Wall clock time and date at job start Mon Mar 30 2020 20:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50695 * 109.46941 * 2 1 4 4 C 1.31011 * 119.99853 * 124.99755 * 3 2 1 5 5 C 1.50701 * 119.99995 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.46936 * 124.99987 * 5 4 3 7 7 S 1.81406 * 109.47092 * 180.02562 * 6 5 4 8 8 C 1.81395 * 103.00034 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47184 * 180.02562 * 8 7 6 10 10 C 1.38636 * 119.74593 * 269.73125 * 9 8 7 11 11 C 1.37623 * 120.24521 * 179.71976 * 10 9 8 12 12 C 1.40712 * 119.74377 * 0.57054 * 11 10 9 13 13 C 1.41400 * 120.24363 * 179.68527 * 12 11 10 14 14 H 1.08001 * 120.00225 * 155.30418 * 13 12 11 15 15 C 1.39946 * 119.99839 * 335.30245 * 13 12 11 16 16 N 1.30831 * 120.00014 * 342.23943 * 15 13 12 17 17 Si 1.86794 * 120.00069 * 162.23213 * 15 13 12 18 18 H 1.48508 * 109.46924 * 94.66506 * 17 15 13 19 19 H 1.48501 * 109.47416 * 214.66563 * 17 15 13 20 20 H 1.48502 * 109.47160 * 334.66844 * 17 15 13 21 21 C 1.40718 * 119.51400 * 359.69745 * 12 11 10 22 22 C 1.37614 * 119.74148 * 0.02562 * 21 12 11 23 23 H 1.08997 * 109.46858 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47273 * 300.00131 * 1 2 3 25 25 H 1.09007 * 109.46599 * 60.00415 * 1 2 3 26 26 H 1.08999 * 109.47273 * 239.99869 * 2 1 3 27 27 H 1.09007 * 109.46599 * 119.99585 * 2 1 3 28 28 H 1.07996 * 120.00419 * 304.99371 * 3 2 1 29 29 H 1.07996 * 119.99727 * 359.97438 * 4 3 2 30 30 H 1.08999 * 109.46952 * 5.00086 * 5 4 3 31 31 H 1.08994 * 109.47068 * 245.00012 * 5 4 3 32 32 H 1.08999 * 109.47220 * 60.00263 * 6 5 4 33 33 H 1.09003 * 109.47163 * 300.00042 * 6 5 4 34 34 H 1.08993 * 109.47309 * 59.99797 * 8 7 6 35 35 H 1.08999 * 109.46760 * 299.99591 * 8 7 6 36 36 H 1.07994 * 119.87633 * 359.96685 * 10 9 8 37 37 H 1.08001 * 120.12375 * 180.27241 * 11 10 9 38 38 H 0.96995 * 119.99922 * 180.02562 * 16 15 13 39 39 H 1.08001 * 120.12524 * 179.97438 * 21 12 11 40 40 H 1.08001 * 119.87435 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8642 1.8215 0.9294 5 6 3.3669 3.2421 0.9291 6 6 3.0717 3.8878 2.2844 7 16 3.6762 5.5982 2.2838 8 6 3.2430 6.1847 3.9447 9 6 3.6867 7.6161 4.1037 10 6 4.9540 7.8931 4.5927 11 6 5.3719 9.1965 4.7365 12 6 4.5030 10.2498 4.3965 13 6 4.9191 11.5928 4.5464 14 1 4.4646 12.3689 3.9485 15 6 5.9199 11.9164 5.4696 16 7 6.2262 11.0755 6.4238 17 14 6.8184 13.5489 5.3392 18 1 6.1639 14.5461 6.2238 19 1 8.2325 13.3703 5.7558 20 1 6.7729 14.0281 3.9344 21 6 3.2169 9.9567 3.9064 22 6 2.8224 8.6459 3.7653 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7067 2.1087 -0.7662 29 1 3.1896 1.1336 1.6958 30 1 2.8656 3.8048 0.1417 31 1 4.4422 3.2469 0.7509 32 1 3.5731 3.3252 3.0718 33 1 1.9964 3.8830 2.4626 34 1 3.7407 5.5647 4.6903 35 1 2.1635 6.1220 4.0820 36 1 5.6172 7.0831 4.8579 37 1 6.3612 9.4100 5.1135 38 1 6.9196 11.2999 7.0639 39 1 2.5418 10.7575 3.6428 40 1 1.8359 8.4185 3.3890 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000467299259.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:00 Heat of formation + Delta-G solvation = -10.607243 kcal Electronic energy + Delta-G solvation = -17265.458582 eV Core-core repulsion = 14555.559058 eV Total energy + Delta-G solvation = -2709.899524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 276.124 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.48879 -37.44270 -35.85524 -34.25176 -33.01922 -31.21389 -30.17680 -29.29671 -25.95028 -24.99326 -22.93213 -22.62723 -21.76791 -20.54322 -19.25017 -17.34416 -17.04079 -16.22642 -16.10053 -15.92478 -15.65462 -15.63021 -15.04747 -14.81178 -14.37902 -13.88763 -13.86717 -13.74514 -13.57722 -13.37281 -13.08511 -12.85897 -12.72770 -12.63667 -12.44588 -12.12638 -12.11148 -11.84661 -11.60572 -11.50973 -11.30685 -11.02270 -10.77914 -9.90031 -9.39704 -9.19521 -8.67257 -8.58166 -6.35123 0.43370 1.10735 1.16628 1.35499 1.38384 1.51576 1.57671 1.88182 2.19867 2.74569 3.73254 3.81577 4.01379 4.09058 4.13189 4.17519 4.21215 4.44075 4.50190 4.51485 4.52679 4.57352 4.67364 4.70484 4.78995 4.97773 5.02107 5.09971 5.12058 5.13200 5.19503 5.32647 5.37810 5.42053 5.67410 5.79504 5.91469 5.94105 6.07372 6.17040 6.34620 6.66434 6.90620 6.99569 8.29847 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.056698 B = 0.002425 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.722594 B =11543.150015 C =11653.578804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.069 4.069 6 C -0.070 4.070 7 S -0.322 6.322 8 C 0.004 3.996 9 C -0.200 4.200 10 C -0.086 4.086 11 C -0.192 4.192 12 C 0.083 3.917 13 C -0.496 4.496 14 H 0.077 0.923 15 C 0.034 3.966 16 N -0.821 5.821 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.265 1.265 20 H -0.259 1.259 21 C -0.244 4.244 22 C -0.072 4.072 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.289 0.711 39 H 0.099 0.901 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.088 -17.165 -7.562 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.174 4.174 4 C -0.179 4.179 5 C -0.107 4.107 6 C -0.218 4.218 7 S -0.091 6.091 8 C -0.143 4.143 9 C -0.203 4.203 10 C -0.105 4.105 11 C -0.211 4.211 12 C 0.080 3.920 13 C -0.526 4.526 14 H 0.095 0.905 15 C -0.181 4.181 16 N -0.447 5.447 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.183 1.183 21 C -0.264 4.264 22 C -0.091 4.091 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -5.455 -16.705 -8.169 19.379 hybrid contribution -0.082 0.351 1.189 1.242 sum -5.537 -16.354 -6.980 18.623 Atomic orbital electron populations 1.21720 0.94797 1.02195 1.01875 1.20676 0.96449 0.93416 1.02816 1.23072 0.97542 0.98074 0.98715 1.22771 0.99398 0.95734 0.99977 1.20343 1.01908 0.93456 0.94984 1.23319 1.03671 0.92924 1.01899 1.87444 1.81447 1.15878 1.24375 1.21875 1.03057 0.95657 0.93674 1.18775 0.96336 0.92712 1.12496 1.20751 0.95438 0.95711 0.98640 1.21261 0.99952 0.92230 1.07676 1.18019 0.90927 0.94056 0.88985 1.19882 1.18897 0.93980 1.19791 0.90511 1.26805 0.95903 1.02781 0.92624 1.69874 1.26044 1.38141 1.10628 0.85180 0.77787 0.76835 0.79846 1.18534 1.18936 1.18325 1.21170 0.96521 0.95956 1.12768 1.20673 0.98357 0.92250 0.97859 0.91620 0.93168 0.92542 0.90402 0.91268 0.87419 0.86384 0.91317 0.90725 0.89481 0.89773 0.89881 0.89477 0.87690 0.88044 0.89984 0.88258 0.86603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.89 71.98 0.71 -0.97 16 2 C -0.10 -1.17 6.38 29.85 0.19 -0.98 16 3 C -0.16 -2.38 9.12 25.63 0.23 -2.15 16 4 C -0.16 -2.64 9.12 25.64 0.23 -2.41 16 5 C -0.07 -1.39 5.66 29.85 0.17 -1.22 16 6 C -0.07 -1.60 5.92 71.98 0.43 -1.17 16 7 S -0.32 -10.44 21.72 -56.49 -1.23 -11.67 16 8 C 0.00 0.14 6.06 71.24 0.43 0.57 16 9 C -0.20 -8.64 5.16 -19.67 -0.10 -8.74 16 10 C -0.09 -4.06 9.67 22.22 0.21 -3.84 16 11 C -0.19 -10.34 8.70 22.73 0.20 -10.14 16 12 C 0.08 4.60 5.57 -21.29 -0.12 4.48 16 13 C -0.50 -27.22 9.05 23.46 0.21 -27.01 16 14 H 0.08 4.06 7.91 -2.91 -0.02 4.03 16 15 C 0.03 1.75 5.14 85.26 0.44 2.18 16 16 N -0.82 -43.27 10.97 21.83 0.24 -43.03 16 17 Si 0.98 38.43 29.59 68.60 2.03 40.46 16 18 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 21 C -0.24 -12.31 9.80 22.73 0.22 -12.09 16 22 C -0.07 -3.20 9.67 22.22 0.21 -2.99 16 23 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.62 8.14 -2.38 -0.02 0.61 16 26 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.79 7.79 -2.38 -0.02 0.77 16 28 H 0.11 1.66 7.84 -2.91 -0.02 1.64 16 29 H 0.12 1.73 7.84 -2.91 -0.02 1.71 16 30 H 0.07 1.46 7.79 -2.39 -0.02 1.44 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.59 8.08 -2.39 -0.02 2.57 16 35 H 0.09 2.63 8.08 -2.39 -0.02 2.62 16 36 H 0.11 4.51 8.06 -2.91 -0.02 4.48 16 37 H 0.10 5.71 6.18 -2.91 -0.02 5.69 16 38 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 39 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 40 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -59.11 349.49 5.70 -53.41 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.98 Total: 27.28 kcal Atomic # 6 Polarization: -70.13 SS G_CDS: 3.68 Total: -66.45 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.24 Total: -43.03 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Atomic # 16 Polarization: -10.44 SS G_CDS: -1.23 Total: -11.67 kcal Total: -59.11 5.70 -53.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000467299259.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.804 kcal (2) G-P(sol) polarization free energy of solvation -59.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds