Wall clock time and date at job start Mon Mar 30 2020 20:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.09009 * 109.47037 * 54.99978 * 3 2 1 5 5 N 1.46506 * 109.47201 * 295.00424 * 3 2 1 6 6 S 1.65592 * 120.00044 * 114.96907 * 5 3 2 7 7 O 1.42105 * 106.40049 * 179.11137 * 6 5 3 8 8 O 1.42096 * 106.40537 * 312.03003 * 6 5 3 9 9 N 1.65598 * 107.21854 * 65.57438 * 6 5 3 10 10 C 1.46499 * 120.00078 * 264.70201 * 9 6 5 11 11 C 1.46497 * 120.00140 * 84.70398 * 9 6 5 12 12 C 1.50706 * 109.47051 * 94.99790 * 11 9 6 13 13 H 1.07996 * 120.00123 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99911 * 179.97438 * 12 11 9 15 15 N 1.31517 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00085 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46974 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47237 * 120.00089 * 16 14 12 19 19 H 1.48503 * 109.47042 * 240.00380 * 16 14 12 20 20 C 1.52993 * 109.47134 * 175.00091 * 3 2 1 21 21 C 1.53006 * 117.49979 * 254.04592 * 20 3 2 22 22 C 1.53006 * 117.49829 * 185.38971 * 20 3 2 23 23 H 1.09002 * 109.46819 * 300.00183 * 1 2 3 24 24 H 1.08996 * 109.47238 * 60.00063 * 1 2 3 25 25 H 1.09000 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46819 * 239.99817 * 2 1 3 27 27 H 1.09004 * 109.46765 * 120.00364 * 2 1 3 28 28 H 0.97007 * 119.99402 * 294.96989 * 5 3 2 29 29 H 1.09001 * 109.47198 * 94.78998 * 10 9 6 30 30 H 1.08993 * 109.47672 * 214.79372 * 10 9 6 31 31 H 1.09006 * 109.46939 * 334.79462 * 10 9 6 32 32 H 1.09001 * 109.47693 * 214.99694 * 11 9 6 33 33 H 1.09000 * 109.47222 * 335.00498 * 11 9 6 34 34 H 0.96999 * 119.99981 * 179.97438 * 15 14 12 35 35 H 1.08997 * 115.55309 * 39.71929 * 20 3 2 36 36 H 1.09000 * 117.49424 * 0.02562 * 21 20 3 37 37 H 1.08999 * 117.49864 * 145.01763 * 21 20 3 38 38 H 1.09001 * 117.49247 * 214.98059 * 22 20 3 39 39 H 1.08990 * 117.49855 * 359.97325 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2518 6 16 0.5932 3.3701 -1.2269 7 8 0.4397 3.7909 -2.5755 8 8 -0.4973 2.9687 -0.4091 9 7 1.3412 4.6149 -0.4310 10 6 1.1037 4.8169 1.0004 11 6 2.2403 5.5141 -1.1584 12 6 1.4772 6.7347 -1.6045 13 1 0.4276 6.8311 -1.3694 14 6 2.1193 7.7288 -2.3119 15 7 3.3977 7.6116 -2.5978 16 14 1.1736 9.2420 -2.8644 17 1 -0.2390 9.1325 -2.4198 18 1 1.7875 10.4550 -2.2667 19 1 1.2206 9.3418 -4.3453 20 6 3.5648 1.4443 0.1257 21 6 4.1622 1.8559 1.4728 22 6 4.2601 2.7994 0.2715 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0163 1.7857 -2.0952 29 1 1.8877 4.3207 1.5724 30 1 1.1114 5.8838 1.2230 31 1 0.1350 4.3964 1.2709 32 1 3.0589 5.8162 -0.5050 33 1 2.6427 4.9985 -2.0303 34 1 3.8494 8.3108 -3.0958 35 1 4.0841 0.6705 -0.4397 36 1 3.4688 2.1250 2.2696 37 1 5.0746 1.3531 1.7935 38 1 5.2368 2.9169 -0.1978 39 1 3.6312 3.6896 0.2774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594858147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:53 Heat of formation + Delta-G solvation = -62.526182 kcal Electronic energy + Delta-G solvation = -21181.115295 eV Core-core repulsion = 18058.115134 eV Total energy + Delta-G solvation = -3123.000161 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -38.42164 -36.53228 -35.49831 -35.14124 -34.68067 -32.42325 -31.48558 -27.77383 -26.43540 -25.04513 -22.39878 -22.16011 -21.61138 -20.60839 -18.90881 -17.25907 -16.66222 -16.40274 -16.17267 -15.28993 -14.93166 -14.50289 -14.31873 -14.05158 -13.35664 -13.28189 -12.80019 -12.27089 -12.20875 -12.16279 -11.82844 -11.64186 -11.56089 -11.39871 -11.26784 -11.12796 -11.06294 -10.80475 -10.78434 -10.69088 -10.49928 -10.31922 -10.03679 -9.98326 -9.73329 -9.20354 -8.44111 -8.05070 -6.05818 -4.09237 1.28910 3.31553 3.39228 3.43779 3.47935 3.98690 4.21475 4.45879 4.52768 4.94146 5.01705 5.06322 5.10831 5.25236 5.29686 5.33850 5.40679 5.65066 5.69234 5.73317 5.88665 5.94388 5.98981 6.03352 6.10488 6.19130 6.27281 6.36481 6.46142 6.47652 6.56481 7.15856 7.29632 7.44267 7.63326 7.92283 8.21835 8.93590 9.56003 11.02729 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.006411 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.517466 B = 4366.526336 C = 4968.675683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.189 3.811 4 H 0.085 0.915 5 N -1.124 6.124 6 S 2.779 3.221 7 O -0.967 6.967 8 O -0.996 6.996 9 N -0.996 5.996 10 C 0.093 3.907 11 C 0.260 3.740 12 C -0.527 4.527 13 H 0.060 0.940 14 C 0.061 3.939 15 N -0.896 5.896 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.168 4.168 21 C -0.177 4.177 22 C -0.173 4.173 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.412 0.588 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.999 -13.813 7.869 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.081 3.919 4 H 0.103 0.897 5 N -0.881 5.881 6 S 2.786 3.214 7 O -0.951 6.951 8 O -0.979 6.979 9 N -0.839 5.839 10 C -0.054 4.054 11 C 0.138 3.862 12 C -0.566 4.566 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.188 4.188 21 C -0.215 4.215 22 C -0.210 4.210 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.244 0.756 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.173 -13.629 7.582 15.597 hybrid contribution 0.297 0.802 -0.616 1.055 sum 0.471 -12.827 6.965 14.603 Atomic orbital electron populations 1.21769 0.95012 1.00877 1.03195 1.21853 0.96713 0.95869 1.02228 1.20232 0.91782 0.93928 0.85939 0.89743 1.56275 1.66711 1.51163 1.13920 1.02012 0.73496 0.72435 0.73416 1.93643 1.85210 1.80770 1.35458 1.93529 1.50876 1.82796 1.70720 1.57615 1.63891 1.44450 1.17965 1.21385 0.99846 1.03346 0.80836 1.19005 0.88290 0.88036 0.90855 1.21543 0.96728 1.03352 1.34977 0.92147 1.24928 0.94931 0.98562 0.95650 1.69927 1.09176 1.34311 1.40147 0.86468 0.80187 0.82387 0.78560 1.19664 1.21002 1.20822 1.22644 0.95006 0.99981 1.01173 1.22969 1.02664 1.04423 0.91437 1.23119 1.02521 0.94351 1.01001 0.92071 0.92455 0.93202 0.91640 0.91119 0.75566 0.94408 0.90566 0.91333 0.94728 0.94668 0.92791 0.87719 0.88860 0.88985 0.88780 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.11 37.16 0.34 -1.50 16 2 C -0.13 -1.36 5.61 -26.73 -0.15 -1.51 16 3 C 0.19 2.35 2.44 -67.93 -0.17 2.18 16 4 H 0.08 1.09 7.47 -51.92 -0.39 0.70 16 5 N -1.12 -16.56 4.86 -4.89 -0.02 -16.58 16 6 S 2.78 54.12 5.94 -107.50 -0.64 53.49 16 7 O -0.97 -23.24 17.30 -57.17 -0.99 -24.23 16 8 O -1.00 -19.75 14.79 -57.17 -0.85 -20.60 16 9 N -1.00 -20.07 2.59 -123.05 -0.32 -20.39 16 10 C 0.09 1.55 10.51 59.85 0.63 2.18 16 11 C 0.26 6.36 4.40 -5.19 -0.02 6.34 16 12 C -0.53 -14.73 9.38 -34.44 -0.32 -15.06 16 13 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 15 N -0.90 -26.01 13.29 55.43 0.74 -25.28 16 16 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 C -0.17 -1.91 5.30 -90.62 -0.48 -2.39 16 21 C -0.18 -1.86 10.18 -26.69 -0.27 -2.13 16 22 C -0.17 -2.26 10.22 -26.69 -0.27 -2.53 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.80 7.02 -51.93 -0.36 0.43 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.41 5.46 8.96 -34.47 -0.31 5.15 16 29 H 0.04 0.52 7.64 -51.93 -0.40 0.13 16 30 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 31 H 0.07 1.09 6.88 -51.93 -0.36 0.73 16 32 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 33 H 0.04 0.92 7.76 -51.93 -0.40 0.52 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.11 1.68 5.98 -51.93 -0.31 1.36 16 LS Contribution 331.21 15.07 4.99 4.99 Total: -1.00 -32.55 331.21 -9.21 -41.76 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.29 Total: 2.71 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -0.82 Total: -12.77 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.39 Total: -62.25 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.83 Total: -44.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 54.12 SS G_CDS: -0.64 Total: 53.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.55 -9.21 -41.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594858147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.766 kcal (2) G-P(sol) polarization free energy of solvation -32.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds