Wall clock time and date at job start Mon Mar 30 2020 20:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 119.99863 * 2 1 4 4 H 1.09002 * 109.47196 * 240.14448 * 3 2 1 5 5 O 1.42902 * 109.47283 * 0.14417 * 3 2 1 6 6 C 1.50704 * 109.46964 * 120.14177 * 3 2 1 7 7 O 1.21276 * 120.00172 * 250.45195 * 6 3 2 8 8 N 1.34781 * 119.99430 * 70.45383 * 6 3 2 9 9 C 1.46495 * 120.00343 * 5.63623 * 8 6 3 10 10 C 1.50700 * 109.47306 * 85.06387 * 9 8 6 11 11 H 1.08006 * 119.99690 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00334 * 179.97438 * 10 9 8 13 13 N 1.31519 * 120.00526 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99895 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47108 * 89.99890 * 14 12 10 16 16 H 1.48503 * 109.47313 * 210.00169 * 14 12 10 17 17 H 1.48503 * 109.47051 * 329.99740 * 14 12 10 18 18 C 1.46500 * 119.99425 * 185.63577 * 8 6 3 19 19 C 1.50698 * 109.47389 * 89.99972 * 18 8 6 20 20 C 1.38670 * 120.41902 * 269.72388 * 19 18 8 21 21 C 1.38629 * 118.41608 * 179.78167 * 20 19 18 22 22 C 1.38222 * 119.16640 * 0.51097 * 21 20 19 23 23 N 1.31856 * 120.75794 * 359.72250 * 22 21 20 24 24 C 1.31876 * 121.73038 * 0.02562 * 23 22 21 25 25 H 1.07994 * 119.99948 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99956 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.00109 * 179.73565 * 2 1 3 28 28 H 0.96704 * 113.99995 * 59.99355 * 5 3 2 29 29 H 1.08997 * 109.47314 * 205.06670 * 9 8 6 30 30 H 1.08998 * 109.47302 * 325.06269 * 9 8 6 31 31 H 0.97002 * 120.00284 * 179.97438 * 13 12 10 32 32 H 1.09004 * 109.46771 * 210.00029 * 18 8 6 33 33 H 1.08999 * 109.47347 * 330.00078 * 18 8 6 34 34 H 1.08001 * 120.79290 * 0.02562 * 20 19 18 35 35 H 1.08003 * 120.41615 * 180.21339 * 21 20 19 36 36 H 1.07998 * 119.62413 * 179.75418 * 22 21 20 37 37 H 1.07998 * 119.62012 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 2.6882 1.3640 -0.8913 5 8 1.1349 2.3913 0.0034 6 6 2.9325 1.3834 1.2287 7 8 2.6557 2.1592 2.1189 8 7 4.0174 0.5912 1.3383 9 6 4.4226 -0.2557 0.2138 10 6 5.2818 0.5427 -0.7325 11 1 5.5041 1.5775 -0.5174 12 6 5.7849 -0.0480 -1.8721 13 7 6.5351 0.6487 -2.6977 14 14 5.4009 -1.8379 -2.2437 15 1 4.1564 -1.9203 -3.0498 16 1 6.5253 -2.4374 -3.0064 17 1 5.2159 -2.5792 -0.9703 18 6 4.7915 0.5772 2.5821 19 6 4.2396 -0.4782 3.5054 20 6 3.2397 -0.1636 4.4133 21 6 2.7592 -1.1677 5.2396 22 6 3.2963 -2.4373 5.1393 23 7 4.2500 -2.6991 4.2672 24 6 4.7277 -1.7703 3.4621 25 1 -0.5400 0.9353 0.0004 26 1 -0.5400 -0.9353 -0.0004 27 1 1.8500 -0.9353 0.0043 28 1 0.5451 2.4022 0.7697 29 1 4.9892 -1.1088 0.5870 30 1 3.5361 -0.6104 -0.3119 31 1 6.8893 0.2329 -3.4993 32 1 5.8348 0.3546 2.3582 33 1 4.7233 1.5527 3.0635 34 1 2.8420 0.8387 4.4724 35 1 1.9784 -0.9593 5.9561 36 1 2.9302 -3.2242 5.7822 37 1 5.5094 -2.0223 2.7609 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596964856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:11 Heat of formation + Delta-G solvation = -42.513941 kcal Electronic energy + Delta-G solvation = -21711.747748 eV Core-core repulsion = 18454.171431 eV Total energy + Delta-G solvation = -3257.576317 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.58464 -40.76088 -38.16901 -37.01630 -34.82522 -34.01026 -33.43454 -32.60867 -30.00913 -29.10187 -26.69887 -24.79372 -24.24726 -23.17302 -21.22191 -20.54842 -19.11342 -18.62313 -18.06334 -17.75219 -17.58294 -17.08325 -16.60548 -16.14668 -15.99975 -15.45306 -14.97653 -14.70488 -14.45933 -14.36345 -14.03083 -13.95455 -13.67234 -13.41549 -13.26560 -12.80740 -12.70887 -12.50627 -12.37690 -12.04464 -11.88171 -11.70267 -11.06843 -10.82849 -10.75839 -10.48189 -10.26324 -9.94111 -9.55460 -8.31945 -6.40620 0.09396 0.31006 1.13928 1.39162 1.40894 1.49429 1.58079 2.18794 2.32415 2.91917 3.01684 3.30184 3.49784 3.53778 3.80316 3.85318 3.94132 4.06589 4.08589 4.21162 4.42486 4.46600 4.61057 4.66064 4.70297 4.80736 4.86576 4.93749 5.17929 5.33965 5.40019 5.53299 5.55681 5.65034 5.75587 6.12903 6.41184 6.57094 6.66739 6.99309 7.09955 7.26504 8.84238 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.007745 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.347251 B = 3614.178330 C = 4671.662573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.208 4.208 3 C 0.122 3.878 4 H 0.121 0.879 5 O -0.545 6.545 6 C 0.499 3.501 7 O -0.578 6.578 8 N -0.583 5.583 9 C 0.212 3.788 10 C -0.546 4.546 11 H 0.031 0.969 12 C 0.023 3.977 13 N -0.940 5.940 14 Si 0.933 3.067 15 H -0.261 1.261 16 H -0.285 1.285 17 H -0.235 1.235 18 C 0.157 3.843 19 C -0.155 4.155 20 C -0.065 4.065 21 C -0.167 4.167 22 C 0.092 3.908 23 N -0.508 5.508 24 C 0.101 3.899 25 H 0.114 0.886 26 H 0.128 0.872 27 H 0.123 0.877 28 H 0.388 0.612 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.269 0.731 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.165 0.835 36 H 0.186 0.814 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -7.346 12.399 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.227 4.227 3 C 0.059 3.941 4 H 0.139 0.861 5 O -0.352 6.352 6 C 0.288 3.712 7 O -0.460 6.460 8 N -0.313 5.313 9 C 0.091 3.909 10 C -0.584 4.584 11 H 0.049 0.951 12 C -0.176 4.176 13 N -0.579 5.579 14 Si 0.755 3.245 15 H -0.186 1.186 16 H -0.211 1.211 17 H -0.158 1.158 18 C 0.034 3.966 19 C -0.159 4.159 20 C -0.092 4.092 21 C -0.186 4.186 22 C -0.065 4.065 23 N -0.217 5.217 24 C -0.055 4.055 25 H 0.132 0.868 26 H 0.146 0.854 27 H 0.141 0.859 28 H 0.238 0.762 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.150 0.850 35 H 0.183 0.817 36 H 0.203 0.797 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.272 -7.650 12.083 17.608 hybrid contribution 0.080 0.529 -0.266 0.598 sum -10.191 -7.121 11.816 17.152 Atomic orbital electron populations 1.24097 0.94815 1.03994 0.95980 1.23364 0.97550 0.97016 1.04743 1.20730 0.89870 0.86839 0.96628 0.86148 1.86589 1.50199 1.48968 1.49417 1.21487 0.81817 0.79208 0.88692 1.90561 1.73381 1.39062 1.42957 1.47927 1.26553 1.42278 1.14523 1.19824 0.96142 0.90632 0.84335 1.21501 1.31996 0.98274 1.06622 0.95107 1.25752 0.93900 1.02696 0.95274 1.70048 1.35131 1.39201 1.13473 0.85925 0.78713 0.79491 0.80332 1.18552 1.21075 1.15792 1.20225 0.95499 0.97559 0.83345 1.21196 0.99380 0.96712 0.98569 1.21737 0.93669 1.00587 0.93184 1.22453 1.01866 0.93617 1.00672 1.23340 0.91496 0.96748 0.94889 1.67736 1.12158 1.35995 1.05788 1.22779 0.98255 0.88405 0.96090 0.86772 0.85374 0.85913 0.76208 0.93191 0.93194 0.92173 0.88868 0.90072 0.85033 0.81704 0.79691 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 13.93 67.78 0.94 -2.54 16 2 C -0.21 -6.13 8.69 25.64 0.22 -5.91 16 3 C 0.12 4.42 3.13 29.10 0.09 4.51 16 4 H 0.12 5.08 7.11 -2.39 -0.02 5.07 16 5 O -0.55 -18.64 12.00 -130.15 -1.56 -20.20 16 6 C 0.50 19.68 6.94 87.66 0.61 20.29 16 7 O -0.58 -24.09 15.79 15.81 0.25 -23.84 16 8 N -0.58 -22.49 2.45 -830.51 -2.04 -24.52 16 9 C 0.21 8.75 3.87 85.63 0.33 9.08 16 10 C -0.55 -28.43 9.34 25.60 0.24 -28.19 16 11 H 0.03 1.87 8.06 -2.91 -0.02 1.84 16 12 C 0.02 1.24 5.47 84.65 0.46 1.71 16 13 N -0.94 -55.28 13.96 21.44 0.30 -54.98 16 14 Si 0.93 38.99 27.47 68.60 1.88 40.88 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.24 -8.71 6.54 99.48 0.65 -8.06 16 18 C 0.16 5.33 5.58 85.63 0.48 5.81 16 19 C -0.16 -4.60 5.48 -19.77 -0.11 -4.71 16 20 C -0.07 -1.72 9.86 22.47 0.22 -1.49 16 21 C -0.17 -3.41 10.11 22.36 0.23 -3.18 16 22 C 0.09 1.97 11.18 84.69 0.95 2.92 16 23 N -0.51 -14.01 10.36 -195.85 -2.03 -16.04 16 24 C 0.10 2.94 10.86 84.67 0.92 3.86 16 25 H 0.11 2.39 6.41 -2.91 -0.02 2.37 16 26 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 27 H 0.12 3.59 6.42 -2.91 -0.02 3.57 16 28 H 0.39 10.62 7.74 -74.05 -0.57 10.05 16 29 H 0.05 1.95 7.09 -2.39 -0.02 1.94 16 30 H 0.05 1.94 4.08 -2.39 -0.01 1.93 16 31 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 32 H 0.09 3.10 8.02 -2.39 -0.02 3.08 16 33 H 0.08 2.84 7.30 -2.39 -0.02 2.82 16 34 H 0.13 3.58 8.00 -2.91 -0.02 3.56 16 35 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 37 H 0.16 4.34 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -67.03 318.00 2.85 -64.18 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.46 Total: 32.40 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.58 Total: 2.14 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -3.77 Total: -95.54 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.31 Total: -44.04 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.88 Total: 40.88 kcal Total: -67.03 2.85 -64.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.662 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds