Wall clock time and date at job start Mon Mar 30 2020 20:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50702 * 119.99654 * 2 1 4 4 C 1.52994 * 109.47293 * 240.00366 * 3 2 1 5 5 O 1.42901 * 109.47117 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47329 * 120.00083 * 3 2 1 7 7 C 1.50698 * 109.47393 * 180.02562 * 6 3 2 8 8 O 1.21279 * 119.99677 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99953 * 180.02562 * 7 6 3 10 10 C 1.39469 * 119.99812 * 175.30164 * 9 7 6 11 11 C 1.38600 * 119.57663 * 186.37741 * 10 9 7 12 12 C 1.40817 * 118.79197 * 179.97438 * 11 10 9 13 13 C 1.41542 * 120.99061 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99447 * 201.18144 * 13 12 11 15 15 C 1.40030 * 120.00335 * 21.18801 * 13 12 11 16 16 N 1.30742 * 120.00217 * 12.77617 * 15 13 12 17 17 Si 1.86800 * 119.99967 * 192.78084 * 15 13 12 18 18 H 1.48503 * 109.47006 * 89.99275 * 17 15 13 19 19 H 1.48495 * 109.47198 * 209.99795 * 17 15 13 20 20 H 1.48502 * 109.47312 * 329.99678 * 17 15 13 21 21 C 1.41174 * 118.00807 * 359.97438 * 12 11 10 22 22 C 1.37592 * 119.01305 * 0.02562 * 21 12 11 23 23 N 1.32076 * 121.11246 * 359.74791 * 22 21 12 24 24 H 1.07997 * 120.00482 * 359.97438 * 1 2 3 25 25 H 1.08004 * 119.99441 * 180.02562 * 1 2 3 26 26 H 1.07997 * 120.00482 * 180.02562 * 2 1 3 27 27 H 1.09004 * 109.47682 * 180.02562 * 4 3 2 28 28 H 1.09008 * 109.47016 * 299.99898 * 4 3 2 29 29 H 1.09000 * 109.47559 * 59.99817 * 4 3 2 30 30 H 0.96706 * 114.00071 * 60.00082 * 5 3 2 31 31 H 1.09001 * 109.46965 * 299.99964 * 6 3 2 32 32 H 1.09003 * 109.47048 * 59.99688 * 6 3 2 33 33 H 0.97000 * 119.99905 * 355.30289 * 9 7 6 34 34 H 1.07995 * 120.60432 * 0.02562 * 11 10 9 35 35 H 0.96994 * 119.99941 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.49005 * 179.97438 * 21 12 11 37 37 H 1.08006 * 119.43855 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.9430 1.3863 -1.2492 5 8 1.1348 2.3913 0.0006 6 6 2.9431 1.3863 1.2492 7 6 3.6961 2.6917 1.2496 8 8 3.5444 3.4794 0.3399 9 7 4.5387 2.9834 2.2602 10 6 5.3089 4.1452 2.2127 11 6 6.2673 4.3709 3.1881 12 6 7.0359 5.5491 3.1239 13 6 8.0267 5.8268 4.0958 14 1 8.3633 6.8415 4.2491 15 6 8.5707 4.7859 4.8583 16 7 8.3582 3.5428 4.5136 17 14 9.5999 5.1734 6.3683 18 1 8.7185 5.2537 7.5608 19 1 10.6078 4.1015 6.5688 20 1 10.2915 6.4734 6.1756 21 6 6.7885 6.4449 2.0612 22 6 5.8152 6.1345 1.1395 23 7 5.1188 5.0161 1.2329 24 1 -0.5401 0.9352 0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8501 -0.9352 -0.0004 27 1 3.4883 2.3302 -1.2491 28 1 3.6514 0.5579 -1.2493 29 1 2.3164 1.3286 -2.1392 30 1 0.5437 2.4030 0.7659 31 1 2.3165 1.3285 2.1392 32 1 3.6515 0.5578 1.2492 33 1 4.6095 2.3852 3.0205 34 1 6.4224 3.6559 3.9825 35 1 8.7347 2.8218 5.0420 36 1 7.3543 7.3607 1.9735 37 1 5.6200 6.8151 0.3240 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574125618.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:36 Heat of formation + Delta-G solvation = -46.868079 kcal Electronic energy + Delta-G solvation = -20948.329268 eV Core-core repulsion = 17690.564142 eV Total energy + Delta-G solvation = -3257.765127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37531 -40.02753 -38.59923 -36.10063 -35.40675 -33.94205 -32.50339 -32.13329 -30.61606 -28.66538 -27.90375 -24.27924 -23.79791 -22.81936 -21.17154 -20.54753 -19.43832 -18.54744 -17.63004 -17.38713 -16.90196 -16.55716 -16.19759 -16.02026 -15.70415 -15.45184 -14.92838 -14.56302 -14.35873 -14.21383 -13.80496 -13.19609 -13.16782 -13.09109 -12.87572 -12.70705 -12.62294 -12.44129 -12.05470 -11.95740 -11.88547 -11.41881 -11.14704 -11.11335 -10.65714 -10.31611 -9.93133 -9.53042 -8.81084 -8.58487 -6.57921 0.78650 1.01403 1.34224 1.41458 1.54377 1.57257 1.98127 2.19991 2.24983 2.82617 3.36426 3.63924 3.77385 3.78535 4.06323 4.06848 4.37040 4.44189 4.60452 4.73128 4.76864 4.87426 4.88698 4.92968 4.97802 5.11970 5.16512 5.26814 5.39762 5.51236 5.67872 5.71711 5.85869 5.94345 6.18294 6.51301 6.67444 6.81378 6.84452 6.89423 7.45007 7.89239 8.26602 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.031527 B = 0.003944 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.924543 B = 7096.991060 C = 7715.702915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.188 4.188 3 C 0.175 3.825 4 C -0.149 4.149 5 O -0.563 6.563 6 C -0.152 4.152 7 C 0.489 3.511 8 O -0.501 6.501 9 N -0.657 5.657 10 C 0.333 3.667 11 C -0.267 4.267 12 C 0.109 3.891 13 C -0.481 4.481 14 H 0.082 0.918 15 C 0.037 3.963 16 N -0.811 5.811 17 Si 0.991 3.009 18 H -0.260 1.260 19 H -0.266 1.266 20 H -0.261 1.261 21 C -0.302 4.302 22 C 0.111 3.889 23 N -0.577 5.577 24 H 0.100 0.900 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.380 0.620 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.421 0.579 34 H 0.136 0.864 35 H 0.292 0.708 36 H 0.113 0.887 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.174 -10.851 -0.004 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.206 4.206 3 C 0.134 3.866 4 C -0.206 4.206 5 O -0.370 6.370 6 C -0.192 4.192 7 C 0.276 3.724 8 O -0.373 6.373 9 N -0.305 5.305 10 C 0.107 3.893 11 C -0.293 4.293 12 C 0.101 3.899 13 C -0.511 4.511 14 H 0.100 0.900 15 C -0.180 4.180 16 N -0.437 5.437 17 Si 0.811 3.189 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.184 1.184 21 C -0.326 4.326 22 C -0.043 4.043 23 N -0.298 5.298 24 H 0.118 0.882 25 H 0.137 0.863 26 H 0.153 0.847 27 H 0.074 0.926 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.228 0.772 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.258 0.742 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.627 -10.647 -1.859 14.474 hybrid contribution 1.061 0.161 1.924 2.203 sum -8.566 -10.487 0.065 13.541 Atomic orbital electron populations 1.24036 0.95854 1.03084 0.98278 1.23522 0.96897 0.97859 1.02326 1.19881 0.87882 0.84989 0.93829 1.21917 0.99202 1.03168 0.96280 1.86719 1.50697 1.50123 1.49450 1.22449 1.00630 0.94462 1.01692 1.21487 0.79535 0.89749 0.81609 1.90751 1.61521 1.50056 1.34923 1.43602 1.40846 1.21946 1.24089 1.18537 0.90703 0.87739 0.92336 1.21812 1.00449 1.03843 1.03148 1.18032 0.90383 0.90766 0.90722 1.19908 1.18667 0.95873 1.16683 0.90005 1.26844 0.96645 0.93903 1.00574 1.69764 1.36557 1.00991 1.36396 0.85064 0.77766 0.79325 0.76726 1.18438 1.19004 1.18434 1.22054 1.06489 1.04180 0.99865 1.22176 0.91910 0.92917 0.97294 1.67360 1.31414 1.05220 1.25766 0.88175 0.86282 0.84697 0.92555 0.90007 0.92493 0.77177 0.85973 0.85557 0.74185 0.84652 0.89657 0.86880 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 13.93 67.78 0.94 -1.67 16 2 C -0.19 -3.15 8.77 25.64 0.22 -2.92 16 3 C 0.18 4.18 0.94 -11.54 -0.01 4.17 16 4 C -0.15 -4.17 8.50 71.98 0.61 -3.55 16 5 O -0.56 -15.83 10.84 -131.51 -1.43 -17.26 16 6 C -0.15 -3.46 4.93 29.85 0.15 -3.31 16 7 C 0.49 17.73 7.35 87.66 0.64 18.38 16 8 O -0.50 -22.95 11.22 14.44 0.16 -22.78 16 9 N -0.66 -25.34 5.39 -308.66 -1.66 -27.01 16 10 C 0.33 16.49 7.41 132.75 0.98 17.48 16 11 C -0.27 -13.88 8.66 22.99 0.20 -13.68 16 12 C 0.11 5.91 5.65 -21.11 -0.12 5.79 16 13 C -0.48 -25.06 9.15 23.52 0.22 -24.84 16 14 H 0.08 4.10 7.88 -2.91 -0.02 4.07 16 15 C 0.04 1.76 5.30 85.29 0.45 2.21 16 16 N -0.81 -39.24 10.53 21.84 0.23 -39.01 16 17 Si 0.99 35.66 29.58 68.60 2.03 37.69 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 19 H -0.27 -9.02 7.11 99.48 0.71 -8.32 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 21 C -0.30 -15.37 9.90 22.84 0.23 -15.15 16 22 C 0.11 5.53 11.15 84.50 0.94 6.47 16 23 N -0.58 -30.40 7.86 -193.53 -1.52 -31.92 16 24 H 0.10 1.58 6.41 -2.91 -0.02 1.56 16 25 H 0.12 1.29 8.06 -2.91 -0.02 1.26 16 26 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 27 H 0.06 2.09 5.51 -2.38 -0.01 2.08 16 28 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.38 7.73 8.05 -74.05 -0.60 7.13 16 31 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.42 12.97 8.70 -92.71 -0.81 12.16 16 34 H 0.14 6.94 5.83 -2.91 -0.02 6.92 16 35 H 0.29 12.53 8.29 -92.71 -0.77 11.77 16 36 H 0.11 5.28 8.06 -2.91 -0.02 5.25 16 37 H 0.15 6.31 8.06 -2.91 -0.02 6.28 16 Total: -1.00 -71.29 313.86 2.98 -68.31 By element: Atomic # 1 Polarization: 42.89 SS G_CDS: -0.29 Total: 42.60 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 5.46 Total: -10.62 kcal Atomic # 7 Polarization: -94.98 SS G_CDS: -2.95 Total: -97.93 kcal Atomic # 8 Polarization: -38.78 SS G_CDS: -1.26 Total: -40.04 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -71.29 2.98 -68.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574125618.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.446 kcal (2) G-P(sol) polarization free energy of solvation -71.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds