Wall clock time and date at job start Mon Mar 30 2020 20:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99818 * 2 1 4 4 H 1.09000 * 109.47356 * 5.43081 * 3 2 1 5 5 O 1.42901 * 109.46985 * 245.43553 * 3 2 1 6 6 C 1.50692 * 109.47480 * 125.43771 * 3 2 1 7 7 O 1.21284 * 120.00653 * 108.71307 * 6 3 2 8 8 N 1.34785 * 119.99707 * 288.71427 * 6 3 2 9 9 C 1.46494 * 120.00023 * 4.78321 * 8 6 3 10 10 C 1.50703 * 109.47224 * 269.05605 * 9 8 6 11 11 H 1.07995 * 119.99495 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99770 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00441 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99756 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46792 * 60.00057 * 14 12 10 16 16 H 1.48494 * 109.47318 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47120 * 300.00206 * 14 12 10 18 18 C 1.46501 * 119.99627 * 184.78154 * 8 6 3 19 19 C 1.50695 * 109.46933 * 94.13325 * 18 8 6 20 20 C 1.38234 * 119.62149 * 94.38167 * 19 18 8 21 21 C 1.38626 * 119.16091 * 179.78889 * 20 19 18 22 22 C 1.38674 * 118.41903 * 0.47650 * 21 20 19 23 23 C 1.38174 * 119.16695 * 359.50278 * 22 21 20 24 24 N 1.31857 * 119.61684 * 274.40638 * 19 18 8 25 25 H 1.07998 * 120.00304 * 5.11281 * 1 2 3 26 26 H 1.08002 * 119.99750 * 185.11249 * 1 2 3 27 27 H 1.08001 * 120.00414 * 179.97438 * 2 1 3 28 28 H 0.96704 * 113.99977 * 300.00179 * 5 3 2 29 29 H 1.09004 * 109.47187 * 29.05294 * 9 8 6 30 30 H 1.08997 * 109.47502 * 149.05516 * 9 8 6 31 31 H 0.97003 * 120.00305 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47838 * 334.12796 * 18 8 6 33 33 H 1.09004 * 109.46695 * 214.12859 * 18 8 6 34 34 H 1.07993 * 120.41656 * 0.02562 * 20 19 18 35 35 H 1.07997 * 120.79179 * 180.23687 * 21 20 19 36 36 H 1.08005 * 120.41658 * 179.78557 * 22 21 20 37 37 H 1.07998 * 119.62231 * 180.25340 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3591 2.1313 0.0973 5 8 2.7867 1.4376 -1.2254 6 6 3.0280 1.3284 1.1575 7 8 4.2206 1.2402 0.9551 8 7 2.5654 1.4471 2.4179 9 6 1.1226 1.4481 2.6716 10 6 0.6079 2.8642 2.6395 11 1 1.2877 3.6816 2.4496 12 6 -0.7306 3.1161 2.8536 13 7 -1.5583 2.1208 3.0853 14 14 -1.3685 4.8715 2.8146 15 1 -1.1004 5.4659 1.4805 16 1 -2.8308 4.8726 3.0728 17 1 -0.6811 5.6713 3.8601 18 6 3.5056 1.5752 3.5342 19 6 3.7255 3.0341 3.8408 20 6 2.9681 3.6480 4.8207 21 6 3.1814 4.9894 5.0981 22 6 4.1460 5.6688 4.3692 23 6 4.8646 4.9885 3.4048 24 7 4.6379 3.7104 3.1709 25 1 -0.5400 0.9315 -0.0833 26 1 -0.5400 -0.9316 0.0834 27 1 1.8501 -0.9353 0.0004 28 1 3.4331 0.7349 -1.3785 29 1 0.6184 0.8608 1.9041 30 1 0.9255 1.0120 3.6508 31 1 -2.4999 2.2981 3.2364 32 1 4.4553 1.1134 3.2642 33 1 3.0961 1.0769 4.4129 34 1 2.2224 3.0888 5.3660 35 1 2.6074 5.4944 5.8609 36 1 4.3363 6.7154 4.5562 37 1 5.6203 5.5093 2.8357 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597148589.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:11:19 Heat of formation + Delta-G solvation = -23.296212 kcal Electronic energy + Delta-G solvation = -22001.209625 eV Core-core repulsion = 18744.466652 eV Total energy + Delta-G solvation = -3256.742974 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.126 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.95243 -39.13046 -36.24020 -35.19486 -33.01074 -32.67376 -31.95928 -31.13601 -27.73557 -27.14953 -25.10491 -23.12365 -22.75819 -21.71476 -20.05207 -18.96586 -16.92534 -16.61220 -16.47200 -16.21374 -15.69760 -15.33555 -15.00153 -14.56713 -14.44356 -13.71152 -13.39933 -13.12212 -12.76661 -12.52373 -12.46940 -12.34557 -11.90161 -11.71218 -11.40944 -11.32822 -11.10510 -10.95322 -10.81207 -10.36521 -10.16010 -9.85042 -9.41381 -9.16410 -8.96087 -8.79056 -8.61155 -8.30362 -7.76323 -6.21834 -4.27503 1.52976 1.76461 2.58538 3.19789 3.25259 3.28111 3.36972 3.83665 4.28419 4.42753 4.75948 5.02475 5.11851 5.17913 5.21045 5.22511 5.45558 5.47186 5.52730 5.62373 5.88163 5.95832 6.18110 6.19854 6.23178 6.30146 6.55967 6.62725 6.70080 6.95779 7.09525 7.13903 7.18646 7.48754 7.72602 7.95287 8.02570 8.28217 8.51460 8.76148 8.96705 9.39516 10.84190 Molecular weight = 276.13amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.009903 C = 0.006374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.888987 B = 2826.696945 C = 4391.992999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.201 4.201 3 C 0.125 3.875 4 H 0.136 0.864 5 O -0.542 6.542 6 C 0.497 3.503 7 O -0.554 6.554 8 N -0.586 5.586 9 C 0.219 3.781 10 C -0.532 4.532 11 H 0.057 0.943 12 C 0.070 3.930 13 N -0.888 5.888 14 Si 0.887 3.113 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.167 3.833 19 C 0.125 3.875 20 C -0.129 4.129 21 C -0.084 4.084 22 C -0.181 4.181 23 C 0.087 3.913 24 N -0.465 5.465 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.375 0.625 29 H 0.061 0.939 30 H 0.033 0.967 31 H 0.265 0.735 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -0.273 1.748 5.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.219 4.219 3 C 0.064 3.936 4 H 0.154 0.846 5 O -0.346 6.346 6 C 0.285 3.715 7 O -0.434 6.434 8 N -0.318 5.318 9 C 0.099 3.901 10 C -0.570 4.570 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.526 5.526 14 Si 0.715 3.285 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.202 1.202 18 C 0.043 3.957 19 C -0.014 4.014 20 C -0.149 4.149 21 C -0.110 4.110 22 C -0.201 4.201 23 C -0.070 4.070 24 N -0.174 5.174 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.125 0.875 28 H 0.222 0.778 29 H 0.078 0.922 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.585 -0.286 0.977 5.677 hybrid contribution -0.920 1.240 0.978 1.828 sum 4.665 0.954 1.955 5.147 Atomic orbital electron populations 1.23923 0.95468 1.02590 0.94759 1.23096 0.96700 0.97470 1.04664 1.21008 0.91844 0.98001 0.82777 0.84637 1.86604 1.56386 1.53938 1.37720 1.21213 0.89329 0.76020 0.84961 1.90620 1.16618 1.51339 1.84783 1.48189 1.09194 1.69784 1.04594 1.19877 0.73250 0.98015 0.98929 1.21413 0.93303 0.92637 1.49696 0.92458 1.24848 0.96651 0.96942 0.94896 1.69898 1.04230 1.30727 1.47784 0.86716 0.77736 0.85172 0.78905 1.20142 1.21154 1.20192 1.20115 0.95249 0.89839 0.90517 1.21607 0.91136 0.97436 0.91255 1.21961 0.98801 0.95476 0.98700 1.21494 0.96344 0.94519 0.98622 1.22024 0.98538 1.00821 0.98726 1.22626 0.98255 0.90631 0.95517 1.67540 1.17222 1.08369 1.24311 0.87364 0.88289 0.87501 0.77766 0.92176 0.94853 0.92537 0.89114 0.89631 0.84633 0.85467 0.85642 0.83575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 12.42 29.01 0.36 -1.79 16 2 C -0.20 -3.39 7.91 -36.03 -0.29 -3.67 16 3 C 0.13 2.46 2.99 -29.04 -0.09 2.37 16 4 H 0.14 2.94 7.03 -51.93 -0.37 2.57 16 5 O -0.54 -10.23 13.03 -54.88 -0.72 -10.94 16 6 C 0.50 10.65 7.02 -10.99 -0.08 10.58 16 7 O -0.55 -12.87 15.80 -14.10 -0.22 -13.09 16 8 N -0.59 -12.23 2.45 -176.44 -0.43 -12.67 16 9 C 0.22 4.89 4.86 -5.20 -0.03 4.86 16 10 C -0.53 -13.08 8.11 -34.44 -0.28 -13.36 16 11 H 0.06 1.51 7.73 -52.49 -0.41 1.11 16 12 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 13 N -0.89 -22.90 13.29 55.43 0.74 -22.16 16 14 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 C 0.17 3.17 5.83 -5.20 -0.03 3.14 16 19 C 0.12 2.41 6.01 -82.59 -0.50 1.92 16 20 C -0.13 -2.29 9.23 -39.44 -0.36 -2.66 16 21 C -0.08 -1.33 10.18 -39.28 -0.40 -1.73 16 22 C -0.18 -2.71 10.11 -39.44 -0.40 -3.11 16 23 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 24 N -0.47 -9.28 10.27 -9.47 -0.10 -9.37 16 25 H 0.11 1.96 7.86 -52.49 -0.41 1.54 16 26 H 0.10 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.37 5.87 8.71 45.56 0.40 6.27 16 29 H 0.06 1.34 3.71 -51.93 -0.19 1.14 16 30 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 31 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 32 H 0.09 1.74 7.25 -51.93 -0.38 1.37 16 33 H 0.09 1.40 7.86 -51.93 -0.41 1.00 16 34 H 0.14 2.32 8.06 -52.49 -0.42 1.90 16 35 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 36 H 0.13 1.47 8.06 -52.48 -0.42 1.04 16 37 H 0.15 2.03 8.06 -52.49 -0.42 1.60 16 LS Contribution 321.78 15.07 4.85 4.85 Total: -1.00 -29.90 321.78 -7.13 -37.03 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -3.85 Total: 11.78 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -2.38 Total: -0.54 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.21 Total: -44.20 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.94 Total: -24.03 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.90 -7.13 -37.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597148589.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.735 kcal (2) G-P(sol) polarization free energy of solvation -29.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds