Wall clock time and date at job start Mon Mar 30 2020 20:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99786 * 2 1 4 4 H 1.08994 * 109.47383 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.47125 * 239.99875 * 3 2 1 6 6 C 1.50702 * 109.46811 * 120.00365 * 3 2 1 7 7 O 1.21283 * 120.00262 * 120.00111 * 6 3 2 8 8 N 1.34777 * 119.99928 * 299.72017 * 6 3 2 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 3 10 10 C 1.50699 * 109.47106 * 89.99354 * 9 8 6 11 11 H 1.07999 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99855 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99839 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00004 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47300 * 59.99768 * 14 12 10 16 16 H 1.48496 * 109.47216 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47256 * 299.99895 * 14 12 10 18 18 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 19 19 C 1.50697 * 109.46949 * 90.00203 * 18 8 6 20 20 C 1.38680 * 120.42160 * 269.72067 * 19 18 8 21 21 C 1.38623 * 118.42241 * 179.78241 * 20 19 18 22 22 C 1.38233 * 119.16032 * 0.51432 * 21 20 19 23 23 N 1.31854 * 120.76370 * 359.72928 * 22 21 20 24 24 C 1.31888 * 121.72386 * 359.97438 * 23 22 21 25 25 H 1.08003 * 119.99998 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99960 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99960 * 180.02562 * 2 1 3 28 28 H 0.96693 * 114.00250 * 300.00692 * 5 3 2 29 29 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 30 30 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 31 31 H 0.96999 * 119.99754 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47567 * 210.00057 * 18 8 6 33 33 H 1.09005 * 109.47076 * 330.00563 * 18 8 6 34 34 H 1.08001 * 120.78897 * 0.02614 * 20 19 18 35 35 H 1.08000 * 120.41749 * 180.22294 * 21 20 19 36 36 H 1.07994 * 119.61267 * 179.74648 * 22 21 20 37 37 H 1.08001 * 119.61449 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 8 2.8851 1.3809 -1.1667 6 6 2.9299 1.3849 1.2305 7 8 4.1326 1.4957 1.1192 8 7 2.3679 1.3387 2.4546 9 6 0.9152 1.2048 2.5891 10 6 0.5481 -0.2558 2.6419 11 1 1.3197 -1.0091 2.5817 12 6 -0.7729 -0.6306 2.7670 13 7 -1.7125 0.2867 2.8408 14 14 -1.2278 -2.4410 2.8331 15 1 -0.5627 -3.0763 3.9990 16 1 -2.7003 -2.5768 2.9694 17 1 -0.7821 -3.1094 1.5842 18 6 3.2096 1.4223 3.6507 19 6 3.3672 2.8657 4.0541 20 6 4.4166 3.6234 3.5562 21 6 4.5194 4.9482 3.9512 22 6 3.5854 5.4633 4.8304 23 7 2.6033 4.7118 5.2877 24 6 2.4711 3.4495 4.9291 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.5404 0.6730 -1.2329 29 1 0.5885 1.6949 3.5062 30 1 0.4266 1.6716 1.7338 31 1 -2.6417 0.0231 2.9292 32 1 2.7419 0.8669 4.4637 33 1 4.1895 0.9960 3.4360 34 1 5.1343 3.1927 2.8737 35 1 5.3218 5.5686 3.5803 36 1 3.6609 6.4933 5.1462 37 1 1.6533 2.8652 5.3243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596964857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:14 Heat of formation + Delta-G solvation = -22.643956 kcal Electronic energy + Delta-G solvation = -21853.561666 eV Core-core repulsion = 18596.846977 eV Total energy + Delta-G solvation = -3256.714690 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.14617 -39.28894 -36.28114 -35.43487 -33.44876 -32.21889 -32.06003 -31.21529 -27.53484 -27.26027 -24.92727 -23.45267 -22.87797 -21.89048 -19.91604 -18.94143 -17.01446 -16.88400 -16.54453 -16.21318 -15.87035 -15.40216 -15.08638 -14.56231 -14.45464 -13.83217 -13.50446 -13.21505 -12.86922 -12.70504 -12.42466 -12.30113 -12.00253 -11.79384 -11.61219 -11.20487 -11.15681 -11.01893 -10.77965 -10.31842 -10.07379 -9.90232 -9.59132 -9.25257 -9.15409 -8.85861 -8.58234 -8.17229 -7.88095 -6.23400 -4.23814 1.28688 1.51192 3.02576 3.16291 3.23573 3.24540 3.35385 3.72524 4.16995 4.27467 4.65624 4.94300 5.01209 5.10757 5.14299 5.20467 5.27339 5.36034 5.55309 5.63439 5.66879 5.87027 6.03611 6.12417 6.22898 6.34179 6.54781 6.61741 6.71801 6.92181 7.07196 7.34977 7.38407 7.58514 7.69848 7.89937 7.98147 8.17009 8.19301 8.69678 8.85845 9.36324 10.83490 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.006841 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.155299 B = 4092.064167 C = 5206.165961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.206 4.206 3 C 0.135 3.865 4 H 0.117 0.883 5 O -0.546 6.546 6 C 0.492 3.508 7 O -0.569 6.569 8 N -0.584 5.584 9 C 0.235 3.765 10 C -0.522 4.522 11 H 0.060 0.940 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.885 3.115 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.159 3.841 19 C -0.146 4.146 20 C -0.056 4.056 21 C -0.181 4.181 22 C 0.090 3.910 23 N -0.490 5.490 24 C 0.115 3.885 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.102 0.898 28 H 0.376 0.624 29 H 0.035 0.965 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.150 0.850 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 3.675 -0.205 7.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.225 4.225 3 C 0.073 3.927 4 H 0.134 0.866 5 O -0.350 6.350 6 C 0.280 3.720 7 O -0.450 6.450 8 N -0.314 5.314 9 C 0.116 3.884 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.133 4.133 13 N -0.526 5.526 14 Si 0.713 3.287 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C 0.035 3.965 19 C -0.149 4.149 20 C -0.083 4.083 21 C -0.201 4.201 22 C -0.068 4.068 23 N -0.198 5.198 24 C -0.043 4.043 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.224 0.776 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.155 0.845 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 6.382 4.642 0.226 7.895 hybrid contribution 0.401 -1.902 -0.152 1.950 sum 6.783 2.740 0.074 7.316 Atomic orbital electron populations 1.23420 0.95059 1.01275 0.92196 1.22489 0.96413 0.96003 1.07577 1.20739 0.90622 0.98221 0.83080 0.86557 1.86541 1.51671 1.55138 1.41647 1.21449 0.88731 0.75844 0.85947 1.90575 1.15282 1.52203 1.86987 1.48283 1.10226 1.69281 1.03659 1.19613 0.72694 0.97496 0.98595 1.21304 0.92390 0.91567 1.50851 0.92203 1.24785 0.96181 0.97146 0.95162 1.69898 1.00756 1.32679 1.49256 0.86766 0.77468 0.85612 0.78847 1.20271 1.21179 1.20100 1.20141 0.96839 0.90471 0.89006 1.21432 0.96183 0.98953 0.98335 1.21668 0.96886 0.93483 0.96224 1.22110 1.01291 0.96399 1.00295 1.22700 0.90521 0.99485 0.94053 1.67705 1.21454 1.06303 1.24333 1.22803 0.97032 0.90840 0.93588 0.89121 0.88893 0.87986 0.77599 0.94698 0.94307 0.92472 0.89018 0.89926 0.84505 0.85233 0.83263 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 9.91 29.01 0.29 -1.27 16 2 C -0.21 -3.79 6.76 -36.03 -0.24 -4.03 16 3 C 0.14 2.50 3.02 -29.03 -0.09 2.41 16 4 H 0.12 2.17 7.04 -51.93 -0.37 1.80 16 5 O -0.55 -9.63 12.95 -55.14 -0.71 -10.34 16 6 C 0.49 9.78 7.12 -10.98 -0.08 9.71 16 7 O -0.57 -12.01 15.60 -14.35 -0.22 -12.23 16 8 N -0.58 -11.41 2.44 -176.43 -0.43 -11.84 16 9 C 0.24 5.09 4.68 -5.19 -0.02 5.06 16 10 C -0.52 -12.05 5.83 -34.44 -0.20 -12.25 16 11 H 0.06 1.43 7.80 -52.49 -0.41 1.02 16 12 C 0.07 1.67 4.08 -17.82 -0.07 1.60 16 13 N -0.89 -22.29 13.29 55.43 0.74 -21.55 16 14 Si 0.89 19.15 29.45 -169.99 -5.01 14.14 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 18 C 0.16 2.76 5.56 -5.20 -0.03 2.73 16 19 C -0.15 -2.40 5.48 -104.48 -0.57 -2.97 16 20 C -0.06 -0.86 9.86 -39.28 -0.39 -1.25 16 21 C -0.18 -2.42 10.11 -39.44 -0.40 -2.82 16 22 C 0.09 1.24 11.18 -17.54 -0.20 1.04 16 23 N -0.49 -8.03 10.36 -13.25 -0.14 -8.16 16 24 C 0.11 1.90 10.86 -17.55 -0.19 1.71 16 25 H 0.09 1.74 7.87 -52.48 -0.41 1.32 16 26 H 0.09 1.79 7.36 -52.49 -0.39 1.40 16 27 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 28 H 0.38 5.61 8.85 45.56 0.40 6.02 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 0.88 4.95 -51.93 -0.26 0.62 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 32 H 0.09 1.53 8.02 -51.93 -0.42 1.11 16 33 H 0.08 1.42 7.37 -51.93 -0.38 1.04 16 34 H 0.14 2.14 7.71 -52.49 -0.40 1.73 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 LS Contribution 315.43 15.07 4.75 4.75 Total: -1.00 -27.28 315.43 -7.09 -34.37 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.88 Total: 11.19 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.19 Total: -0.33 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.17 Total: -41.55 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.94 Total: -22.58 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.01 Total: 14.14 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.28 -7.09 -34.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.728 kcal (2) G-P(sol) polarization free energy of solvation -27.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds