Wall clock time and date at job start Mon Mar 30 2020 20:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47248 * 2 1 4 4 H 1.09007 * 109.46839 * 55.00094 * 3 2 1 5 5 C 1.47200 * 109.47075 * 295.00340 * 3 2 1 6 6 N 3.43552 * 86.99674 * 319.49354 * 2 1 3 7 7 C 1.50690 * 109.47071 * 175.00008 * 3 2 1 8 8 O 1.21281 * 120.00220 * 21.61763 * 7 3 2 9 9 N 1.34778 * 120.00289 * 201.61559 * 7 3 2 10 10 C 1.46499 * 119.99754 * 5.72500 * 9 7 3 11 11 C 1.50699 * 109.47453 * 84.53199 * 10 9 7 12 12 H 1.08001 * 119.99627 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00418 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00371 * 180.02562 * 13 11 10 15 15 Si 1.86800 * 119.99925 * 359.97438 * 13 11 10 16 16 H 1.48495 * 109.47237 * 89.99983 * 15 13 11 17 17 H 1.48498 * 109.47526 * 210.00708 * 15 13 11 18 18 H 1.48505 * 109.47072 * 330.00152 * 15 13 11 19 19 C 1.46497 * 120.00467 * 185.72107 * 9 7 3 20 20 C 1.50697 * 109.47240 * 90.00197 * 19 9 7 21 21 C 1.34511 * 125.79240 * 89.99751 * 20 19 9 22 22 C 1.41376 * 106.84451 * 180.02562 * 21 20 19 23 23 C 1.34517 * 106.84201 * 0.02562 * 22 21 20 24 24 O 1.34301 * 108.41633 * 359.73979 * 23 22 21 25 25 H 1.09000 * 109.46904 * 59.99221 * 1 2 3 26 26 H 1.09003 * 109.47020 * 300.00262 * 1 2 3 27 27 H 1.08995 * 109.47076 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.46936 * 120.00509 * 2 1 3 29 29 H 1.09002 * 109.46903 * 240.00280 * 2 1 3 30 30 H 1.09003 * 109.47595 * 204.53329 * 10 9 7 31 31 H 1.09008 * 109.47064 * 324.52954 * 10 9 7 32 32 H 0.96998 * 120.00252 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.47324 * 210.00170 * 19 9 7 34 34 H 1.09000 * 109.46998 * 329.99992 * 19 9 7 35 35 H 1.08003 * 126.57506 * 359.97422 * 21 20 19 36 36 H 1.08001 * 126.58303 * 179.97438 * 22 21 20 37 37 H 1.07996 * 125.78979 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6506 2.1006 -1.2578 6 7 1.3501 2.6086 -2.2284 7 6 3.5419 1.4443 0.1238 8 8 4.1769 0.4577 -0.1835 9 7 4.1796 2.5422 0.5760 10 6 3.4085 3.6877 1.0651 11 6 3.0446 3.4680 2.5109 12 1 3.3562 2.5651 3.0149 13 6 2.3130 4.4191 3.1899 14 7 1.9959 4.2276 4.4518 15 14 1.7734 5.9805 2.3180 16 1 0.4443 5.7639 1.6920 17 1 1.6829 7.0903 3.3005 18 1 2.7642 6.3288 1.2680 19 6 5.6438 2.5900 0.5785 20 6 6.1302 3.1553 -0.7310 21 6 6.3505 4.4561 -0.9930 22 6 6.7957 4.5346 -2.3325 23 6 6.8203 3.2770 -2.8093 24 8 6.4214 2.4453 -1.8332 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 4.0072 4.5941 0.9748 31 1 2.4990 3.7928 0.4734 32 1 1.4809 4.8966 4.9294 33 1 5.9852 3.2238 1.3970 34 1 6.0400 1.5830 0.7092 35 1 6.2128 5.2823 -0.3110 36 1 7.0637 5.4321 -2.8702 37 1 7.1156 2.9852 -3.8063 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593444065.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:47 Heat of formation + Delta-G solvation = -12.831756 kcal Electronic energy + Delta-G solvation = -21613.674171 eV Core-core repulsion = 18357.384971 eV Total energy + Delta-G solvation = -3256.289201 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.50383 -41.27321 -38.03994 -37.14558 -35.30158 -34.64166 -33.91420 -32.15225 -29.90165 -29.52603 -26.71757 -24.59139 -23.31898 -22.64419 -21.87824 -20.82678 -19.19805 -18.66070 -18.37384 -18.14356 -17.39533 -16.75477 -16.23943 -15.94035 -15.67862 -15.50113 -14.79946 -14.66600 -14.38487 -14.24063 -13.96236 -13.74363 -13.67941 -13.59781 -13.58058 -13.19412 -13.13675 -12.71449 -12.59005 -12.51432 -12.11796 -12.07941 -11.78802 -11.68728 -11.00596 -10.85123 -10.78492 -9.74411 -9.45652 -8.29231 -6.36554 0.66100 1.18135 1.37244 1.42853 1.47492 1.52732 1.57128 1.65846 2.10573 2.30155 2.32824 2.86172 3.04292 3.42474 3.77490 3.79753 4.09304 4.12115 4.14373 4.32908 4.45896 4.53907 4.57866 4.58825 4.78093 4.84272 4.89853 4.98922 5.12274 5.16158 5.16527 5.38987 5.40149 5.45850 5.59280 6.11212 6.21556 6.27024 6.41451 6.71954 7.00860 7.29753 8.85513 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.008349 C = 0.006028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.417068 B = 3353.044223 C = 4643.927540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 C -0.016 4.016 4 H 0.152 0.848 5 C 0.240 3.760 6 N -0.452 5.452 7 C 0.530 3.470 8 O -0.558 6.558 9 N -0.588 5.588 10 C 0.216 3.784 11 C -0.538 4.538 12 H 0.052 0.948 13 C 0.038 3.962 14 N -0.928 5.928 15 Si 0.915 3.085 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.246 1.246 19 C 0.193 3.807 20 C -0.048 4.048 21 C -0.204 4.204 22 C -0.224 4.224 23 C -0.045 4.045 24 O -0.192 6.192 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.031 0.969 32 H 0.270 0.730 33 H 0.128 0.872 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.172 0.828 37 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.156 -1.775 -9.745 10.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 C -0.040 4.040 4 H 0.169 0.831 5 C -0.078 4.078 6 N -0.129 5.129 7 C 0.317 3.683 8 O -0.437 6.437 9 N -0.318 5.318 10 C 0.095 3.905 11 C -0.577 4.577 12 H 0.071 0.929 13 C -0.163 4.163 14 N -0.567 5.567 15 Si 0.739 3.261 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.169 1.169 19 C 0.070 3.930 20 C -0.099 4.099 21 C -0.224 4.224 22 C -0.243 4.243 23 C -0.113 4.113 24 O -0.088 6.088 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.093 0.907 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.112 0.888 35 H 0.175 0.825 36 H 0.190 0.810 37 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.928 -1.742 -11.210 12.005 hybrid contribution -0.183 1.013 0.490 1.140 sum 3.745 -0.729 -10.720 11.379 Atomic orbital electron populations 1.21842 0.93290 1.03687 1.02118 1.21394 0.97289 0.89894 1.04756 1.19303 0.93457 1.00460 0.90788 0.83100 1.28550 0.92858 0.92538 0.93835 1.81139 1.09562 1.10090 1.12126 1.20153 0.89228 0.82546 0.76415 1.90645 1.68190 1.33606 1.51222 1.48022 1.06327 1.16652 1.60757 1.19714 0.91904 0.85246 0.93684 1.21409 1.35036 1.06158 0.95059 0.92939 1.25477 0.95241 1.00610 0.94997 1.69987 1.39190 1.36745 1.10755 0.86194 0.80200 0.80247 0.79447 1.19246 1.20795 1.16940 1.19843 0.79597 1.03571 0.89969 1.23093 1.05742 0.91385 0.89632 1.21956 1.05815 0.96221 0.98409 1.22165 1.07522 0.99174 0.95447 1.24848 1.03084 0.88875 0.94464 1.84076 1.65480 1.38999 1.20273 0.93585 0.91507 0.89631 0.88814 0.90656 0.93240 0.95143 0.92103 0.85444 0.88773 0.82550 0.81013 0.74837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.72 71.98 0.70 -2.75 16 2 C -0.09 -2.57 4.78 30.60 0.15 -2.42 16 3 C -0.02 -0.53 1.78 -13.35 -0.02 -0.55 16 4 H 0.15 5.17 6.43 -2.38 -0.02 5.16 16 5 C 0.24 8.39 12.69 89.44 1.14 9.52 16 6 N -0.45 -16.94 18.54 20.01 0.37 -16.57 16 7 C 0.53 20.11 6.71 87.65 0.59 20.70 16 8 O -0.56 -22.82 15.70 -3.03 -0.05 -22.86 16 9 N -0.59 -22.30 2.45 -830.52 -2.04 -24.33 16 10 C 0.22 8.73 3.87 85.63 0.33 9.07 16 11 C -0.54 -25.83 9.24 25.60 0.24 -25.60 16 12 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 13 C 0.04 1.89 5.47 84.65 0.46 2.35 16 14 N -0.93 -51.02 13.96 21.45 0.30 -50.72 16 15 Si 0.92 38.19 27.47 68.60 1.88 40.07 16 16 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.25 -9.49 6.54 99.48 0.65 -8.84 16 19 C 0.19 6.51 5.95 85.63 0.51 7.02 16 20 C -0.05 -1.57 6.90 24.83 0.17 -1.40 16 21 C -0.20 -6.03 10.81 22.19 0.24 -5.79 16 22 C -0.22 -5.65 10.91 22.19 0.24 -5.40 16 23 C -0.05 -1.15 12.09 66.97 0.81 -0.34 16 24 O -0.19 -6.39 10.65 -2.50 -0.03 -6.42 16 25 H 0.05 1.08 7.38 -2.39 -0.02 1.07 16 26 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.07 2.06 8.05 -2.39 -0.02 2.04 16 30 H 0.05 1.94 7.09 -2.39 -0.02 1.93 16 31 H 0.03 1.22 5.46 -2.38 -0.01 1.21 16 32 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 33 H 0.13 3.90 8.07 -2.39 -0.02 3.88 16 34 H 0.09 3.20 7.35 -2.39 -0.02 3.18 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.24 3.72 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -62.57 325.25 7.02 -55.55 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 1.02 Total: 20.86 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: 5.55 Total: 4.42 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -1.37 Total: -91.62 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.07 Total: -29.28 kcal Atomic # 14 Polarization: 38.19 SS G_CDS: 1.88 Total: 40.07 kcal Total: -62.57 7.02 -55.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593444065.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.721 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds