Wall clock time and date at job start Mon Mar 30 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99863 * 2 1 4 4 H 1.09002 * 109.47196 * 240.14448 * 3 2 1 5 5 O 1.42902 * 109.47283 * 0.14417 * 3 2 1 6 6 C 1.50704 * 109.46964 * 120.14177 * 3 2 1 7 7 O 1.21276 * 120.00172 * 250.45195 * 6 3 2 8 8 N 1.34781 * 119.99430 * 70.45383 * 6 3 2 9 9 C 1.46495 * 120.00343 * 5.63623 * 8 6 3 10 10 C 1.50700 * 109.47306 * 85.06387 * 9 8 6 11 11 H 1.08006 * 119.99690 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00334 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00526 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99895 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47108 * 89.99890 * 14 12 10 16 16 H 1.48503 * 109.47313 * 210.00169 * 14 12 10 17 17 H 1.48503 * 109.47051 * 329.99740 * 14 12 10 18 18 C 1.46500 * 119.99425 * 185.63577 * 8 6 3 19 19 C 1.50698 * 109.47389 * 89.99972 * 18 8 6 20 20 C 1.38670 * 120.41902 * 269.72388 * 19 18 8 21 21 C 1.38629 * 118.41608 * 179.78167 * 20 19 18 22 22 C 1.38222 * 119.16640 * 0.51097 * 21 20 19 23 23 N 1.31856 * 120.75794 * 359.72250 * 22 21 20 24 24 C 1.31876 * 121.73038 * 0.02562 * 23 22 21 25 25 H 1.07994 * 119.99948 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99956 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00109 * 179.73565 * 2 1 3 28 28 H 0.96704 * 113.99995 * 59.99355 * 5 3 2 29 29 H 1.08997 * 109.47314 * 205.06670 * 9 8 6 30 30 H 1.08998 * 109.47302 * 325.06269 * 9 8 6 31 31 H 0.97002 * 120.00284 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.46771 * 210.00029 * 18 8 6 33 33 H 1.08999 * 109.47347 * 330.00078 * 18 8 6 34 34 H 1.08001 * 120.79290 * 0.02562 * 20 19 18 35 35 H 1.08003 * 120.41615 * 180.21339 * 21 20 19 36 36 H 1.07998 * 119.62413 * 179.75418 * 22 21 20 37 37 H 1.07998 * 119.62012 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6882 1.3640 -0.8913 5 8 1.1349 2.3913 0.0034 6 6 2.9325 1.3834 1.2287 7 8 2.6557 2.1592 2.1189 8 7 4.0174 0.5912 1.3383 9 6 4.4226 -0.2557 0.2138 10 6 5.2818 0.5427 -0.7325 11 1 5.5041 1.5775 -0.5174 12 6 5.7849 -0.0480 -1.8721 13 7 6.5351 0.6487 -2.6977 14 14 5.4009 -1.8379 -2.2437 15 1 4.1564 -1.9203 -3.0498 16 1 6.5253 -2.4374 -3.0064 17 1 5.2159 -2.5792 -0.9703 18 6 4.7915 0.5772 2.5821 19 6 4.2396 -0.4782 3.5054 20 6 3.2397 -0.1636 4.4133 21 6 2.7592 -1.1677 5.2396 22 6 3.2963 -2.4373 5.1393 23 7 4.2500 -2.6991 4.2672 24 6 4.7277 -1.7703 3.4621 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0043 28 1 0.5451 2.4022 0.7697 29 1 4.9892 -1.1088 0.5870 30 1 3.5361 -0.6104 -0.3119 31 1 6.8893 0.2329 -3.4993 32 1 5.8348 0.3546 2.3582 33 1 4.7233 1.5527 3.0635 34 1 2.8420 0.8387 4.4724 35 1 1.9784 -0.9593 5.9561 36 1 2.9302 -3.2242 5.7822 37 1 5.5094 -2.0223 2.7609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596964856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:11 Heat of formation + Delta-G solvation = -22.501604 kcal Electronic energy + Delta-G solvation = -21710.879948 eV Core-core repulsion = 18454.171431 eV Total energy + Delta-G solvation = -3256.708517 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.30542 -39.48919 -36.79379 -35.45143 -33.18376 -32.59576 -32.19387 -31.46733 -28.33462 -27.70079 -25.38437 -23.51636 -22.65198 -22.03385 -19.97815 -19.09447 -17.24156 -17.17001 -16.90217 -16.41960 -16.21838 -15.90937 -15.32160 -14.69956 -14.42115 -14.06769 -13.61375 -13.44454 -13.19301 -12.90002 -12.77113 -12.52290 -12.16756 -11.99737 -11.94366 -11.35674 -11.22827 -11.09729 -10.81088 -10.49123 -10.38228 -9.85790 -9.70156 -9.66769 -9.38993 -9.08204 -8.82127 -8.71319 -7.98405 -6.29875 -4.33699 1.14351 1.36905 2.28505 3.08429 3.12010 3.19196 3.22099 3.57386 4.03144 4.18767 4.51478 4.61776 4.86270 4.93598 4.99435 5.00713 5.09768 5.14595 5.22548 5.35475 5.50770 5.74035 5.86980 5.89664 6.00189 6.04898 6.20402 6.24601 6.43249 6.47060 6.66714 6.77668 6.78946 7.10025 7.31651 7.72829 7.92992 8.03295 8.26720 8.62884 8.77215 9.27905 10.82305 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.007745 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.347251 B = 3614.178330 C = 4671.662573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.179 4.179 3 C 0.117 3.883 4 H 0.152 0.848 5 O -0.537 6.537 6 C 0.506 3.494 7 O -0.561 6.561 8 N -0.581 5.581 9 C 0.201 3.799 10 C -0.549 4.549 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.885 5.885 14 Si 0.866 3.134 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.157 3.843 19 C -0.146 4.146 20 C -0.056 4.056 21 C -0.179 4.179 22 C 0.091 3.909 23 N -0.489 5.489 24 C 0.112 3.888 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.374 0.626 29 H 0.037 0.963 30 H 0.034 0.966 31 H 0.268 0.732 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.151 0.849 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.483 -4.784 10.895 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.197 4.197 3 C 0.055 3.945 4 H 0.169 0.831 5 O -0.341 6.341 6 C 0.293 3.707 7 O -0.442 6.442 8 N -0.311 5.311 9 C 0.081 3.919 10 C -0.587 4.587 11 H 0.099 0.901 12 C -0.124 4.124 13 N -0.522 5.522 14 Si 0.692 3.308 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C 0.034 3.966 19 C -0.149 4.149 20 C -0.083 4.083 21 C -0.199 4.199 22 C -0.066 4.066 23 N -0.197 5.197 24 C -0.046 4.046 25 H 0.123 0.877 26 H 0.118 0.882 27 H 0.141 0.859 28 H 0.222 0.778 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.168 0.832 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.861 -5.090 10.544 14.103 hybrid contribution -0.592 -0.391 0.102 0.717 sum -8.453 -5.482 10.646 14.657 Atomic orbital electron populations 1.23774 0.95795 1.02220 1.00395 1.23560 0.96709 0.98689 1.00760 1.20955 0.89786 0.85010 0.98792 0.83095 1.86630 1.50083 1.48883 1.48537 1.21120 0.81637 0.79604 0.88301 1.90587 1.72882 1.38563 1.42128 1.47918 1.26492 1.42530 1.14203 1.20027 0.96345 0.90981 0.84586 1.21357 1.31764 1.00014 1.05599 0.90124 1.24859 0.94242 0.97695 0.95628 1.69882 1.33018 1.36747 1.12515 0.86998 0.78883 0.85488 0.79394 1.19657 1.20666 1.18715 1.20191 0.95592 0.97059 0.83794 1.21443 0.98265 0.97188 0.98034 1.21662 0.93758 1.00080 0.92798 1.22121 1.01932 0.94574 1.01239 1.22712 0.92730 0.95592 0.95611 1.67699 1.11065 1.35917 1.05055 1.22787 0.97852 0.88406 0.95510 0.87730 0.88155 0.85929 0.77767 0.94514 0.94808 0.92167 0.88739 0.89280 0.84491 0.85130 0.83178 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.43 13.93 29.01 0.40 -2.03 16 2 C -0.18 -2.80 8.69 -36.03 -0.31 -3.11 16 3 C 0.12 2.11 3.13 -29.03 -0.09 2.02 16 4 H 0.15 3.06 7.11 -51.93 -0.37 2.69 16 5 O -0.54 -9.29 12.00 -54.92 -0.66 -9.95 16 6 C 0.51 9.84 6.94 -10.98 -0.08 9.76 16 7 O -0.56 -11.58 15.79 -14.13 -0.22 -11.81 16 8 N -0.58 -11.05 2.45 -176.44 -0.43 -11.48 16 9 C 0.20 4.16 3.87 -5.20 -0.02 4.14 16 10 C -0.55 -13.81 9.34 -34.44 -0.32 -14.13 16 11 H 0.08 2.29 8.06 -52.48 -0.42 1.87 16 12 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 13 N -0.88 -25.06 13.96 55.43 0.77 -24.28 16 14 Si 0.87 19.12 27.47 -169.99 -4.67 14.45 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.26 -5.44 6.54 56.52 0.37 -5.07 16 18 C 0.16 2.62 5.58 -5.19 -0.03 2.59 16 19 C -0.15 -2.21 5.48 -104.48 -0.57 -2.79 16 20 C -0.06 -0.79 9.86 -39.28 -0.39 -1.18 16 21 C -0.18 -2.13 10.11 -39.44 -0.40 -2.53 16 22 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 23 N -0.49 -7.33 10.36 -13.26 -0.14 -7.46 16 24 C 0.11 1.69 10.86 -17.55 -0.19 1.50 16 25 H 0.10 1.27 6.41 -52.49 -0.34 0.93 16 26 H 0.10 1.13 8.06 -52.48 -0.42 0.70 16 27 H 0.12 1.93 6.42 -52.49 -0.34 1.59 16 28 H 0.37 5.34 7.74 45.56 0.35 5.70 16 29 H 0.04 0.74 7.09 -51.93 -0.37 0.37 16 30 H 0.03 0.68 4.08 -51.93 -0.21 0.47 16 31 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.09 1.51 8.02 -51.93 -0.42 1.10 16 33 H 0.09 1.50 7.30 -51.93 -0.38 1.12 16 34 H 0.14 1.93 8.00 -52.49 -0.42 1.51 16 35 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.16 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 318.00 15.07 4.79 4.79 Total: -1.00 -30.01 318.00 -6.61 -36.62 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -3.77 Total: 11.93 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.29 Total: -2.81 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.20 Total: -43.23 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.88 Total: -21.75 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.67 Total: 14.45 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.01 -6.61 -36.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.122 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds