Wall clock time and date at job start Mon Mar 30 2020 20:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47214 * 2 1 4 4 H 1.09009 * 109.47037 * 54.99978 * 3 2 1 5 5 N 1.46506 * 109.47201 * 295.00424 * 3 2 1 6 6 S 1.65592 * 120.00044 * 114.96907 * 5 3 2 7 7 O 1.42105 * 106.40049 * 179.11137 * 6 5 3 8 8 O 1.42096 * 106.40537 * 312.03003 * 6 5 3 9 9 N 1.65598 * 107.21854 * 65.57438 * 6 5 3 10 10 C 1.46499 * 120.00078 * 264.70201 * 9 6 5 11 11 C 1.46497 * 120.00140 * 84.70398 * 9 6 5 12 12 C 1.50706 * 109.47051 * 94.99790 * 11 9 6 13 13 H 1.07996 * 120.00123 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99911 * 179.97438 * 12 11 9 15 15 N 1.31517 * 120.00095 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00085 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46974 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47237 * 120.00089 * 16 14 12 19 19 H 1.48503 * 109.47042 * 240.00380 * 16 14 12 20 20 C 1.52993 * 109.47134 * 175.00091 * 3 2 1 21 21 C 1.53006 * 117.49979 * 254.04592 * 20 3 2 22 22 C 1.53006 * 117.49829 * 185.38971 * 20 3 2 23 23 H 1.09002 * 109.46819 * 300.00183 * 1 2 3 24 24 H 1.08996 * 109.47238 * 60.00063 * 1 2 3 25 25 H 1.09000 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46819 * 239.99817 * 2 1 3 27 27 H 1.09004 * 109.46765 * 120.00364 * 2 1 3 28 28 H 0.97007 * 119.99402 * 294.96989 * 5 3 2 29 29 H 1.09001 * 109.47198 * 94.78998 * 10 9 6 30 30 H 1.08993 * 109.47672 * 214.79372 * 10 9 6 31 31 H 1.09006 * 109.46939 * 334.79462 * 10 9 6 32 32 H 1.09001 * 109.47693 * 214.99694 * 11 9 6 33 33 H 1.09000 * 109.47222 * 335.00498 * 11 9 6 34 34 H 0.96999 * 119.99981 * 179.97438 * 15 14 12 35 35 H 1.08997 * 115.55309 * 39.71929 * 20 3 2 36 36 H 1.09000 * 117.49424 * 0.02562 * 21 20 3 37 37 H 1.08999 * 117.49864 * 145.01763 * 21 20 3 38 38 H 1.09001 * 117.49247 * 214.98059 * 22 20 3 39 39 H 1.08990 * 117.49855 * 359.97325 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6524 2.0975 -1.2518 6 16 0.5932 3.3701 -1.2269 7 8 0.4397 3.7909 -2.5755 8 8 -0.4973 2.9687 -0.4091 9 7 1.3412 4.6149 -0.4310 10 6 1.1037 4.8169 1.0004 11 6 2.2403 5.5141 -1.1584 12 6 1.4772 6.7347 -1.6045 13 1 0.4276 6.8311 -1.3694 14 6 2.1193 7.7288 -2.3119 15 7 3.3977 7.6116 -2.5978 16 14 1.1736 9.2420 -2.8644 17 1 -0.2390 9.1325 -2.4198 18 1 1.7875 10.4550 -2.2667 19 1 1.2206 9.3418 -4.3453 20 6 3.5648 1.4443 0.1257 21 6 4.1622 1.8559 1.4728 22 6 4.2601 2.7994 0.2715 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.0163 1.7857 -2.0952 29 1 1.8877 4.3207 1.5724 30 1 1.1114 5.8838 1.2230 31 1 0.1350 4.3964 1.2709 32 1 3.0589 5.8162 -0.5050 33 1 2.6427 4.9985 -2.0303 34 1 3.8494 8.3108 -3.0958 35 1 4.0841 0.6705 -0.4397 36 1 3.4688 2.1250 2.2696 37 1 5.0746 1.3531 1.7935 38 1 5.2368 2.9169 -0.1978 39 1 3.6312 3.6896 0.2774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594858147.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:10:52 Heat of formation + Delta-G solvation = -85.224699 kcal Electronic energy + Delta-G solvation = -21182.099577 eV Core-core repulsion = 18058.115134 eV Total energy + Delta-G solvation = -3123.984443 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.129 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.42399 -38.17944 -37.20244 -36.81702 -35.71478 -34.49703 -32.56623 -29.66316 -27.46260 -26.76411 -24.21952 -23.13303 -22.54009 -21.59908 -20.38445 -18.97138 -18.37859 -18.11891 -17.52029 -16.79772 -16.31530 -15.89157 -15.58268 -15.06738 -15.03698 -14.82986 -14.02907 -13.93569 -13.74531 -13.38019 -13.30527 -13.12405 -13.04225 -12.95350 -12.90634 -12.55617 -12.46552 -12.34358 -12.25707 -11.96832 -11.83648 -11.70691 -11.69373 -11.25361 -10.95860 -10.60052 -10.34319 -9.76433 -8.20456 -6.31684 -0.26007 1.37332 1.39978 1.51451 2.04769 2.40179 2.66891 3.05133 3.10556 3.52355 3.60118 4.00815 4.09429 4.10747 4.21793 4.32597 4.38688 4.48172 4.68116 4.72511 4.81884 4.91457 4.97027 5.03160 5.05817 5.15601 5.17866 5.21055 5.32792 5.37519 5.45505 5.50240 5.53515 5.70425 5.88923 6.11305 6.22802 6.76931 7.37066 8.86967 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.023956 B = 0.006411 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.517466 B = 4366.526336 C = 4968.675683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.180 3.820 4 H 0.080 0.920 5 N -1.110 6.110 6 S 2.793 3.207 7 O -1.018 7.018 8 O -1.000 7.000 9 N -1.001 6.001 10 C 0.087 3.913 11 C 0.280 3.720 12 C -0.548 4.548 13 H 0.049 0.951 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.954 3.046 17 H -0.272 1.272 18 H -0.269 1.269 19 H -0.280 1.280 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.202 4.202 23 H 0.050 0.950 24 H 0.032 0.968 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.097 0.903 28 H 0.420 0.580 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.029 0.971 33 H 0.013 0.987 34 H 0.267 0.733 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.090 0.910 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.344 -15.123 9.072 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.099 0.901 5 N -0.871 5.871 6 S 2.801 3.199 7 O -1.002 7.002 8 O -0.984 6.984 9 N -0.843 5.843 10 C -0.058 4.058 11 C 0.157 3.843 12 C -0.588 4.588 13 H 0.067 0.933 14 C -0.187 4.187 15 N -0.563 5.563 16 Si 0.779 3.221 17 H -0.196 1.196 18 H -0.194 1.194 19 H -0.205 1.205 20 C -0.180 4.180 21 C -0.192 4.192 22 C -0.239 4.239 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.255 0.745 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.047 0.953 33 H 0.031 0.969 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.509 -14.943 8.809 17.354 hybrid contribution 0.194 1.123 -0.934 1.474 sum 0.703 -13.820 7.875 15.921 Atomic orbital electron populations 1.21805 0.96278 1.01711 1.01478 1.21845 0.95468 0.94537 1.04154 1.20548 0.92806 0.94915 0.84352 0.90144 1.55871 1.66105 1.49620 1.15540 1.01350 0.73804 0.72703 0.72045 1.93568 1.86289 1.82049 1.38315 1.93518 1.51528 1.82829 1.70495 1.57472 1.63150 1.44491 1.19151 1.21582 1.01552 1.03409 0.79259 1.18498 0.88261 0.87346 0.90222 1.21892 0.96538 1.04936 1.35400 0.93250 1.25713 0.95863 1.01394 0.95730 1.70009 1.10298 1.35346 1.40654 0.85568 0.78930 0.79426 0.78144 1.19612 1.19418 1.20527 1.22656 0.93982 0.99112 1.02300 1.23077 1.03316 1.02139 0.90674 1.23045 1.02349 0.94419 1.04118 0.93049 0.94888 0.91178 0.90333 0.88476 0.74546 0.91296 0.91395 0.90330 0.95335 0.96902 0.92416 0.85975 0.88118 0.86904 0.89107 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.11 71.98 0.66 -2.81 16 2 C -0.12 -2.20 5.61 30.59 0.17 -2.03 16 3 C 0.18 4.11 2.44 44.99 0.11 4.22 16 4 H 0.08 1.91 7.47 -2.38 -0.02 1.89 16 5 N -1.11 -32.06 4.86 -169.38 -0.82 -32.88 16 6 S 2.79 110.02 5.94 -56.49 -0.34 109.69 16 7 O -1.02 -50.46 17.30 -128.00 -2.21 -52.67 16 8 O -1.00 -39.53 14.79 -128.00 -1.89 -41.42 16 9 N -1.00 -40.85 2.59 -543.22 -1.40 -42.25 16 10 C 0.09 2.89 10.51 127.77 1.34 4.23 16 11 C 0.28 14.11 4.40 85.64 0.38 14.48 16 12 C -0.55 -31.35 9.38 25.60 0.24 -31.11 16 13 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 14 C 0.01 0.71 5.46 84.65 0.46 1.17 16 15 N -0.92 -54.25 13.29 21.45 0.28 -53.96 16 16 Si 0.95 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 20 C -0.16 -3.23 5.30 -10.79 -0.06 -3.29 16 21 C -0.15 -2.77 10.18 30.62 0.31 -2.46 16 22 C -0.20 -5.05 10.22 30.62 0.31 -4.74 16 23 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.03 0.88 7.02 -2.39 -0.02 0.86 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.42 10.93 8.96 -96.74 -0.87 10.07 16 29 H 0.07 1.83 7.64 -2.39 -0.02 1.81 16 30 H 0.07 2.34 8.11 -2.39 -0.02 2.32 16 31 H 0.08 2.43 6.88 -2.38 -0.02 2.41 16 32 H 0.03 1.46 7.97 -2.39 -0.02 1.44 16 33 H 0.01 0.71 7.76 -2.39 -0.02 0.69 16 34 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 35 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.10 1.67 8.08 -2.39 -0.02 1.66 16 37 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.08 2.55 5.98 -2.39 -0.01 2.53 16 Total: -1.00 -70.69 331.21 -0.27 -70.96 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.16 Total: 17.70 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 3.93 Total: -22.33 kcal Atomic # 7 Polarization: -127.15 SS G_CDS: -1.94 Total: -129.09 kcal Atomic # 8 Polarization: -89.99 SS G_CDS: -4.11 Total: -94.10 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 110.02 SS G_CDS: -0.34 Total: 109.69 kcal Total: -70.69 -0.27 -70.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594858147.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.267 kcal (2) G-P(sol) polarization free energy of solvation -70.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds