.16337 6.35831 6.67950 6.92469 6.99877 8.35908 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036049 B = 0.002690 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.529437 B =10406.959548 C =10571.043752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 C -0.152 4.152 4 C -0.162 4.162 5 C -0.080 4.080 6 C -0.068 4.068 7 S -0.326 6.326 8 C 0.004 3.996 9 C -0.194 4.194 10 C -0.089 4.089 11 C -0.183 4.183 12 C 0.081 3.919 13 C -0.496 4.496 14 H 0.077 0.923 15 C 0.029 3.971 16 N -0.832 5.832 17 Si 0.987 3.013 18 H -0.257 1.257 19 H -0.264 1.264 20 H -0.267 1.267 21 C -0.238 4.238 22 C -0.075 4.075 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.287 0.713 39 H 0.100 0.900 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.325 8.099 -11.852 18.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C -0.170 4.170 4 C -0.182 4.182 5 C -0.118 4.118 6 C -0.216 4.216 7 S -0.096 6.096 8 C -0.143 4.143 9 C -0.196 4.196 10 C -0.109 4.109 11 C -0.203 4.203 12 C 0.078 3.922 13 C -0.526 4.526 14 H 0.095 0.905 15 C -0.185 4.185 16 N -0.459 5.459 17 Si 0.808 3.192 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.192 1.192 21 C -0.258 4.258 22 C -0.095 4.095 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.142 0.858 29 H 0.139 0.861 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.975 7.451 -11.008 17.892 hybrid contribution 1.087 0.399 0.070 1.160 sum -10.888 7.850 -10.939 17.316 Atomic orbital electron populations 1.21680 0.94324 1.02050 1.02098 1.20890 0.96858 0.94755 1.02663 1.23004 0.97892 0.97831 0.98293 1.22739 0.98784 0.99256 0.97401 1.20524 0.91435 0.99850 1.00020 1.23280 0.98256 0.99661 1.00360 1.87575 1.07576 1.53257 1.61228 1.21907 0.90257 1.00635 1.01475 1.18823 1.08275 0.97036 0.95498 1.20778 0.98051 0.98454 0.93613 1.21307 1.04907 0.94331 0.99717 1.18041 0.90011 0.91931 0.92174 1.19896 1.23023 1.17560 0.92160 0.90519 1.26803 0.95931 0.95767 0.99958 1.69871 1.27026 1.34812 1.14201 0.85085 0.78302 0.78294 0.77555 1.18068 1.18852 1.19194 1.21233 1.07912 0.99956 0.96669 1.20690 0.97055 0.93175 0.98542 0.91875 0.92208 0.92976 0.90909 0.91436 0.85758 0.86063 0.91257 0.90202 0.89624 0.89505 0.89179 0.89637 0.87648 0.87945 0.90258 0.88161 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.90 71.98 0.71 -1.19 16 2 C -0.11 -1.79 6.02 29.85 0.18 -1.61 16 3 C -0.15 -2.32 9.51 25.64 0.24 -2.08 16 4 C -0.16 -2.72 9.51 25.65 0.24 -2.48 16 5 C -0.08 -1.68 5.32 29.85 0.16 -1.52 16 6 C -0.07 -1.56 5.92 71.98 0.43 -1.13 16 7 S -0.33 -10.82 21.72 -56.49 -1.23 -12.05 16 8 C 0.00 0.13 6.06 71.23 0.43 0.56 16 9 C -0.19 -8.26 5.16 -19.68 -0.10 -8.36 16 10 C -0.09 -4.20 9.67 22.22 0.21 -3.99 16 11 C -0.18 -9.86 8.66 22.73 0.20 -9.66 16 12 C 0.08 4.49 5.55 -21.29 -0.12 4.37 16 13 C -0.50 -27.26 9.06 23.46 0.21 -27.05 16 14 H 0.08 4.05 7.87 -2.91 -0.02 4.03 16 15 C 0.03 1.49 5.26 85.26 0.45 1.94 16 16 N -0.83 -44.76 10.85 21.82 0.24 -44.52 16 17 Si 0.99 38.93 29.57 68.60 2.03 40.96 16 18 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 21 C -0.24 -11.91 9.80 22.73 0.22 -11.69 16 22 C -0.07 -3.31 9.67 22.22 0.21 -3.09 16 23 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.21 5.30 -2.39 -0.01 1.20 16 28 H 0.12 1.51 8.06 -2.91 -0.02 1.48 16 29 H 0.12 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.75 5.28 -2.39 -0.01 1.74 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.09 2.64 8.08 -2.39 -0.02 2.62 16 35 H 0.09 2.59 8.08 -2.39 -0.02 2.57 16 36 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.10 5.79 6.24 -2.91 -0.02 5.77 16 38 H 0.29 13.93 8.30 -92.70 -0.77 13.16 16 39 H 0.10 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -59.94 344.95 5.72 -54.23 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.99 Total: 28.36 kcal Atomic # 6 Polarization: -70.65 SS G_CDS: 3.69 Total: -66.97 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.24 Total: -44.52 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Atomic # 16 Polarization: -10.82 SS G_CDS: -1.23 Total: -12.05 kcal Total: -59.94 5.72 -54.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000467299258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.585 kcal (2) G-P(sol) polarization free energy of solvation -59.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds