Wall clock time and date at job start Mon Mar 30 2020 20:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42892 * 109.46908 * 2 1 4 4 C 1.50705 * 109.46617 * 240.00044 * 2 1 3 5 5 O 1.21272 * 120.00299 * 264.99306 * 4 2 1 6 6 N 1.34779 * 119.99720 * 85.00279 * 4 2 1 7 7 C 1.39465 * 119.99503 * 184.79451 * 6 4 2 8 8 C 1.38608 * 119.57720 * 174.98102 * 7 6 4 9 9 C 1.40809 * 118.79464 * 179.71569 * 8 7 6 10 10 C 1.41543 * 120.99683 * 180.27773 * 9 8 7 11 11 H 1.08005 * 119.99717 * 203.69960 * 10 9 8 12 12 C 1.40027 * 119.99765 * 23.70059 * 10 9 8 13 13 N 1.30737 * 120.00206 * 17.19233 * 12 10 9 14 14 Si 1.86800 * 119.99706 * 197.19978 * 12 10 9 15 15 H 1.48498 * 109.47654 * 59.99824 * 14 12 10 16 16 H 1.48501 * 109.47168 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46963 * 299.99259 * 14 12 10 18 18 C 1.41180 * 118.00818 * 0.54235 * 9 8 7 19 19 C 1.37593 * 119.01065 * 359.73766 * 18 9 8 20 20 N 1.32081 * 121.11370 * 359.97438 * 19 18 9 21 21 C 1.52993 * 109.47133 * 120.00432 * 2 1 3 22 22 C 1.53003 * 117.50243 * 13.62077 * 21 2 1 23 23 C 1.52998 * 117.49804 * 304.99582 * 21 2 1 24 24 H 1.09004 * 109.47048 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46954 * 299.99860 * 1 2 3 26 26 H 1.08993 * 109.47615 * 60.00087 * 1 2 3 27 27 H 0.96702 * 113.99659 * 180.02562 * 3 2 1 28 28 H 0.96996 * 119.99773 * 5.06846 * 6 4 2 29 29 H 1.08000 * 120.59727 * 359.97438 * 8 7 6 30 30 H 0.97005 * 119.99767 * 180.02562 * 13 12 10 31 31 H 1.07992 * 120.49196 * 179.75736 * 18 9 8 32 32 H 1.08001 * 119.44022 * 180.02562 * 19 18 9 33 33 H 1.08997 * 115.55058 * 159.33097 * 21 2 1 34 34 H 1.08997 * 117.49402 * 359.97438 * 22 21 2 35 35 H 1.08994 * 117.49891 * 145.02249 * 22 21 2 36 36 H 1.09004 * 117.50068 * 214.97798 * 23 21 2 37 37 H 1.08995 * 117.50313 * 0.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.3208 -1.8871 -1.1762 6 7 2.1609 -0.0380 -2.3915 7 6 2.5295 -0.7164 -3.5530 8 6 2.5579 -0.0382 -4.7615 9 6 2.9382 -0.7377 -5.9229 10 6 2.9890 -0.0897 -7.1803 11 1 2.9007 -0.6667 -8.0890 12 6 3.1537 1.2993 -7.2460 13 7 3.5916 1.9556 -6.2035 14 14 2.7477 2.2144 -8.8230 15 1 1.3170 2.0064 -9.1618 16 1 3.0054 3.6646 -8.6342 17 1 3.5977 1.6998 -9.9267 18 6 3.2620 -2.1061 -5.7966 19 6 3.1989 -2.6948 -4.5546 20 7 2.8428 -2.0018 -3.4881 21 6 2.0400 -0.7213 1.2491 22 6 1.0320 -1.5510 2.0469 23 6 1.5416 -0.2213 2.6065 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.9703 1.4235 -0.0004 28 1 2.0011 0.9183 -2.4183 29 1 2.2971 1.0086 -4.8107 30 1 3.7053 2.9179 -6.2489 31 1 3.5551 -2.6819 -6.6619 32 1 3.4455 -3.7411 -4.4500 33 1 3.0642 -1.0902 1.1938 34 1 0.0054 -1.5826 1.6820 35 1 1.3929 -2.4661 2.5164 36 1 2.2378 -0.2617 3.4443 37 1 0.8502 0.6212 2.6097 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000553075404.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:20 Heat of formation + Delta-G solvation = -20.959720 kcal Electronic energy + Delta-G solvation = -21201.422334 eV Core-core repulsion = 17944.780678 eV Total energy + Delta-G solvation = -3256.641656 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.29378 -38.56949 -37.16101 -35.65541 -34.30805 -33.64280 -30.71547 -30.46719 -28.51161 -26.01842 -25.29143 -22.50843 -22.34914 -21.92692 -20.29358 -19.41812 -17.90236 -17.68294 -16.76395 -15.70778 -15.41374 -15.25966 -14.76565 -14.23322 -14.07016 -13.90383 -13.41941 -13.35368 -12.87446 -12.61897 -12.56608 -12.28345 -12.06994 -11.71736 -11.46670 -11.29980 -11.23773 -10.91672 -10.64612 -10.45712 -10.29619 -10.24391 -10.16318 -9.74194 -9.35764 -9.15235 -8.03344 -7.72693 -7.06296 -6.83052 -4.63475 2.48554 2.78198 2.99712 3.02301 3.16418 3.34678 3.44057 3.78690 3.83016 4.20766 4.57310 4.64548 4.71320 4.88720 4.98180 5.17166 5.42590 5.53256 5.66139 5.67877 5.73255 5.80395 5.97371 6.02926 6.06151 6.17358 6.56836 6.63719 6.78427 6.92796 7.08047 7.36886 7.38896 7.45340 7.76674 7.92474 8.19862 8.39390 8.67605 8.71937 8.84928 9.66928 10.03729 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.027896 B = 0.004454 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.503462 B = 6285.562039 C = 7005.013335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.150 3.850 3 O -0.549 6.549 4 C 0.475 3.525 5 O -0.471 6.471 6 N -0.651 5.651 7 C 0.335 3.665 8 C -0.243 4.243 9 C 0.144 3.856 10 C -0.456 4.456 11 H 0.082 0.918 12 C 0.079 3.921 13 N -0.786 5.786 14 Si 0.912 3.088 15 H -0.262 1.262 16 H -0.277 1.277 17 H -0.264 1.264 18 C -0.285 4.285 19 C 0.119 3.881 20 N -0.556 5.556 21 C -0.168 4.168 22 C -0.169 4.169 23 C -0.168 4.168 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.383 0.617 28 H 0.412 0.588 29 H 0.128 0.872 30 H 0.283 0.717 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 1.852 10.844 11.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.106 3.894 3 O -0.355 6.355 4 C 0.258 3.742 5 O -0.341 6.341 6 N -0.297 5.297 7 C 0.110 3.890 8 C -0.269 4.269 9 C 0.135 3.865 10 C -0.487 4.487 11 H 0.100 0.900 12 C -0.140 4.140 13 N -0.411 5.411 14 Si 0.736 3.264 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.189 1.189 18 C -0.309 4.309 19 C -0.036 4.036 20 N -0.275 5.275 21 C -0.187 4.187 22 C -0.206 4.206 23 C -0.205 4.205 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.231 0.769 28 H 0.248 0.752 29 H 0.145 0.855 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.603 0.934 11.863 12.759 hybrid contribution 0.588 1.287 -1.634 2.161 sum -4.015 2.221 10.229 11.211 Atomic orbital electron populations 1.21852 0.91000 1.03242 1.03621 1.20904 0.95979 0.81721 0.90771 1.86529 1.27440 1.24694 1.96843 1.21244 0.79682 0.88353 0.84883 1.90785 1.44482 1.15045 1.83790 1.43457 1.67196 1.11983 1.07084 1.18228 0.96306 0.89784 0.84667 1.21550 1.12685 1.01674 0.90971 1.17556 0.85612 0.90503 0.92788 1.19557 1.44055 0.91807 0.93306 0.89967 1.25957 0.91821 0.98072 0.98194 1.69768 1.30466 1.10019 1.30884 0.86309 0.80334 0.78103 0.81690 1.18681 1.20205 1.18851 1.21890 1.14207 0.97336 0.97470 1.21760 0.95907 0.97678 0.88221 1.67217 1.21924 1.06236 1.32165 1.22608 1.00415 1.04240 0.91413 1.23059 0.99367 0.95041 1.03083 1.22927 1.03790 0.98055 0.95709 0.90145 0.90778 0.91175 0.76925 0.75185 0.85473 0.90588 0.87987 0.85915 0.87191 0.88071 0.88672 0.88807 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 7.48 37.16 0.28 -1.46 16 2 C 0.15 2.10 1.15 -91.77 -0.11 1.99 16 3 O -0.55 -6.90 12.22 -35.23 -0.43 -7.33 16 4 C 0.48 8.95 6.65 -10.98 -0.07 8.88 16 5 O -0.47 -10.71 14.49 5.56 0.08 -10.63 16 6 N -0.65 -12.97 5.33 -11.49 -0.06 -13.03 16 7 C 0.33 8.18 7.42 -154.71 -1.15 7.03 16 8 C -0.24 -6.21 8.62 -38.47 -0.33 -6.54 16 9 C 0.14 3.79 5.60 -106.55 -0.60 3.19 16 10 C -0.46 -11.72 9.12 -37.65 -0.34 -12.06 16 11 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 12 C 0.08 1.90 5.19 -17.35 -0.09 1.81 16 13 N -0.79 -19.29 10.94 55.55 0.61 -18.68 16 14 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 15 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 16 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 17 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 18 C -0.29 -7.03 9.90 -38.70 -0.38 -7.41 16 19 C 0.12 2.87 11.15 -17.68 -0.20 2.67 16 20 N -0.56 -14.25 7.85 -12.52 -0.10 -14.35 16 21 C -0.17 -2.14 4.73 -90.62 -0.43 -2.57 16 22 C -0.17 -1.87 9.65 -26.73 -0.26 -2.13 16 23 C -0.17 -1.69 9.85 -26.73 -0.26 -1.95 16 24 H 0.08 0.99 6.74 -51.93 -0.35 0.64 16 25 H 0.07 0.77 6.96 -51.93 -0.36 0.41 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.38 3.91 9.04 45.56 0.41 4.32 16 28 H 0.41 7.16 8.06 -40.82 -0.33 6.83 16 29 H 0.13 3.23 6.20 -52.49 -0.33 2.90 16 30 H 0.28 6.29 8.29 -40.82 -0.34 5.96 16 31 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.11 1.53 8.09 -51.93 -0.42 1.11 16 34 H 0.10 1.06 5.89 -51.93 -0.31 0.75 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.94 7.29 -51.93 -0.38 0.56 16 LS Contribution 313.26 15.07 4.72 4.72 Total: -1.00 -30.88 313.26 -7.87 -38.75 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -3.72 Total: 16.31 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -3.94 Total: -8.55 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.45 Total: -46.06 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -0.35 Total: -17.95 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.88 -7.87 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000553075404.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.793 kcal (2) G-P(sol) polarization free energy of solvation -30.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds