Wall clock time and date at job start Mon Mar 30 2020 20:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47167 * 2 1 4 4 C 1.38363 * 120.26871 * 269.98049 * 3 2 1 5 5 N 1.31895 * 121.19490 * 179.97438 * 4 3 2 6 6 C 1.32222 * 121.80991 * 0.02562 * 5 4 3 7 7 O 1.35431 * 119.80464 * 180.02562 * 6 5 4 8 8 C 1.40344 * 120.39068 * 359.97438 * 6 5 4 9 9 C 1.47416 * 120.60061 * 180.02562 * 8 6 5 10 10 O 1.21627 * 120.00234 * 327.43402 * 9 8 6 11 11 N 1.34778 * 119.99718 * 147.43682 * 9 8 6 12 12 C 1.36900 * 120.00275 * 7.00791 * 11 9 8 13 13 H 1.08002 * 119.99834 * 317.94457 * 12 11 9 14 14 C 1.39026 * 120.00201 * 137.94285 * 12 11 9 15 15 N 1.31377 * 119.99634 * 340.59536 * 14 12 11 16 16 Si 1.86801 * 119.99750 * 160.59443 * 14 12 11 17 17 H 1.48497 * 109.47296 * 60.00387 * 16 14 12 18 18 H 1.48503 * 109.46579 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47147 * 299.99802 * 16 14 12 20 20 C 1.46503 * 119.99801 * 187.00946 * 11 9 8 21 21 C 1.53002 * 117.49794 * 170.57615 * 20 11 9 22 22 C 1.53001 * 60.00163 * 252.51159 * 21 20 11 23 23 C 1.38326 * 120.26672 * 90.00192 * 3 2 1 24 24 H 1.09005 * 109.47188 * 299.99775 * 1 2 3 25 25 H 1.09003 * 109.47153 * 59.99932 * 1 2 3 26 26 H 1.09009 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46849 * 240.00052 * 2 1 3 28 28 H 1.08998 * 109.47002 * 120.00545 * 2 1 3 29 29 H 1.07998 * 119.39955 * 0.02562 * 4 3 2 30 30 H 0.96694 * 114.00094 * 89.99423 * 7 6 5 31 31 H 0.97005 * 119.99578 * 185.05817 * 15 14 12 32 32 H 1.08995 * 115.55323 * 316.28784 * 20 11 9 33 33 H 1.09004 * 117.49553 * 359.97438 * 21 20 11 34 34 H 1.08998 * 117.49706 * 145.02279 * 21 20 11 35 35 H 1.08995 * 117.50006 * 252.51248 * 22 21 20 36 36 H 1.09001 * 117.49863 * 107.48784 * 22 21 20 37 37 H 1.08008 * 120.82758 * 359.70406 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2652 2.0782 -1.1950 5 7 2.7043 3.3217 -1.2163 6 6 2.9423 3.9960 -0.1041 7 8 3.3922 5.2715 -0.1734 8 6 2.7304 3.3980 1.1478 9 6 2.9937 4.1457 2.3907 10 8 3.8863 4.9710 2.4265 11 7 2.2451 3.9146 3.4874 12 6 1.3381 2.8892 3.4936 13 1 0.7197 2.7101 2.6265 14 6 1.2132 2.0783 4.6160 15 7 2.1823 2.0288 5.5016 16 14 -0.3326 1.0595 4.8647 17 1 -0.4962 0.1218 3.7248 18 1 -0.2183 0.2870 6.1278 19 1 -1.5118 1.9590 4.9389 20 6 2.4021 4.7608 4.6730 21 6 1.3802 4.5950 5.7996 22 6 1.3468 5.8421 4.9139 23 6 2.2648 2.0781 1.1947 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0833 1.5640 -2.1271 30 1 2.6898 5.9357 -0.1935 31 1 2.1278 1.4090 6.2459 32 1 3.4300 4.9890 4.9550 33 1 0.5909 3.8566 5.6584 34 1 1.7358 4.7140 6.8231 35 1 1.6804 6.7815 5.3547 36 1 0.5358 5.9239 4.1903 37 1 2.0863 1.5875 2.1402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596917314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:08 Heat of formation + Delta-G solvation = 0.153751 kcal Electronic energy + Delta-G solvation = -22097.363067 eV Core-core repulsion = 18841.636961 eV Total energy + Delta-G solvation = -3255.726107 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24046 -38.44496 -36.90222 -35.94606 -33.88033 -33.44008 -31.89945 -30.83756 -28.65283 -25.42535 -24.24740 -23.43258 -22.17354 -21.32947 -20.48536 -19.27570 -18.33164 -17.19929 -16.62097 -15.91840 -15.50844 -15.10627 -14.67328 -14.19052 -14.01185 -13.76071 -13.49114 -13.12597 -13.00229 -12.58896 -12.19862 -12.14091 -11.87381 -11.62092 -11.43049 -11.24608 -11.03693 -10.85396 -10.79456 -10.52377 -10.49711 -9.88237 -9.42705 -9.18214 -9.01887 -8.87850 -8.48037 -8.21378 -7.48902 -6.54284 -4.23881 1.27909 1.72962 2.97417 3.07636 3.08668 3.68686 3.89594 4.01380 4.40448 4.49293 4.68806 5.03303 5.08852 5.18599 5.20674 5.53427 5.60625 5.67834 5.72412 5.92194 5.95535 6.03076 6.05118 6.06847 6.22515 6.29593 6.38561 6.41992 6.68979 6.72843 6.80690 6.97658 7.05886 7.17907 7.25279 7.82967 8.01657 8.19370 8.32706 8.86916 9.34582 9.78989 10.47998 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.009501 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.721680 B = 2946.417100 C = 4536.912505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.168 4.168 4 C 0.123 3.877 5 N -0.517 5.517 6 C 0.333 3.667 7 O -0.464 6.464 8 C -0.156 4.156 9 C 0.521 3.479 10 O -0.577 6.577 11 N -0.407 5.407 12 C -0.365 4.365 13 H 0.092 0.908 14 C 0.058 3.942 15 N -0.836 5.836 16 Si 0.899 3.101 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.269 1.269 20 C 0.119 3.881 21 C -0.139 4.139 22 C -0.219 4.219 23 C -0.017 4.017 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.151 0.849 30 H 0.392 0.608 31 H 0.274 0.726 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.560 -3.247 -5.304 8.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.171 4.171 4 C -0.035 4.035 5 N -0.235 5.235 6 C 0.153 3.847 7 O -0.269 6.269 8 C -0.162 4.162 9 C 0.309 3.691 10 O -0.461 6.461 11 N -0.125 5.125 12 C -0.492 4.492 13 H 0.109 0.891 14 C -0.151 4.151 15 N -0.468 5.468 16 Si 0.724 3.276 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.194 1.194 20 C 0.014 3.986 21 C -0.177 4.177 22 C -0.258 4.258 23 C -0.043 4.043 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.168 0.832 30 H 0.249 0.751 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -4.355 -2.658 -5.769 7.701 hybrid contribution -1.390 -0.738 1.020 1.875 sum -5.745 -3.396 -4.749 8.191 Atomic orbital electron populations 1.21782 0.94989 1.01462 1.02358 1.20371 0.95973 0.91923 1.02828 1.20895 1.04032 0.98041 0.94106 1.22328 0.94468 0.89354 0.97350 1.67136 1.14777 1.09894 1.31720 1.19192 0.91927 0.86748 0.86814 1.84771 1.34614 1.11991 1.95542 1.21156 1.03675 0.96815 0.94575 1.17812 0.82677 0.84525 0.84077 1.90685 1.32098 1.38272 1.85011 1.42682 1.33605 1.26277 1.09893 1.19353 1.17405 1.09065 1.03358 0.89076 1.25354 0.97216 0.96471 0.96106 1.69974 1.29721 1.33774 1.13346 0.86455 0.82571 0.80032 0.78580 1.19083 1.20528 1.19410 1.21022 0.94194 0.93942 0.89487 1.22960 1.02629 0.97894 0.94185 1.23408 1.03893 0.93627 1.04826 1.22822 0.88750 0.92603 1.00095 0.92116 0.92803 0.92639 0.91195 0.90650 0.83189 0.75144 0.91593 0.87979 0.87806 0.90305 0.90102 0.89750 0.80295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.89 37.16 0.37 -1.41 16 2 C -0.07 -0.93 6.08 -27.88 -0.17 -1.10 16 3 C -0.17 -2.72 5.14 -104.54 -0.54 -3.26 16 4 C 0.12 1.95 10.84 -17.48 -0.19 1.76 16 5 N -0.52 -9.73 10.37 -12.96 -0.13 -9.87 16 6 C 0.33 6.88 7.74 -16.59 -0.13 6.75 16 7 O -0.46 -9.31 12.15 -36.32 -0.44 -9.76 16 8 C -0.16 -3.42 5.58 -104.69 -0.58 -4.00 16 9 C 0.52 12.97 7.29 -12.52 -0.09 12.88 16 10 O -0.58 -15.80 15.80 -13.09 -0.21 -16.01 16 11 N -0.41 -9.90 2.81 -108.93 -0.31 -10.21 16 12 C -0.36 -8.46 5.70 -15.00 -0.09 -8.54 16 13 H 0.09 2.05 6.08 -52.49 -0.32 1.73 16 14 C 0.06 1.33 3.07 -17.45 -0.05 1.27 16 15 N -0.84 -20.24 11.44 55.50 0.64 -19.61 16 16 Si 0.90 17.49 29.25 -169.99 -4.97 12.52 16 17 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 C 0.12 2.76 5.18 -67.93 -0.35 2.41 16 21 C -0.14 -2.93 8.10 -26.73 -0.22 -3.14 16 22 C -0.22 -4.36 10.46 -26.73 -0.28 -4.64 16 23 C -0.02 -0.34 7.53 -38.87 -0.29 -0.63 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 27 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 29 H 0.15 1.84 8.06 -52.49 -0.42 1.41 16 30 H 0.39 5.95 9.06 45.56 0.41 6.37 16 31 H 0.27 6.31 8.32 -40.82 -0.34 5.97 16 32 H 0.10 2.50 8.02 -51.93 -0.42 2.08 16 33 H 0.10 2.31 5.25 -51.93 -0.27 2.04 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 37 H 0.18 3.73 5.37 -52.48 -0.28 3.45 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -29.25 310.93 -7.16 -36.41 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -3.81 Total: 13.48 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.61 Total: -1.65 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.20 Total: -39.68 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.65 Total: -25.76 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -4.97 Total: 12.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.25 -7.16 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -29.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds