Wall clock time and date at job start Mon Mar 30 2020 20:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47167 * 2 1 4 4 C 1.38363 * 120.26871 * 269.98049 * 3 2 1 5 5 N 1.31895 * 121.19490 * 179.97438 * 4 3 2 6 6 C 1.32222 * 121.80991 * 0.02562 * 5 4 3 7 7 O 1.35431 * 119.80464 * 180.02562 * 6 5 4 8 8 C 1.40344 * 120.39068 * 359.97438 * 6 5 4 9 9 C 1.47416 * 120.60061 * 180.02562 * 8 6 5 10 10 O 1.21627 * 120.00234 * 327.43402 * 9 8 6 11 11 N 1.34778 * 119.99718 * 147.43682 * 9 8 6 12 12 C 1.36900 * 120.00275 * 7.00791 * 11 9 8 13 13 H 1.08002 * 119.99834 * 317.94457 * 12 11 9 14 14 C 1.39026 * 120.00201 * 137.94285 * 12 11 9 15 15 N 1.31377 * 119.99634 * 340.59536 * 14 12 11 16 16 Si 1.86801 * 119.99750 * 160.59443 * 14 12 11 17 17 H 1.48497 * 109.47296 * 60.00387 * 16 14 12 18 18 H 1.48503 * 109.46579 * 179.97438 * 16 14 12 19 19 H 1.48495 * 109.47147 * 299.99802 * 16 14 12 20 20 C 1.46503 * 119.99801 * 187.00946 * 11 9 8 21 21 C 1.53002 * 117.49794 * 170.57615 * 20 11 9 22 22 C 1.53001 * 60.00163 * 252.51159 * 21 20 11 23 23 C 1.38326 * 120.26672 * 90.00192 * 3 2 1 24 24 H 1.09005 * 109.47188 * 299.99775 * 1 2 3 25 25 H 1.09003 * 109.47153 * 59.99932 * 1 2 3 26 26 H 1.09009 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46849 * 240.00052 * 2 1 3 28 28 H 1.08998 * 109.47002 * 120.00545 * 2 1 3 29 29 H 1.07998 * 119.39955 * 0.02562 * 4 3 2 30 30 H 0.96694 * 114.00094 * 89.99423 * 7 6 5 31 31 H 0.97005 * 119.99578 * 185.05817 * 15 14 12 32 32 H 1.08995 * 115.55323 * 316.28784 * 20 11 9 33 33 H 1.09004 * 117.49553 * 359.97438 * 21 20 11 34 34 H 1.08998 * 117.49706 * 145.02279 * 21 20 11 35 35 H 1.08995 * 117.50006 * 252.51248 * 22 21 20 36 36 H 1.09001 * 117.49863 * 107.48784 * 22 21 20 37 37 H 1.08008 * 120.82758 * 359.70406 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2652 2.0782 -1.1950 5 7 2.7043 3.3217 -1.2163 6 6 2.9423 3.9960 -0.1041 7 8 3.3922 5.2715 -0.1734 8 6 2.7304 3.3980 1.1478 9 6 2.9937 4.1457 2.3907 10 8 3.8863 4.9710 2.4265 11 7 2.2451 3.9146 3.4874 12 6 1.3381 2.8892 3.4936 13 1 0.7197 2.7101 2.6265 14 6 1.2132 2.0783 4.6160 15 7 2.1823 2.0288 5.5016 16 14 -0.3326 1.0595 4.8647 17 1 -0.4962 0.1218 3.7248 18 1 -0.2183 0.2870 6.1278 19 1 -1.5118 1.9590 4.9389 20 6 2.4021 4.7608 4.6730 21 6 1.3802 4.5950 5.7996 22 6 1.3468 5.8421 4.9139 23 6 2.2648 2.0781 1.1947 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.0833 1.5640 -2.1271 30 1 2.6898 5.9357 -0.1935 31 1 2.1278 1.4090 6.2459 32 1 3.4300 4.9890 4.9550 33 1 0.5909 3.8566 5.6584 34 1 1.7358 4.7140 6.8231 35 1 1.6804 6.7815 5.3547 36 1 0.5358 5.9239 4.1903 37 1 2.0863 1.5875 2.1402 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596917314.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:08 Heat of formation + Delta-G solvation = -19.776630 kcal Electronic energy + Delta-G solvation = -22098.227314 eV Core-core repulsion = 18841.636961 eV Total energy + Delta-G solvation = -3256.590353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77652 -40.17316 -38.40461 -37.73726 -35.29438 -34.99162 -33.64674 -32.43870 -29.92102 -27.23391 -25.72532 -24.77273 -23.66067 -22.98517 -22.01503 -21.03672 -19.87976 -18.86477 -18.18224 -17.56744 -17.05571 -16.77799 -16.36560 -15.75369 -15.42620 -15.11959 -14.80021 -14.72948 -14.54309 -14.12819 -13.83682 -13.56870 -13.34395 -13.01619 -12.84613 -12.74951 -12.66894 -12.27232 -12.10992 -12.08722 -11.75897 -11.59929 -11.16389 -10.82541 -10.63268 -10.54690 -10.17872 -9.66226 -9.30828 -8.30935 -6.07098 -0.19194 0.25822 1.42642 1.49023 1.55506 2.01151 2.24478 2.54164 2.77662 2.88347 2.96393 3.34910 3.82293 3.89209 3.99053 4.15212 4.16048 4.28707 4.33270 4.45075 4.49801 4.58890 4.70493 4.80720 4.89201 5.01695 5.07257 5.17960 5.23124 5.25984 5.40144 5.44430 5.47252 5.50934 5.68802 6.01747 6.37604 6.62688 6.90610 7.06257 7.49909 7.96116 8.72510 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.009501 C = 0.006170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.721680 B = 2946.417100 C = 4536.912505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C -0.155 4.155 4 C 0.135 3.865 5 N -0.523 5.523 6 C 0.322 3.678 7 O -0.480 6.480 8 C -0.186 4.186 9 C 0.504 3.496 10 O -0.619 6.619 11 N -0.410 5.410 12 C -0.372 4.372 13 H 0.096 0.904 14 C 0.031 3.969 15 N -0.869 5.869 16 Si 0.958 3.042 17 H -0.249 1.249 18 H -0.283 1.283 19 H -0.268 1.268 20 C 0.080 3.920 21 C -0.127 4.127 22 C -0.191 4.191 23 C -0.026 4.026 24 H 0.037 0.963 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.200 0.800 30 H 0.407 0.593 31 H 0.275 0.725 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.548 -5.032 -6.796 11.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.157 4.157 4 C -0.023 4.023 5 N -0.242 5.242 6 C 0.143 3.857 7 O -0.288 6.288 8 C -0.193 4.193 9 C 0.294 3.706 10 O -0.507 6.507 11 N -0.127 5.127 12 C -0.499 4.499 13 H 0.114 0.886 14 C -0.176 4.176 15 N -0.503 5.503 16 Si 0.780 3.220 17 H -0.173 1.173 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.025 4.025 21 C -0.164 4.164 22 C -0.230 4.230 23 C -0.052 4.052 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.089 0.911 29 H 0.217 0.783 30 H 0.267 0.733 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -6.371 -4.440 -7.260 10.631 hybrid contribution -0.750 -0.226 1.438 1.638 sum -7.121 -4.666 -5.822 10.314 Atomic orbital electron populations 1.21780 0.94079 1.02764 1.01832 1.20495 0.96593 0.89473 1.04375 1.21242 1.02153 0.99530 0.92741 1.23148 0.91819 0.88226 0.99090 1.67261 1.15237 1.11173 1.30546 1.19244 0.92437 0.87033 0.86967 1.84704 1.35998 1.12582 1.95558 1.21056 1.06543 0.97935 0.93745 1.18392 0.82287 0.84575 0.85344 1.90622 1.33825 1.40298 1.85928 1.42888 1.33314 1.26548 1.09904 1.19562 1.17127 1.09260 1.03932 0.88622 1.25997 0.99301 0.97071 0.95266 1.70089 1.31527 1.34722 1.13928 0.85533 0.78910 0.78812 0.78738 1.17297 1.20809 1.19271 1.21087 0.94023 0.96669 0.90677 1.22888 1.01092 0.98125 0.94303 1.23430 1.01821 0.93979 1.03728 1.22669 0.89541 0.91941 1.01002 0.94414 0.91599 0.90463 0.87697 0.91130 0.78349 0.73336 0.91544 0.90449 0.88856 0.89009 0.87458 0.89654 0.82008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.89 71.98 0.71 -2.25 16 2 C -0.07 -1.55 6.08 29.85 0.18 -1.37 16 3 C -0.15 -4.61 5.14 -19.81 -0.10 -4.72 16 4 C 0.13 3.83 10.84 84.71 0.92 4.75 16 5 N -0.52 -18.85 10.37 -307.94 -3.19 -22.04 16 6 C 0.32 13.44 7.74 85.15 0.66 14.09 16 7 O -0.48 -19.83 12.15 -69.73 -0.85 -20.68 16 8 C -0.19 -8.39 5.58 -19.91 -0.11 -8.50 16 9 C 0.50 26.31 7.29 86.66 0.63 26.94 16 10 O -0.62 -35.87 15.80 13.42 0.21 -35.66 16 11 N -0.41 -20.70 2.81 -616.80 -1.73 -22.43 16 12 C -0.37 -17.54 5.70 84.09 0.48 -17.06 16 13 H 0.10 4.35 6.08 -2.91 -0.02 4.34 16 14 C 0.03 1.40 3.07 84.95 0.26 1.66 16 15 N -0.87 -42.81 11.44 21.68 0.25 -42.57 16 16 Si 0.96 35.18 29.25 68.60 2.01 37.19 16 17 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 18 H -0.28 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 20 C 0.08 3.87 5.18 44.99 0.23 4.11 16 21 C -0.13 -5.33 8.10 30.60 0.25 -5.08 16 22 C -0.19 -7.56 10.46 30.60 0.32 -7.24 16 23 C -0.03 -1.01 7.53 22.73 0.17 -0.84 16 24 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.10 1.61 8.09 -2.39 -0.02 1.59 16 28 H 0.07 1.64 8.09 -2.39 -0.02 1.62 16 29 H 0.20 3.70 8.06 -2.91 -0.02 3.68 16 30 H 0.41 12.87 9.06 -74.06 -0.67 12.19 16 31 H 0.27 12.81 8.32 -92.70 -0.77 12.04 16 32 H 0.08 4.03 8.02 -2.39 -0.02 4.01 16 33 H 0.09 4.14 5.25 -2.38 -0.01 4.13 16 34 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 36 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.16 6.86 5.37 -2.91 -0.02 6.85 16 Total: -1.00 -65.74 310.93 1.73 -64.01 By element: Atomic # 1 Polarization: 37.25 SS G_CDS: 0.44 Total: 37.69 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 4.60 Total: 4.49 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.68 Total: -87.03 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.63 Total: -56.34 kcal Atomic # 14 Polarization: 35.18 SS G_CDS: 2.01 Total: 37.19 kcal Total: -65.74 1.73 -64.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596917314.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.230 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds