Wall clock time and date at job start Mon Mar 30 2020 20:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.46941 * 2 1 4 4 C 1.31011 * 119.99853 * 124.99755 * 3 2 1 5 5 C 1.50701 * 119.99995 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.46936 * 124.99987 * 5 4 3 7 7 S 1.81406 * 109.47092 * 180.02562 * 6 5 4 8 8 C 1.81395 * 103.00034 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47184 * 180.02562 * 8 7 6 10 10 C 1.38636 * 119.74593 * 269.73125 * 9 8 7 11 11 C 1.37623 * 120.24521 * 179.71976 * 10 9 8 12 12 C 1.40712 * 119.74377 * 0.57054 * 11 10 9 13 13 C 1.41400 * 120.24363 * 179.68527 * 12 11 10 14 14 H 1.08001 * 120.00225 * 155.30418 * 13 12 11 15 15 C 1.39946 * 119.99839 * 335.30245 * 13 12 11 16 16 N 1.30831 * 120.00014 * 342.23943 * 15 13 12 17 17 Si 1.86794 * 120.00069 * 162.23213 * 15 13 12 18 18 H 1.48508 * 109.46924 * 94.66506 * 17 15 13 19 19 H 1.48501 * 109.47416 * 214.66563 * 17 15 13 20 20 H 1.48502 * 109.47160 * 334.66844 * 17 15 13 21 21 C 1.40718 * 119.51400 * 359.69745 * 12 11 10 22 22 C 1.37614 * 119.74148 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47273 * 300.00131 * 1 2 3 25 25 H 1.09007 * 109.46599 * 60.00415 * 1 2 3 26 26 H 1.08999 * 109.47273 * 239.99869 * 2 1 3 27 27 H 1.09007 * 109.46599 * 119.99585 * 2 1 3 28 28 H 1.07996 * 120.00419 * 304.99371 * 3 2 1 29 29 H 1.07996 * 119.99727 * 359.97438 * 4 3 2 30 30 H 1.08999 * 109.46952 * 5.00086 * 5 4 3 31 31 H 1.08994 * 109.47068 * 245.00012 * 5 4 3 32 32 H 1.08999 * 109.47220 * 60.00263 * 6 5 4 33 33 H 1.09003 * 109.47163 * 300.00042 * 6 5 4 34 34 H 1.08993 * 109.47309 * 59.99797 * 8 7 6 35 35 H 1.08999 * 109.46760 * 299.99591 * 8 7 6 36 36 H 1.07994 * 119.87633 * 359.96685 * 10 9 8 37 37 H 1.08001 * 120.12375 * 180.27241 * 11 10 9 38 38 H 0.96995 * 119.99922 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.12524 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.87435 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8642 1.8215 0.9294 5 6 3.3669 3.2421 0.9291 6 6 3.0717 3.8878 2.2844 7 16 3.6762 5.5982 2.2838 8 6 3.2430 6.1847 3.9447 9 6 3.6867 7.6161 4.1037 10 6 4.9540 7.8931 4.5927 11 6 5.3719 9.1965 4.7365 12 6 4.5030 10.2498 4.3965 13 6 4.9191 11.5928 4.5464 14 1 4.4646 12.3689 3.9485 15 6 5.9199 11.9164 5.4696 16 7 6.2262 11.0755 6.4238 17 14 6.8184 13.5489 5.3392 18 1 6.1639 14.5461 6.2238 19 1 8.2325 13.3703 5.7558 20 1 6.7729 14.0281 3.9344 21 6 3.2169 9.9567 3.9064 22 6 2.8224 8.6459 3.7653 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7067 2.1087 -0.7662 29 1 3.1896 1.1336 1.6958 30 1 2.8656 3.8048 0.1417 31 1 4.4422 3.2469 0.7509 32 1 3.5731 3.3252 3.0718 33 1 1.9964 3.8830 2.4626 34 1 3.7407 5.5647 4.6903 35 1 2.1635 6.1220 4.0820 36 1 5.6172 7.0831 4.8579 37 1 6.3612 9.4100 5.1135 38 1 6.9196 11.2999 7.0639 39 1 2.5418 10.7575 3.6428 40 1 1.8359 8.4185 3.3890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000467299259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:01 Heat of formation + Delta-G solvation = -1.347737 kcal Electronic energy + Delta-G solvation = -17265.057060 eV Core-core repulsion = 14555.559058 eV Total energy + Delta-G solvation = -2709.498002 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.63275 -36.71782 -34.01526 -33.49979 -31.23518 -29.40793 -29.32415 -27.55428 -24.60217 -23.77553 -21.82505 -21.03082 -20.00984 -19.82774 -17.34516 -15.89530 -15.41337 -15.29169 -15.16214 -14.37958 -14.24507 -14.12046 -13.82064 -13.79993 -12.93393 -12.76961 -12.54208 -12.40780 -12.13721 -12.02013 -11.96990 -11.62538 -11.30316 -11.24120 -11.16368 -11.06874 -10.77549 -10.69444 -10.31489 -9.75482 -9.52000 -9.43019 -9.18105 -9.13106 -7.50819 -7.31999 -7.21253 -6.82702 -4.39515 1.81208 2.11616 2.77466 3.02432 3.04029 3.06194 3.10805 3.40115 3.88942 4.52762 4.60138 4.75786 4.90922 5.03025 5.08363 5.13621 5.24028 5.50286 5.55974 5.59510 5.61636 5.63651 5.74638 5.80108 5.82491 5.89010 6.01149 6.16765 6.31773 6.36486 6.49036 6.65108 6.91657 7.01468 7.22716 7.30922 7.56715 7.79629 8.00378 8.05767 8.23910 8.58354 8.83129 8.91593 10.11179 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.056698 B = 0.002425 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.722594 B =11543.150015 C =11653.578804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.162 4.162 4 C -0.150 4.150 5 C -0.073 4.073 6 C -0.089 4.089 7 S -0.284 6.284 8 C 0.000 4.000 9 C -0.210 4.210 10 C -0.078 4.078 11 C -0.168 4.168 12 C 0.116 3.884 13 C -0.456 4.456 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.788 5.788 17 Si 0.909 3.091 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.228 4.228 22 C -0.067 4.067 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.282 0.718 39 H 0.094 0.906 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 -15.351 -7.005 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.180 4.180 4 C -0.170 4.170 5 C -0.111 4.111 6 C -0.238 4.238 7 S -0.052 6.052 8 C -0.146 4.146 9 C -0.214 4.214 10 C -0.099 4.099 11 C -0.187 4.187 12 C 0.113 3.887 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.413 5.413 17 Si 0.733 3.267 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.248 4.248 22 C -0.087 4.087 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.112 0.888 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.731 -14.899 -7.623 17.392 hybrid contribution -0.185 0.052 1.115 1.131 sum -4.916 -14.847 -6.508 16.940 Atomic orbital electron populations 1.21719 0.95210 1.01520 1.02140 1.20635 0.96132 0.94375 1.02138 1.22891 0.98499 0.97262 0.99356 1.22858 0.98531 0.96649 0.98932 1.20406 1.02110 0.92513 0.96117 1.23268 1.03259 0.96731 1.00506 1.87356 1.80748 1.11572 1.25566 1.21959 1.01828 0.98140 0.92709 1.18393 0.97452 0.90429 1.15106 1.20516 0.94295 0.96227 0.98822 1.21288 1.00350 0.91021 1.06053 1.17674 0.89842 0.93436 0.87742 1.19657 1.16753 0.93851 1.18282 0.90245 1.25959 0.95783 0.98995 0.93613 1.69828 1.25352 1.36135 1.09964 0.86292 0.78920 0.81564 0.79954 1.19510 1.19955 1.18323 1.20954 0.96876 0.94578 1.12362 1.20361 0.97047 0.92930 0.98393 0.92699 0.92578 0.92596 0.91279 0.91733 0.87310 0.87404 0.90785 0.90241 0.90736 0.90786 0.91250 0.91346 0.89328 0.86350 0.90735 0.88810 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.89 37.16 0.37 -0.64 16 2 C -0.10 -0.70 6.38 -27.88 -0.18 -0.88 16 3 C -0.16 -1.43 9.12 -36.03 -0.33 -1.76 16 4 C -0.15 -1.44 9.12 -36.03 -0.33 -1.77 16 5 C -0.07 -0.82 5.66 -27.89 -0.16 -0.98 16 6 C -0.09 -1.14 5.92 37.15 0.22 -0.92 16 7 S -0.28 -4.88 21.72 -107.50 -2.33 -7.22 16 8 C 0.00 0.00 6.06 36.01 0.22 0.22 16 9 C -0.21 -4.63 5.16 -104.33 -0.54 -5.17 16 10 C -0.08 -1.85 9.67 -39.66 -0.38 -2.23 16 11 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 12 C 0.12 3.10 5.57 -106.82 -0.60 2.51 16 13 C -0.46 -12.01 9.05 -37.74 -0.34 -12.35 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.08 1.86 5.14 -17.34 -0.09 1.78 16 16 N -0.79 -20.12 10.97 55.55 0.61 -19.51 16 17 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.23 -5.62 9.80 -38.87 -0.38 -6.00 16 22 C -0.07 -1.52 9.67 -39.66 -0.38 -1.91 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 28 H 0.11 0.95 7.84 -52.49 -0.41 0.54 16 29 H 0.11 0.95 7.84 -52.49 -0.41 0.54 16 30 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 33 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 34 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 35 H 0.07 1.15 8.08 -51.92 -0.42 0.73 16 36 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 38 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -26.84 349.49 -11.30 -38.14 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.57 Total: 4.74 kcal Atomic # 6 Polarization: -31.57 SS G_CDS: -3.24 Total: -34.81 kcal Atomic # 7 Polarization: -20.12 SS G_CDS: 0.61 Total: -19.51 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Atomic # 16 Polarization: -4.88 SS G_CDS: -2.33 Total: -7.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.84 -11.30 -38.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000467299259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.796 kcal (2) G-P(sol) polarization free energy of solvation -26.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds