Wall clock time and date at job start Mon Mar 30 2020 20:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99786 * 2 1 4 4 H 1.08994 * 109.47383 * 0.02562 * 3 2 1 5 5 O 1.42899 * 109.47125 * 239.99875 * 3 2 1 6 6 C 1.50702 * 109.46811 * 120.00365 * 3 2 1 7 7 O 1.21283 * 120.00262 * 120.00111 * 6 3 2 8 8 N 1.34777 * 119.99928 * 299.72017 * 6 3 2 9 9 C 1.46506 * 120.00264 * 0.28128 * 8 6 3 10 10 C 1.50699 * 109.47106 * 89.99354 * 9 8 6 11 11 H 1.07999 * 120.00463 * 0.02562 * 10 9 8 12 12 C 1.37881 * 119.99855 * 180.02562 * 10 9 8 13 13 N 1.31518 * 119.99839 * 359.97438 * 12 10 9 14 14 Si 1.86790 * 120.00004 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47300 * 59.99768 * 14 12 10 16 16 H 1.48496 * 109.47216 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47256 * 299.99895 * 14 12 10 18 18 C 1.46499 * 120.00199 * 180.27479 * 8 6 3 19 19 C 1.50697 * 109.46949 * 90.00203 * 18 8 6 20 20 C 1.38680 * 120.42160 * 269.72067 * 19 18 8 21 21 C 1.38623 * 118.42241 * 179.78241 * 20 19 18 22 22 C 1.38233 * 119.16032 * 0.51432 * 21 20 19 23 23 N 1.31854 * 120.76370 * 359.72928 * 22 21 20 24 24 C 1.31888 * 121.72386 * 359.97438 * 23 22 21 25 25 H 1.08003 * 119.99998 * 180.02562 * 1 2 3 26 26 H 1.07998 * 119.99960 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99960 * 180.02562 * 2 1 3 28 28 H 0.96693 * 114.00250 * 300.00692 * 5 3 2 29 29 H 1.08994 * 109.46996 * 209.99677 * 9 8 6 30 30 H 1.09001 * 109.46578 * 329.99540 * 9 8 6 31 31 H 0.96999 * 119.99754 * 180.02562 * 13 12 10 32 32 H 1.09001 * 109.47567 * 210.00057 * 18 8 6 33 33 H 1.09005 * 109.47076 * 330.00563 * 18 8 6 34 34 H 1.08001 * 120.78897 * 0.02614 * 20 19 18 35 35 H 1.08000 * 120.41749 * 180.22294 * 21 20 19 36 36 H 1.07994 * 119.61267 * 179.74648 * 22 21 20 37 37 H 1.08001 * 119.61449 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 8 2.8851 1.3809 -1.1667 6 6 2.9299 1.3849 1.2305 7 8 4.1326 1.4957 1.1192 8 7 2.3679 1.3387 2.4546 9 6 0.9152 1.2048 2.5891 10 6 0.5481 -0.2558 2.6419 11 1 1.3197 -1.0091 2.5817 12 6 -0.7729 -0.6306 2.7670 13 7 -1.7125 0.2867 2.8408 14 14 -1.2278 -2.4410 2.8331 15 1 -0.5627 -3.0763 3.9990 16 1 -2.7003 -2.5768 2.9694 17 1 -0.7821 -3.1094 1.5842 18 6 3.2096 1.4223 3.6507 19 6 3.3672 2.8657 4.0541 20 6 4.4166 3.6234 3.5562 21 6 4.5194 4.9482 3.9512 22 6 3.5854 5.4633 4.8304 23 7 2.6033 4.7118 5.2877 24 6 2.4711 3.4495 4.9291 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 3.5404 0.6730 -1.2329 29 1 0.5885 1.6949 3.5062 30 1 0.4266 1.6716 1.7338 31 1 -2.6417 0.0231 2.9292 32 1 2.7419 0.8669 4.4637 33 1 4.1895 0.9960 3.4360 34 1 5.1343 3.1927 2.8737 35 1 5.3218 5.5686 3.5803 36 1 3.6609 6.4933 5.1462 37 1 1.6533 2.8652 5.3243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596964857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:13 Heat of formation + Delta-G solvation = -38.999130 kcal Electronic energy + Delta-G solvation = -21854.270880 eV Core-core repulsion = 18596.846977 eV Total energy + Delta-G solvation = -3257.423903 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.50387 -40.68519 -37.73673 -37.06784 -34.98823 -33.87943 -33.37010 -32.47748 -29.24861 -28.72267 -26.38054 -24.96606 -24.33069 -23.15477 -21.42085 -20.46956 -18.56901 -18.41658 -17.89285 -17.83165 -17.11296 -16.88437 -16.51939 -16.25304 -15.86218 -15.28267 -14.83439 -14.58141 -14.23101 -14.15355 -13.90436 -13.84089 -13.53162 -13.42966 -13.09860 -12.80537 -12.66851 -12.55554 -12.40019 -12.03658 -11.72271 -11.59541 -10.83145 -10.70488 -10.46862 -10.42664 -10.02082 -9.72069 -9.49838 -8.09249 -6.13163 0.11289 0.32191 1.42898 1.48503 1.49343 1.52450 1.79370 2.24567 2.48674 2.93442 3.22735 3.52999 3.55962 3.68091 3.87263 3.94332 4.05421 4.08896 4.11203 4.16686 4.46986 4.66373 4.72206 4.73810 4.85416 4.91083 5.17829 5.18688 5.28235 5.36058 5.68657 5.76895 5.82410 5.86151 6.07465 6.14643 6.49014 6.65145 6.88102 7.00290 7.23650 7.49796 8.96775 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.016831 B = 0.006841 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.155299 B = 4092.064167 C = 5206.165961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.199 4.199 3 C 0.141 3.859 4 H 0.114 0.886 5 O -0.548 6.548 6 C 0.489 3.511 7 O -0.581 6.581 8 N -0.584 5.584 9 C 0.251 3.749 10 C -0.516 4.516 11 H 0.053 0.947 12 C 0.042 3.958 13 N -0.912 5.912 14 Si 0.929 3.071 15 H -0.281 1.281 16 H -0.290 1.290 17 H -0.268 1.268 18 C 0.160 3.840 19 C -0.157 4.157 20 C -0.066 4.066 21 C -0.170 4.170 22 C 0.090 3.910 23 N -0.511 5.511 24 C 0.101 3.899 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.389 0.611 29 H 0.018 0.982 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.166 0.834 36 H 0.186 0.814 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.995 4.186 -0.388 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.218 4.218 3 C 0.079 3.921 4 H 0.132 0.868 5 O -0.354 6.354 6 C 0.278 3.722 7 O -0.464 6.464 8 N -0.314 5.314 9 C 0.131 3.869 10 C -0.555 4.555 11 H 0.071 0.929 12 C -0.159 4.159 13 N -0.552 5.552 14 Si 0.756 3.244 15 H -0.206 1.206 16 H -0.215 1.215 17 H -0.193 1.193 18 C 0.037 3.963 19 C -0.160 4.160 20 C -0.092 4.092 21 C -0.189 4.189 22 C -0.067 4.067 23 N -0.220 5.220 24 C -0.055 4.055 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.126 0.874 28 H 0.238 0.762 29 H 0.037 0.963 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.152 0.848 35 H 0.183 0.817 36 H 0.203 0.797 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.423 5.137 0.042 9.027 hybrid contribution 0.164 -1.987 -0.084 1.995 sum 7.587 3.150 -0.042 8.215 Atomic orbital electron populations 1.23352 0.95213 1.00910 0.92895 1.22516 0.96212 0.96199 1.06838 1.20636 0.90489 0.98126 0.82847 0.86812 1.86519 1.51984 1.55912 1.41000 1.21672 0.88715 0.75567 0.86268 1.90563 1.15750 1.52877 1.87163 1.48250 1.09591 1.69087 1.04486 1.19283 0.73833 0.96511 0.97323 1.21342 0.92112 0.91947 1.50048 0.92895 1.25211 0.96174 0.99492 0.95040 1.69979 1.00857 1.33953 1.50375 0.86065 0.76846 0.82619 0.78835 1.20644 1.21540 1.19261 1.20187 0.96356 0.91575 0.88172 1.21290 0.97086 0.98427 0.99177 1.21770 0.96544 0.94554 0.96381 1.22471 1.01697 0.95662 0.99097 1.23340 0.89443 1.00702 0.93256 1.67719 1.22813 1.06286 1.25171 1.22739 0.97237 0.91336 0.94210 0.89297 0.89501 0.87423 0.76152 0.96345 0.95111 0.92674 0.88972 0.89813 0.84812 0.81684 0.79695 0.83187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.91 67.78 0.67 -2.56 16 2 C -0.20 -7.13 6.76 25.64 0.17 -6.96 16 3 C 0.14 5.09 3.02 29.10 0.09 5.18 16 4 H 0.11 4.18 7.04 -2.39 -0.02 4.17 16 5 O -0.55 -18.55 12.95 -129.94 -1.68 -20.23 16 6 C 0.49 19.09 7.12 87.66 0.62 19.71 16 7 O -0.58 -23.92 15.60 16.00 0.25 -23.67 16 8 N -0.58 -22.70 2.44 -830.49 -2.03 -24.73 16 9 C 0.25 10.89 4.68 85.63 0.40 11.29 16 10 C -0.52 -23.62 5.83 25.60 0.15 -23.47 16 11 H 0.05 2.49 7.80 -2.91 -0.02 2.47 16 12 C 0.04 1.96 4.08 84.66 0.35 2.30 16 13 N -0.91 -45.82 13.29 21.45 0.28 -45.53 16 14 Si 0.93 38.67 29.45 68.60 2.02 40.69 16 15 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 18 C 0.16 5.55 5.56 85.63 0.48 6.03 16 19 C -0.16 -5.10 5.48 -19.77 -0.11 -5.21 16 20 C -0.07 -1.94 9.86 22.47 0.22 -1.72 16 21 C -0.17 -4.06 10.11 22.36 0.23 -3.83 16 22 C 0.09 2.24 11.18 84.69 0.95 3.19 16 23 N -0.51 -16.19 10.36 -195.84 -2.03 -18.22 16 24 C 0.10 3.36 10.86 84.67 0.92 4.28 16 25 H 0.09 3.34 7.87 -2.91 -0.02 3.31 16 26 H 0.09 3.34 7.36 -2.91 -0.02 3.32 16 27 H 0.11 3.75 8.06 -2.91 -0.02 3.73 16 28 H 0.39 10.95 8.85 -74.06 -0.66 10.29 16 29 H 0.02 0.87 8.07 -2.39 -0.02 0.85 16 30 H 0.03 1.40 4.95 -2.39 -0.01 1.39 16 31 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 32 H 0.09 3.12 8.02 -2.39 -0.02 3.10 16 33 H 0.08 2.86 7.37 -2.38 -0.02 2.84 16 34 H 0.13 4.00 7.71 -2.91 -0.02 3.98 16 35 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 36 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.15 4.99 8.06 -2.91 -0.02 4.97 16 Total: -1.00 -55.99 315.43 2.38 -53.61 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.43 Total: 29.84 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 5.13 Total: 8.24 kcal Atomic # 7 Polarization: -84.71 SS G_CDS: -3.77 Total: -88.48 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.43 Total: -43.90 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.02 Total: 40.69 kcal Total: -55.99 2.38 -53.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596964857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.611 kcal (2) G-P(sol) polarization free energy of solvation -55.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds